Wall clock time and date at job start Mon Mar 30 2020 01:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45202 * 109.47165 * 2 1 4 4 C 1.34228 * 116.99849 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00291 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99781 * 179.97438 * 4 3 2 7 7 C 1.53003 * 109.46872 * 179.97438 * 6 4 3 8 8 H 1.08999 * 110.43384 * 52.46370 * 7 6 4 9 9 C 1.54268 * 110.60199 * 289.84180 * 7 6 4 10 10 C 1.53873 * 106.59675 * 217.65487 * 9 7 6 11 11 C 1.54264 * 106.60152 * 0.02562 * 10 9 7 12 12 H 1.08998 * 110.49036 * 264.93341 * 11 10 9 13 13 N 1.46903 * 110.48958 * 142.28692 * 11 10 9 14 14 C 1.46892 * 111.00042 * 90.22257 * 13 11 10 15 15 C 1.53002 * 109.47236 * 180.02562 * 14 13 11 16 16 C 1.50704 * 109.47191 * 180.02562 * 15 14 13 17 17 H 1.07992 * 119.99724 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99621 * 180.02562 * 16 15 14 19 19 N 1.31509 * 120.00393 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99728 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47197 * 89.99685 * 20 18 16 22 22 H 1.48501 * 109.47421 * 209.99454 * 20 18 16 23 23 H 1.48504 * 109.47341 * 329.99610 * 20 18 16 24 24 C 1.54889 * 110.48251 * 174.99970 * 7 6 4 25 25 H 1.09001 * 109.47498 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47575 * 300.00237 * 1 2 3 27 27 H 1.08999 * 109.47011 * 59.99897 * 1 2 3 28 28 H 1.08994 * 109.47162 * 240.00149 * 2 1 3 29 29 H 1.09000 * 109.46915 * 119.99556 * 2 1 3 30 30 H 1.09007 * 109.46914 * 60.00163 * 6 4 3 31 31 H 1.08995 * 109.47242 * 300.00320 * 6 4 3 32 32 H 1.08999 * 110.03152 * 336.94354 * 9 7 6 33 33 H 1.08994 * 110.02899 * 98.37081 * 9 7 6 34 34 H 1.09001 * 110.03473 * 240.71407 * 10 9 7 35 35 H 1.09005 * 110.03108 * 119.28164 * 10 9 7 36 36 H 1.00905 * 110.99694 * 326.26945 * 13 11 10 37 37 H 1.08999 * 109.47594 * 300.00354 * 14 13 11 38 38 H 1.08998 * 109.46935 * 60.00366 * 14 13 11 39 39 H 1.08999 * 109.47075 * 300.00619 * 15 14 13 40 40 H 1.08998 * 109.46902 * 60.00293 * 15 14 13 41 41 H 0.96998 * 120.00374 * 180.02562 * 19 18 16 42 42 H 1.09000 * 110.75622 * 38.44441 * 24 7 6 43 43 H 1.09003 * 110.92015 * 275.14051 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9374 0.0000 7 6 5.4486 2.8573 0.0014 8 1 5.7968 2.2153 -0.8077 9 6 5.9638 2.3404 1.3606 10 6 7.2537 3.1213 1.6675 11 6 7.4769 4.0859 0.4845 12 1 8.1525 3.6426 -0.2470 13 7 8.0052 5.3710 0.9615 14 6 9.4739 5.3608 0.9836 15 6 9.9859 6.7125 1.4853 16 6 11.4927 6.7023 1.5073 17 1 12.0313 5.8201 1.1944 18 6 12.1836 7.8193 1.9270 19 7 11.5277 8.8937 2.3076 20 14 14.0513 7.8063 1.9551 21 1 14.5693 8.2827 0.6474 22 1 14.5364 8.7021 3.0356 23 1 14.5331 6.4239 2.2045 24 6 6.0657 4.2723 -0.1256 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 3.5843 3.4701 0.8896 31 1 3.5852 3.4690 -0.8904 32 1 5.2212 2.5262 2.1365 33 1 6.1792 1.2739 1.2970 34 1 8.0951 2.4337 1.7530 35 1 7.1370 3.6862 2.5924 36 1 7.6315 5.6007 1.8702 37 1 9.8219 4.5711 1.6494 38 1 9.8512 5.1798 -0.0229 39 1 9.6379 7.5025 0.8198 40 1 9.6087 6.8931 2.4918 41 1 12.0137 9.6796 2.6025 42 1 5.4897 4.9978 0.4488 43 1 6.1333 4.5750 -1.1705 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173637600.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:01 Heat of formation + Delta-G solvation = -138.760881 kcal Electronic energy + Delta-G solvation = -20120.023583 eV Core-core repulsion = 16969.991302 eV Total energy + Delta-G solvation = -3150.032282 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.58734 -39.73387 -37.72573 -36.50411 -34.81522 -32.93722 -32.13059 -30.65158 -28.99950 -26.90686 -25.35606 -24.00023 -22.53867 -22.20401 -21.29444 -20.55742 -18.63273 -18.51076 -17.78062 -17.29157 -16.96052 -16.50757 -16.01343 -15.69537 -15.37826 -14.95200 -14.41155 -14.27386 -14.24662 -13.96228 -13.63499 -13.42061 -13.20452 -12.88687 -12.85019 -12.73389 -12.67526 -12.47561 -12.28676 -12.05123 -11.88817 -11.75608 -11.61608 -11.52702 -11.42835 -11.40324 -11.30628 -11.10167 -10.56159 -9.18116 -8.20107 -6.31437 1.22197 1.40206 1.41815 1.52750 1.72687 2.40613 3.13039 3.31029 3.55352 3.69816 3.84458 4.00556 4.05095 4.09358 4.19174 4.32567 4.35088 4.45536 4.55895 4.60683 4.65297 4.69474 4.78199 4.81533 4.86874 4.92631 4.94984 5.05959 5.07971 5.12168 5.17483 5.24563 5.39031 5.46140 5.47422 5.54156 5.69855 5.80833 6.17495 6.33271 6.60377 6.77276 6.85851 7.37593 8.91901 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.072569 B = 0.002421 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.744553 B =11561.391120 C =11725.556864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.365 6.365 4 C 0.461 3.539 5 O -0.538 6.538 6 C -0.101 4.101 7 C -0.075 4.075 8 H 0.075 0.925 9 C -0.106 4.106 10 C -0.150 4.150 11 C 0.078 3.922 12 H 0.070 0.930 13 N -0.687 5.687 14 C 0.085 3.915 15 C 0.032 3.968 16 C -0.546 4.546 17 H 0.058 0.942 18 C 0.000 4.000 19 N -0.930 5.930 20 Si 0.967 3.033 21 H -0.272 1.272 22 H -0.281 1.281 23 H -0.265 1.265 24 C -0.095 4.095 25 H 0.097 0.903 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.125 0.875 31 H 0.130 0.870 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.340 0.660 37 H 0.015 0.985 38 H 0.055 0.945 39 H -0.004 1.004 40 H -0.008 1.008 41 H 0.264 0.736 42 H 0.082 0.918 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.320 -16.393 -4.620 28.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 O -0.282 6.282 4 C 0.306 3.694 5 O -0.428 6.428 6 C -0.138 4.138 7 C -0.094 4.094 8 H 0.093 0.907 9 C -0.144 4.144 10 C -0.189 4.189 11 C -0.033 4.033 12 H 0.088 0.912 13 N -0.317 5.317 14 C -0.044 4.044 15 C -0.006 4.006 16 C -0.584 4.584 17 H 0.077 0.923 18 C -0.198 4.198 19 N -0.570 5.570 20 Si 0.791 3.209 21 H -0.197 1.197 22 H -0.206 1.206 23 H -0.189 1.189 24 C -0.133 4.133 25 H 0.116 0.884 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.143 0.857 31 H 0.148 0.852 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.158 0.842 37 H 0.033 0.967 38 H 0.073 0.927 39 H 0.014 0.986 40 H 0.010 0.990 41 H 0.073 0.927 42 H 0.101 0.899 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -22.142 -16.233 -5.173 27.938 hybrid contribution 1.391 -0.574 0.988 1.800 sum -20.752 -16.808 -4.185 27.030 Atomic orbital electron populations 1.21821 0.90570 1.04257 1.03737 1.23234 0.97009 0.79518 1.02321 1.86523 1.24458 1.33420 1.83794 1.24314 0.80393 0.93559 0.71168 1.90661 1.60985 1.44461 1.46648 1.21574 0.94641 0.89622 1.07976 1.21738 0.92544 0.96952 0.98151 0.90689 1.22060 0.96306 0.99140 0.96925 1.22852 0.98264 0.98927 0.98852 1.22506 0.96972 0.87715 0.96059 0.91211 1.60569 1.07052 1.31142 1.32926 1.21774 0.86730 0.96956 0.98969 1.18926 0.94469 0.92734 0.94464 1.21620 0.93143 0.99603 1.44057 0.92339 1.25974 1.03996 0.95079 0.94740 1.70099 1.37594 1.04203 1.45118 0.85424 0.79079 0.78350 0.78025 1.19723 1.20596 1.18887 1.22434 0.93854 0.95451 1.01574 0.88446 0.91295 0.91191 0.91523 0.91652 0.85658 0.85171 0.91254 0.92530 0.92918 0.91813 0.84158 0.96675 0.92688 0.98603 0.98986 0.92719 0.89913 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.29 71.98 0.74 -0.47 16 2 C 0.05 0.74 6.19 71.98 0.45 1.18 16 3 O -0.36 -6.38 10.22 -51.40 -0.53 -6.91 16 4 C 0.46 8.93 7.77 71.24 0.55 9.48 16 5 O -0.54 -13.77 14.76 21.96 0.32 -13.44 16 6 C -0.10 -1.46 5.21 29.85 0.16 -1.30 16 7 C -0.07 -1.43 2.44 -9.72 -0.02 -1.45 16 8 H 0.07 1.60 7.90 -2.39 -0.02 1.58 16 9 C -0.11 -2.31 5.58 31.32 0.17 -2.13 16 10 C -0.15 -3.81 6.50 31.32 0.20 -3.61 16 11 C 0.08 2.17 3.18 45.98 0.15 2.32 16 12 H 0.07 2.07 7.83 -2.39 -0.02 2.05 16 13 N -0.69 -24.19 6.36 -486.08 -3.09 -27.28 16 14 C 0.08 3.64 5.48 86.31 0.47 4.12 16 15 C 0.03 1.71 5.23 29.85 0.16 1.86 16 16 C -0.55 -31.72 9.11 25.60 0.23 -31.49 16 17 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 18 C 0.00 0.01 5.46 84.66 0.46 0.47 16 19 N -0.93 -57.23 13.29 21.45 0.28 -56.95 16 20 Si 0.97 44.80 29.54 68.60 2.03 46.83 16 21 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 23 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 24 C -0.10 -2.03 6.00 31.88 0.19 -1.84 16 25 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.07 0.95 8.13 -2.39 -0.02 0.93 16 29 H 0.07 0.95 8.13 -2.39 -0.02 0.93 16 30 H 0.13 1.41 7.96 -2.38 -0.02 1.39 16 31 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.07 1.35 7.72 -2.39 -0.02 1.33 16 33 H 0.06 1.37 7.77 -2.39 -0.02 1.35 16 34 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.06 1.64 7.52 -2.38 -0.02 1.62 16 36 H 0.34 11.60 8.06 -89.69 -0.72 10.87 16 37 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.05 2.38 8.08 -2.39 -0.02 2.36 16 39 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 40 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 41 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 42 H 0.08 1.66 8.06 -2.39 -0.02 1.64 16 43 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -68.87 350.43 3.17 -65.70 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 0.24 Total: 14.91 kcal Atomic # 6 Polarization: -26.77 SS G_CDS: 3.91 Total: -22.86 kcal Atomic # 7 Polarization: -81.42 SS G_CDS: -2.81 Total: -84.23 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.20 Total: -20.35 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -68.87 3.17 -65.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173637600.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.064 kcal (2) G-P(sol) polarization free energy of solvation -68.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds