Wall clock time and date at job start Mon Mar 30 2020 01:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45202 * 109.47450 * 2 1 4 4 C 1.34222 * 117.00354 * 180.02562 * 3 2 1 5 5 O 1.20829 * 119.99906 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00213 * 180.02562 * 4 3 2 7 7 C 1.53003 * 109.47151 * 179.97438 * 6 4 3 8 8 H 1.09001 * 110.43424 * 303.91343 * 7 6 4 9 9 C 1.54892 * 110.48409 * 66.45148 * 7 6 4 10 10 C 1.54891 * 102.74803 * 156.61928 * 9 7 6 11 11 C 1.54264 * 104.19776 * 322.05963 * 10 9 7 12 12 H 1.09003 * 110.03265 * 264.27870 * 11 10 9 13 13 N 1.46897 * 110.03424 * 142.89350 * 11 10 9 14 14 C 1.46893 * 111.00104 * 86.45794 * 13 11 10 15 15 C 1.53004 * 109.47285 * 180.02562 * 14 13 11 16 16 C 1.50701 * 109.47211 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99761 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99694 * 180.27574 * 16 15 14 19 19 N 1.31514 * 120.00482 * 359.71466 * 18 16 15 20 20 Si 1.86801 * 119.99746 * 179.72062 * 18 16 15 21 21 H 1.48494 * 109.47230 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47301 * 119.99669 * 20 18 16 23 23 H 1.48498 * 109.47430 * 239.99516 * 20 18 16 24 24 C 1.53878 * 106.59804 * 23.60793 * 11 10 9 25 25 H 1.09000 * 109.47046 * 59.99510 * 1 2 3 26 26 H 1.08991 * 109.47135 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46878 * 300.00138 * 1 2 3 28 28 H 1.09005 * 109.46668 * 240.00182 * 2 1 3 29 29 H 1.08996 * 109.46944 * 120.00000 * 2 1 3 30 30 H 1.08998 * 109.47012 * 59.99565 * 6 4 3 31 31 H 1.08993 * 109.46714 * 299.99550 * 6 4 3 32 32 H 1.09004 * 110.76027 * 38.30758 * 9 7 6 33 33 H 1.08999 * 110.91710 * 275.00939 * 9 7 6 34 34 H 1.08998 * 110.48831 * 203.37799 * 10 9 7 35 35 H 1.08998 * 110.48433 * 80.73428 * 10 9 7 36 36 H 1.00908 * 111.00037 * 210.40816 * 13 11 10 37 37 H 1.09000 * 109.47823 * 59.99694 * 14 13 11 38 38 H 1.09007 * 109.47029 * 299.99462 * 14 13 11 39 39 H 1.09000 * 109.47211 * 59.98987 * 15 14 13 40 40 H 1.09007 * 109.46376 * 299.99529 * 15 14 13 41 41 H 0.96995 * 120.00207 * 179.97438 * 19 18 16 42 42 H 1.08999 * 110.03445 * 119.28320 * 24 11 10 43 43 H 1.09001 * 110.03563 * 240.71958 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 0.0000 7 6 5.4487 2.8572 -0.0001 8 1 5.7990 2.2679 0.8473 9 6 5.9596 2.2505 -1.3306 10 6 7.4085 2.7910 -1.4186 11 6 7.3097 4.2296 -0.8705 12 1 7.1999 4.9359 -1.6934 13 7 8.5093 4.5531 -0.0868 14 6 9.5810 5.0642 -0.9516 15 6 10.8112 5.3886 -0.1016 16 6 11.9110 5.9124 -0.9888 17 1 11.7489 6.0042 -2.0526 18 6 13.1261 6.2684 -0.4433 19 7 13.3235 6.1563 0.8521 20 14 14.4919 6.9103 -1.5441 21 1 14.0203 6.9401 -2.9519 22 1 14.8673 8.2825 -1.1183 23 1 15.6742 6.0181 -1.4374 24 6 6.0636 4.2717 0.0314 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8900 30 1 3.5853 3.4690 0.8904 31 1 3.5845 3.4699 -0.8895 32 1 5.3633 2.6054 -2.1712 33 1 5.9555 1.1613 -1.2885 34 1 7.7502 2.7997 -2.4536 35 1 8.0772 2.1923 -0.8001 36 1 8.2944 5.2093 0.6490 37 1 9.2402 5.9674 -1.4576 38 1 9.8412 4.3085 -1.6929 39 1 11.1519 4.4852 0.4042 40 1 10.5513 6.1441 0.6400 41 1 14.1785 6.4064 1.2358 42 1 6.3490 4.5321 1.0506 43 1 5.3482 4.9984 -0.3538 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173637602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:06 Heat of formation + Delta-G solvation = -117.919289 kcal Electronic energy + Delta-G solvation = -20166.917859 eV Core-core repulsion = 17017.789336 eV Total energy + Delta-G solvation = -3149.128522 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.77569 -38.64632 -36.84083 -34.95019 -32.89470 -32.19551 -30.98814 -29.30927 -27.66942 -25.61033 -23.69195 -23.38423 -21.49660 -20.50666 -20.06690 -19.55322 -17.84353 -16.97803 -16.66432 -16.29436 -15.25195 -15.06071 -14.93610 -14.50444 -14.34434 -13.70089 -13.44678 -13.31691 -13.19107 -12.77269 -12.49202 -12.26894 -12.11127 -11.93419 -11.44811 -11.29312 -11.09587 -10.96797 -10.86710 -10.83631 -10.75628 -10.64027 -10.48050 -10.45222 -10.39128 -9.90654 -9.31025 -9.09311 -8.33150 -7.75091 -5.97417 -3.99752 2.02621 2.41184 3.32662 3.39919 3.44128 4.35809 4.46083 4.50820 4.54253 4.60214 4.64575 4.84040 4.84919 4.89177 5.09681 5.25559 5.33116 5.37489 5.38496 5.51772 5.53164 5.56834 5.67891 5.72344 5.82617 5.94162 6.02271 6.16186 6.23081 6.31680 6.37631 6.43523 6.48525 6.65137 7.03681 7.56416 7.57188 7.77133 7.88324 8.02991 8.12785 8.47104 9.07916 9.63917 11.14053 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.070344 B = 0.002451 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.951032 B =11422.180741 C =11489.418014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.364 6.364 4 C 0.460 3.540 5 O -0.501 6.501 6 C -0.107 4.107 7 C -0.077 4.077 8 H 0.087 0.913 9 C -0.119 4.119 10 C -0.113 4.113 11 C 0.082 3.918 12 H 0.040 0.960 13 N -0.686 5.686 14 C 0.066 3.934 15 C 0.024 3.976 16 C -0.520 4.520 17 H 0.054 0.946 18 C 0.056 3.944 19 N -0.893 5.893 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.119 4.119 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.335 0.665 37 H 0.014 0.986 38 H 0.057 0.943 39 H 0.025 0.975 40 H 0.013 0.987 41 H 0.260 0.740 42 H 0.074 0.926 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.934 -8.821 -1.756 27.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.281 6.281 4 C 0.303 3.697 5 O -0.388 6.388 6 C -0.144 4.144 7 C -0.096 4.096 8 H 0.105 0.895 9 C -0.157 4.157 10 C -0.151 4.151 11 C -0.029 4.029 12 H 0.058 0.942 13 N -0.317 5.317 14 C -0.062 4.062 15 C -0.013 4.013 16 C -0.559 4.559 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.157 4.157 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.153 0.847 37 H 0.032 0.968 38 H 0.076 0.924 39 H 0.043 0.957 40 H 0.031 0.969 41 H 0.069 0.931 42 H 0.093 0.907 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -25.361 -9.750 -1.633 27.220 hybrid contribution 0.509 1.121 -0.749 1.441 sum -24.852 -8.629 -2.382 26.415 Atomic orbital electron populations 1.21807 0.92691 1.02961 1.03503 1.23007 0.95304 0.80371 1.02627 1.86511 1.25026 1.32329 1.84258 1.23906 0.80281 0.93205 0.72336 1.90677 1.60195 1.43233 1.44678 1.21568 0.96735 0.90491 1.05640 1.21800 0.90468 0.97195 1.00117 0.89498 1.22591 0.96382 1.00992 0.95694 1.22412 0.96178 0.95881 1.00639 1.22128 0.89519 0.96611 0.94615 0.94176 1.60769 1.07291 1.49662 1.13991 1.22181 0.92224 0.96062 0.95763 1.19079 0.90401 0.96967 0.94856 1.21228 0.97744 1.42846 0.94077 0.92741 1.25011 0.98583 0.95875 0.94993 1.69983 1.24177 1.48518 1.10591 0.86534 0.82114 0.78494 0.80834 1.19790 1.21054 1.20989 1.22392 0.96766 0.95759 1.00802 0.91488 0.90270 0.91487 0.91256 0.91250 0.87725 0.87713 0.92325 0.90673 0.92301 0.90185 0.84698 0.96809 0.92423 0.95665 0.96872 0.93075 0.90699 0.91710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 10.29 37.16 0.38 -0.39 16 2 C 0.06 0.46 6.19 37.16 0.23 0.69 16 3 O -0.36 -3.47 10.22 -39.24 -0.40 -3.88 16 4 C 0.46 4.86 7.74 36.01 0.28 5.14 16 5 O -0.50 -6.73 14.26 -18.75 -0.27 -6.99 16 6 C -0.11 -0.90 5.17 -27.88 -0.14 -1.05 16 7 C -0.08 -0.84 2.48 -88.96 -0.22 -1.06 16 8 H 0.09 1.07 8.02 -51.93 -0.42 0.66 16 9 C -0.12 -1.42 5.63 -24.74 -0.14 -1.56 16 10 C -0.11 -1.61 6.43 -25.07 -0.16 -1.77 16 11 C 0.08 1.19 3.24 -66.60 -0.22 0.97 16 12 H 0.04 0.60 7.83 -51.93 -0.41 0.19 16 13 N -0.69 -12.35 6.26 -105.54 -0.66 -13.01 16 14 C 0.07 1.42 5.45 -3.83 -0.02 1.40 16 15 C 0.02 0.65 5.23 -27.88 -0.15 0.50 16 16 C -0.52 -15.02 9.11 -34.44 -0.31 -15.34 16 17 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -27.28 13.29 55.43 0.74 -26.55 16 20 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 C -0.12 -1.35 6.05 -25.61 -0.16 -1.50 16 25 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 29 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 30 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.10 0.73 8.10 -51.93 -0.42 0.31 16 32 H 0.06 0.63 8.02 -51.93 -0.42 0.21 16 33 H 0.07 0.98 7.07 -51.93 -0.37 0.62 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 1.29 8.05 -51.93 -0.42 0.87 16 36 H 0.33 5.75 8.05 -39.29 -0.32 5.44 16 37 H 0.01 0.29 8.07 -51.93 -0.42 -0.13 16 38 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 39 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.07 0.86 7.49 -51.93 -0.39 0.47 16 43 H 0.06 0.61 7.84 -51.93 -0.41 0.21 16 LS Contribution 349.30 15.07 5.26 5.26 Total: -1.00 -32.28 349.30 -8.81 -41.09 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -7.74 Total: -0.46 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -0.72 Total: -12.40 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: 0.08 Total: -39.55 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: -0.67 Total: -10.87 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.28 -8.81 -41.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173637602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.828 kcal (2) G-P(sol) polarization free energy of solvation -32.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds