Wall clock time and date at job start Mon Mar 30 2020 01:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45196 * 109.46902 * 2 1 4 4 C 1.34239 * 116.99731 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99919 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99643 * 179.97438 * 4 3 2 7 7 C 1.53004 * 109.46862 * 179.97438 * 6 4 3 8 8 H 1.09002 * 110.43542 * 305.70357 * 7 6 4 9 9 C 1.54266 * 110.48402 * 68.24339 * 7 6 4 10 10 C 1.54224 * 106.42656 * 142.38652 * 9 7 6 11 11 C 1.54264 * 106.63737 * 359.97438 * 10 9 7 12 12 H 1.09006 * 110.48110 * 95.07788 * 11 10 9 13 13 N 1.46891 * 110.49039 * 217.72381 * 11 10 9 14 14 C 1.46901 * 111.00020 * 269.77932 * 13 11 10 15 15 C 1.53007 * 109.46888 * 179.97438 * 14 13 11 16 16 C 1.50700 * 109.46583 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00591 * 359.97438 * 16 15 14 18 18 C 1.37883 * 119.99641 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00089 * 179.97438 * 18 16 15 20 20 Si 1.86806 * 119.99935 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47047 * 89.99693 * 20 18 16 22 22 H 1.48500 * 109.46783 * 209.99865 * 20 18 16 23 23 H 1.48494 * 109.46819 * 329.99587 * 20 18 16 24 24 C 1.54891 * 110.48666 * 183.16031 * 7 6 4 25 25 H 1.08997 * 109.46994 * 59.99712 * 1 2 3 26 26 H 1.09000 * 109.46550 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46775 * 299.99797 * 1 2 3 28 28 H 1.08998 * 109.47214 * 240.00365 * 2 1 3 29 29 H 1.09007 * 109.46995 * 120.00351 * 2 1 3 30 30 H 1.09002 * 109.47212 * 60.00944 * 6 4 3 31 31 H 1.08991 * 109.47390 * 300.00099 * 6 4 3 32 32 H 1.08998 * 110.03538 * 261.70399 * 9 7 6 33 33 H 1.09004 * 110.03276 * 23.13568 * 9 7 6 34 34 H 1.09009 * 110.00234 * 240.69061 * 10 9 7 35 35 H 1.08999 * 110.02130 * 119.28481 * 10 9 7 36 36 H 1.00903 * 110.99603 * 33.73058 * 13 11 10 37 37 H 1.08997 * 109.47021 * 299.99461 * 14 13 11 38 38 H 1.08994 * 109.47167 * 60.00012 * 14 13 11 39 39 H 1.08997 * 109.46970 * 299.99639 * 15 14 13 40 40 H 1.08994 * 109.47087 * 60.00110 * 15 14 13 41 41 H 0.96998 * 120.00529 * 180.02562 * 19 18 16 42 42 H 1.09000 * 110.75322 * 321.56340 * 24 7 6 43 43 H 1.09002 * 110.75658 * 84.93540 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9207 2.9374 0.0000 7 6 5.4487 2.8573 0.0014 8 1 5.7968 2.2428 0.8316 9 6 5.9610 2.2931 -1.3399 10 6 7.2538 3.0654 -1.6726 11 6 7.4773 4.0688 -0.5223 12 1 8.1530 3.6499 0.2234 13 7 8.0055 5.3372 -1.0418 14 6 9.4743 5.3262 -1.0638 15 6 9.9862 6.6605 -1.6102 16 6 11.4929 6.6489 -1.6333 17 1 12.0316 5.7773 -1.2921 18 6 12.1839 7.7512 -2.0902 19 7 13.4988 7.7414 -2.1100 20 14 11.2522 9.2591 -2.6799 21 1 11.0297 10.1815 -1.5377 22 1 12.0438 9.9514 -3.7284 23 1 9.9425 8.8430 -3.2425 24 6 6.0658 4.2758 0.0809 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.5845 3.4700 0.8896 31 1 3.5852 3.4690 -0.8904 32 1 6.1746 1.2290 -1.2402 33 1 5.2175 2.4536 -2.1208 34 1 7.1371 3.5989 -2.6160 35 1 8.0952 2.3753 -1.7349 36 1 7.6316 5.5365 -1.9576 37 1 9.8517 5.1788 -0.0519 38 1 9.8220 4.5148 -1.7031 39 1 9.6088 6.8075 -2.6222 40 1 9.6384 7.4722 -0.9713 41 1 13.9849 8.5169 -2.4310 42 1 5.4898 4.9817 -0.5175 43 1 6.1333 4.6102 1.1161 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173637601.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:03 Heat of formation + Delta-G solvation = -136.494476 kcal Electronic energy + Delta-G solvation = -20178.418446 eV Core-core repulsion = 17028.484443 eV Total energy + Delta-G solvation = -3149.934003 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.58925 -39.73177 -37.73422 -36.53357 -34.79007 -33.00065 -32.29423 -30.87511 -29.08470 -26.94277 -25.19469 -24.00038 -22.39759 -22.19537 -21.25857 -20.56743 -18.95992 -18.62757 -17.78157 -17.28967 -16.94145 -16.44316 -15.96339 -15.66092 -15.41892 -15.06857 -14.66502 -14.34247 -14.23911 -14.02443 -13.64881 -13.48149 -13.25020 -12.96969 -12.89510 -12.76243 -12.63677 -12.47872 -12.05125 -11.94148 -11.76977 -11.70400 -11.64733 -11.54031 -11.44796 -11.43234 -11.40796 -11.20646 -10.76578 -9.22424 -8.29432 -6.34388 1.22442 1.38625 1.40127 1.52888 1.72860 2.37734 3.06021 3.26833 3.54878 3.69265 3.84417 4.00209 4.03717 4.09037 4.18957 4.32219 4.34797 4.41503 4.54676 4.57762 4.61168 4.68899 4.77064 4.81247 4.86641 4.92368 4.94395 4.97386 5.06060 5.12141 5.16643 5.19106 5.36896 5.39969 5.47036 5.51993 5.54371 5.64575 6.20493 6.27390 6.59071 6.75036 6.77488 7.30468 8.87294 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.058511 B = 0.002569 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.428892 B =10897.147128 C =11124.987657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.365 6.365 4 C 0.460 3.540 5 O -0.538 6.538 6 C -0.100 4.100 7 C -0.076 4.076 8 H 0.072 0.928 9 C -0.106 4.106 10 C -0.151 4.151 11 C 0.077 3.923 12 H 0.067 0.933 13 N -0.682 5.682 14 C 0.087 3.913 15 C -0.004 4.004 16 C -0.536 4.536 17 H 0.029 0.971 18 C 0.002 3.998 19 N -0.952 5.952 20 Si 0.958 3.042 21 H -0.267 1.267 22 H -0.284 1.284 23 H -0.245 1.245 24 C -0.093 4.093 25 H 0.068 0.932 26 H 0.096 0.904 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.131 0.869 31 H 0.127 0.873 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.048 0.952 36 H 0.343 0.657 37 H 0.052 0.948 38 H 0.013 0.987 39 H 0.020 0.980 40 H 0.023 0.977 41 H 0.267 0.733 42 H 0.087 0.913 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.672 -12.218 3.641 32.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 O -0.282 6.282 4 C 0.305 3.695 5 O -0.428 6.428 6 C -0.137 4.137 7 C -0.096 4.096 8 H 0.091 0.909 9 C -0.144 4.144 10 C -0.190 4.190 11 C -0.033 4.033 12 H 0.085 0.915 13 N -0.313 5.313 14 C -0.042 4.042 15 C -0.042 4.042 16 C -0.574 4.574 17 H 0.047 0.953 18 C -0.195 4.195 19 N -0.592 5.592 20 Si 0.781 3.219 21 H -0.192 1.192 22 H -0.210 1.210 23 H -0.168 1.168 24 C -0.131 4.131 25 H 0.087 0.913 26 H 0.115 0.885 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.149 0.851 31 H 0.145 0.855 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.162 0.838 37 H 0.071 0.929 38 H 0.031 0.969 39 H 0.039 0.961 40 H 0.042 0.958 41 H 0.075 0.925 42 H 0.105 0.895 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -29.369 -12.116 4.207 32.047 hybrid contribution 0.950 -0.497 -1.009 1.473 sum -28.418 -12.613 3.198 31.256 Atomic orbital electron populations 1.21819 0.90561 1.04241 1.03749 1.23229 0.97009 0.79556 1.02282 1.86523 1.24481 1.33359 1.83806 1.24361 0.80382 0.93634 0.71171 1.90667 1.60994 1.44521 1.46635 1.21574 0.94586 0.89525 1.08048 1.21755 0.92604 0.96984 0.98207 0.90916 1.22120 0.96279 0.98997 0.97030 1.22923 0.98119 0.98841 0.99112 1.22495 0.97036 0.87766 0.96012 0.91495 1.60581 1.06559 1.32935 1.31192 1.21630 0.86866 0.96638 0.99085 1.19439 0.93383 0.95099 0.96261 1.21434 0.92138 1.01198 1.42648 0.95295 1.26066 0.95674 1.02428 0.95293 1.70074 1.08343 1.31870 1.48950 0.85542 0.79447 0.78349 0.78563 1.19185 1.21028 1.16792 1.22429 0.93642 0.95280 1.01735 0.91262 0.88498 0.91179 0.91687 0.91587 0.85127 0.85494 0.92769 0.91202 0.91428 0.93287 0.83758 0.92944 0.96919 0.96119 0.95821 0.92453 0.89462 0.90525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.29 71.98 0.74 -0.40 16 2 C 0.05 0.72 6.19 71.98 0.45 1.16 16 3 O -0.36 -6.10 10.22 -51.51 -0.53 -6.63 16 4 C 0.46 8.53 7.76 71.23 0.55 9.09 16 5 O -0.54 -13.50 14.64 21.96 0.32 -13.18 16 6 C -0.10 -1.31 5.20 29.85 0.16 -1.16 16 7 C -0.08 -1.37 2.46 -9.72 -0.02 -1.39 16 8 H 0.07 1.49 7.96 -2.39 -0.02 1.47 16 9 C -0.11 -2.21 5.51 31.44 0.17 -2.03 16 10 C -0.15 -3.64 6.51 31.44 0.20 -3.43 16 11 C 0.08 2.01 3.18 45.99 0.15 2.16 16 12 H 0.07 1.92 7.83 -2.38 -0.02 1.91 16 13 N -0.68 -21.51 6.36 -486.05 -3.09 -24.60 16 14 C 0.09 3.52 5.48 86.31 0.47 4.00 16 15 C 0.00 -0.19 4.30 29.85 0.13 -0.06 16 16 C -0.54 -31.68 9.66 25.60 0.25 -31.43 16 17 H 0.03 1.88 7.99 -2.91 -0.02 1.86 16 18 C 0.00 0.12 5.47 84.66 0.46 0.58 16 19 N -0.95 -60.68 13.96 21.45 0.30 -60.38 16 20 Si 0.96 44.89 27.47 68.60 1.88 46.77 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 22 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 23 H -0.24 -10.56 6.54 99.48 0.65 -9.91 16 24 C -0.09 -1.78 6.00 31.89 0.19 -1.59 16 25 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 29 H 0.07 0.92 8.13 -2.38 -0.02 0.90 16 30 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.13 1.21 8.01 -2.39 -0.02 1.19 16 32 H 0.05 1.30 7.68 -2.39 -0.02 1.28 16 33 H 0.07 1.28 7.75 -2.38 -0.02 1.27 16 34 H 0.07 1.59 7.52 -2.38 -0.02 1.57 16 35 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.34 9.99 8.06 -89.69 -0.72 9.27 16 37 H 0.05 2.22 8.08 -2.39 -0.02 2.20 16 38 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 40 H 0.02 1.11 7.57 -2.39 -0.02 1.10 16 41 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 42 H 0.09 1.49 8.06 -2.39 -0.02 1.47 16 43 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -71.01 346.67 2.97 -68.03 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 0.19 Total: 14.49 kcal Atomic # 6 Polarization: -28.40 SS G_CDS: 3.90 Total: -24.51 kcal Atomic # 7 Polarization: -82.19 SS G_CDS: -2.79 Total: -84.98 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.20 Total: -19.81 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.88 Total: 46.77 kcal Total: -71.01 2.97 -68.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173637601.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.461 kcal (2) G-P(sol) polarization free energy of solvation -71.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds