Wall clock time and date at job start Mon Mar 30 2020 01:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45202 * 109.47450 * 2 1 4 4 C 1.34222 * 117.00354 * 180.02562 * 3 2 1 5 5 O 1.20829 * 119.99906 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00213 * 180.02562 * 4 3 2 7 7 C 1.53003 * 109.47151 * 179.97438 * 6 4 3 8 8 H 1.09001 * 110.43424 * 303.91343 * 7 6 4 9 9 C 1.54892 * 110.48409 * 66.45148 * 7 6 4 10 10 C 1.54891 * 102.74803 * 156.61928 * 9 7 6 11 11 C 1.54264 * 104.19776 * 322.05963 * 10 9 7 12 12 H 1.09003 * 110.03265 * 264.27870 * 11 10 9 13 13 N 1.46897 * 110.03424 * 142.89350 * 11 10 9 14 14 C 1.46893 * 111.00104 * 86.45794 * 13 11 10 15 15 C 1.53004 * 109.47285 * 180.02562 * 14 13 11 16 16 C 1.50701 * 109.47211 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99761 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99694 * 180.27574 * 16 15 14 19 19 N 1.31514 * 120.00482 * 359.71466 * 18 16 15 20 20 Si 1.86801 * 119.99746 * 179.72062 * 18 16 15 21 21 H 1.48494 * 109.47230 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47301 * 119.99669 * 20 18 16 23 23 H 1.48498 * 109.47430 * 239.99516 * 20 18 16 24 24 C 1.53878 * 106.59804 * 23.60793 * 11 10 9 25 25 H 1.09000 * 109.47046 * 59.99510 * 1 2 3 26 26 H 1.08991 * 109.47135 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46878 * 300.00138 * 1 2 3 28 28 H 1.09005 * 109.46668 * 240.00182 * 2 1 3 29 29 H 1.08996 * 109.46944 * 120.00000 * 2 1 3 30 30 H 1.08998 * 109.47012 * 59.99565 * 6 4 3 31 31 H 1.08993 * 109.46714 * 299.99550 * 6 4 3 32 32 H 1.09004 * 110.76027 * 38.30758 * 9 7 6 33 33 H 1.08999 * 110.91710 * 275.00939 * 9 7 6 34 34 H 1.08998 * 110.48831 * 203.37799 * 10 9 7 35 35 H 1.08998 * 110.48433 * 80.73428 * 10 9 7 36 36 H 1.00908 * 111.00037 * 210.40816 * 13 11 10 37 37 H 1.09000 * 109.47823 * 59.99694 * 14 13 11 38 38 H 1.09007 * 109.47029 * 299.99462 * 14 13 11 39 39 H 1.09000 * 109.47211 * 59.98987 * 15 14 13 40 40 H 1.09007 * 109.46376 * 299.99529 * 15 14 13 41 41 H 0.96995 * 120.00207 * 179.97438 * 19 18 16 42 42 H 1.08999 * 110.03445 * 119.28320 * 24 11 10 43 43 H 1.09001 * 110.03563 * 240.71958 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 0.0000 7 6 5.4487 2.8572 -0.0001 8 1 5.7990 2.2679 0.8473 9 6 5.9596 2.2505 -1.3306 10 6 7.4085 2.7910 -1.4186 11 6 7.3097 4.2296 -0.8705 12 1 7.1999 4.9359 -1.6934 13 7 8.5093 4.5531 -0.0868 14 6 9.5810 5.0642 -0.9516 15 6 10.8112 5.3886 -0.1016 16 6 11.9110 5.9124 -0.9888 17 1 11.7489 6.0042 -2.0526 18 6 13.1261 6.2684 -0.4433 19 7 13.3235 6.1563 0.8521 20 14 14.4919 6.9103 -1.5441 21 1 14.0203 6.9401 -2.9519 22 1 14.8673 8.2825 -1.1183 23 1 15.6742 6.0181 -1.4374 24 6 6.0636 4.2717 0.0314 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8900 30 1 3.5853 3.4690 0.8904 31 1 3.5845 3.4699 -0.8895 32 1 5.3633 2.6054 -2.1712 33 1 5.9555 1.1613 -1.2885 34 1 7.7502 2.7997 -2.4536 35 1 8.0772 2.1923 -0.8001 36 1 8.2944 5.2093 0.6490 37 1 9.2402 5.9674 -1.4576 38 1 9.8412 4.3085 -1.6929 39 1 11.1519 4.4852 0.4042 40 1 10.5513 6.1441 0.6400 41 1 14.1785 6.4064 1.2358 42 1 6.3490 4.5321 1.0506 43 1 5.3482 4.9984 -0.3538 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173637602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:05 Heat of formation + Delta-G solvation = -137.468097 kcal Electronic energy + Delta-G solvation = -20167.765558 eV Core-core repulsion = 17017.789336 eV Total energy + Delta-G solvation = -3149.976222 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.57968 -39.69847 -37.71190 -36.48860 -34.80461 -32.93263 -32.10110 -30.81389 -28.89679 -26.88180 -25.43745 -24.03663 -22.58356 -22.11221 -21.11278 -20.57118 -18.63976 -18.51881 -17.71811 -17.45003 -16.68780 -16.38006 -16.12005 -15.97743 -15.39105 -14.86757 -14.62696 -14.27779 -14.24370 -14.08290 -13.62500 -13.34406 -13.09477 -12.92327 -12.81485 -12.75814 -12.48464 -12.29859 -12.16109 -12.08847 -11.96639 -11.72362 -11.55332 -11.55197 -11.42172 -11.33819 -11.30048 -11.13679 -10.57554 -9.22602 -8.20921 -6.32498 1.24025 1.39562 1.40462 1.53748 1.73794 2.40081 3.12259 3.38730 3.59907 3.61177 3.82335 3.96733 4.01319 4.10400 4.31650 4.36039 4.47517 4.49752 4.54804 4.55343 4.64993 4.68159 4.79210 4.85112 4.89885 4.93202 4.96346 5.06387 5.07725 5.13705 5.17955 5.31693 5.34987 5.46522 5.51667 5.55540 5.68298 5.80296 6.16962 6.35476 6.63467 6.79350 6.85256 7.36777 8.91421 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.070344 B = 0.002451 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.951032 B =11422.180741 C =11489.418014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 O -0.364 6.364 4 C 0.459 3.541 5 O -0.538 6.538 6 C -0.100 4.100 7 C -0.072 4.072 8 H 0.066 0.934 9 C -0.110 4.110 10 C -0.115 4.115 11 C 0.078 3.922 12 H 0.045 0.955 13 N -0.694 5.694 14 C 0.086 3.914 15 C 0.031 3.969 16 C -0.544 4.544 17 H 0.060 0.940 18 C -0.001 4.001 19 N -0.932 5.932 20 Si 0.969 3.031 21 H -0.262 1.262 22 H -0.276 1.276 23 H -0.278 1.278 24 C -0.110 4.110 25 H 0.069 0.931 26 H 0.096 0.904 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.340 0.660 37 H 0.019 0.981 38 H 0.051 0.949 39 H -0.009 1.009 40 H -0.007 1.007 41 H 0.264 0.736 42 H 0.074 0.926 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.628 -7.869 -2.894 28.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.021 4.021 3 O -0.281 6.281 4 C 0.304 3.696 5 O -0.428 6.428 6 C -0.137 4.137 7 C -0.091 4.091 8 H 0.084 0.916 9 C -0.148 4.148 10 C -0.154 4.154 11 C -0.032 4.032 12 H 0.063 0.937 13 N -0.326 5.326 14 C -0.043 4.043 15 C -0.006 4.006 16 C -0.583 4.583 17 H 0.078 0.922 18 C -0.199 4.199 19 N -0.572 5.572 20 Si 0.793 3.207 21 H -0.186 1.186 22 H -0.201 1.201 23 H -0.204 1.204 24 C -0.148 4.148 25 H 0.088 0.912 26 H 0.115 0.885 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.148 0.852 31 H 0.149 0.851 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.159 0.841 37 H 0.037 0.963 38 H 0.070 0.930 39 H 0.010 0.990 40 H 0.011 0.989 41 H 0.073 0.927 42 H 0.093 0.907 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -27.094 -8.797 -2.773 28.621 hybrid contribution 1.003 0.758 -0.357 1.307 sum -26.091 -8.039 -3.131 27.480 Atomic orbital electron populations 1.21816 0.90497 1.04240 1.03760 1.23230 0.97036 0.79576 1.02268 1.86513 1.24433 1.33343 1.83837 1.24345 0.80381 0.93641 0.71223 1.90674 1.60981 1.44566 1.46533 1.21588 0.94439 0.89605 1.08071 1.21676 0.92459 0.96428 0.98545 0.91560 1.22514 0.94988 1.00081 0.97217 1.22391 0.97373 0.95682 0.99912 1.22264 0.89368 0.96420 0.95127 0.93699 1.60671 1.08318 1.49451 1.14152 1.21771 0.91459 0.96116 0.94967 1.18934 0.92396 0.94607 0.94704 1.21651 0.98823 1.43162 0.94633 0.92222 1.26004 1.01448 0.95927 0.96551 1.70115 1.25134 1.49320 1.12597 0.85349 0.78361 0.77959 0.79052 1.18587 1.20144 1.20417 1.22333 0.95654 0.96661 1.00130 0.91169 0.88515 0.91215 0.91635 0.91721 0.85211 0.85139 0.90362 0.92186 0.92498 0.92857 0.84144 0.96257 0.93018 0.99034 0.98861 0.92733 0.90749 0.88615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.29 71.98 0.74 -0.47 16 2 C 0.05 0.75 6.19 71.98 0.45 1.20 16 3 O -0.36 -6.36 10.22 -51.34 -0.52 -6.88 16 4 C 0.46 9.04 7.74 71.24 0.55 9.59 16 5 O -0.54 -14.36 14.26 21.95 0.31 -14.05 16 6 C -0.10 -1.39 5.17 29.85 0.15 -1.24 16 7 C -0.07 -1.45 2.48 -9.72 -0.02 -1.48 16 8 H 0.07 1.62 8.02 -2.39 -0.02 1.60 16 9 C -0.11 -2.53 5.63 31.89 0.18 -2.35 16 10 C -0.12 -3.27 6.43 31.67 0.20 -3.07 16 11 C 0.08 2.17 3.24 45.64 0.15 2.32 16 12 H 0.05 1.24 7.83 -2.39 -0.02 1.23 16 13 N -0.69 -25.06 6.26 -487.83 -3.05 -28.11 16 14 C 0.09 3.73 5.45 86.31 0.47 4.20 16 15 C 0.03 1.70 5.23 29.85 0.16 1.86 16 16 C -0.54 -31.83 9.11 25.60 0.23 -31.59 16 17 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 18 C 0.00 -0.09 5.46 84.65 0.46 0.38 16 19 N -0.93 -57.84 13.29 21.45 0.28 -57.56 16 20 Si 0.97 45.01 29.54 68.60 2.03 47.03 16 21 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 24 C -0.11 -2.22 6.05 31.32 0.19 -2.03 16 25 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.07 0.98 8.13 -2.38 -0.02 0.96 16 29 H 0.06 0.98 8.13 -2.39 -0.02 0.96 16 30 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.13 1.23 8.10 -2.39 -0.02 1.21 16 32 H 0.08 1.50 8.02 -2.38 -0.02 1.48 16 33 H 0.06 1.58 7.07 -2.39 -0.02 1.56 16 34 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.05 1.78 8.05 -2.39 -0.02 1.77 16 36 H 0.34 11.64 8.05 -89.69 -0.72 10.92 16 37 H 0.02 0.81 8.07 -2.39 -0.02 0.79 16 38 H 0.05 2.29 8.10 -2.38 -0.02 2.27 16 39 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 40 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 41 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 42 H 0.07 1.55 7.49 -2.39 -0.02 1.53 16 43 H 0.10 1.40 7.84 -2.39 -0.02 1.38 16 Total: -1.00 -71.13 349.30 3.20 -67.93 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 0.24 Total: 14.32 kcal Atomic # 6 Polarization: -26.59 SS G_CDS: 3.91 Total: -22.68 kcal Atomic # 7 Polarization: -82.90 SS G_CDS: -2.77 Total: -85.67 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.21 Total: -20.93 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -71.13 3.20 -67.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173637602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.536 kcal (2) G-P(sol) polarization free energy of solvation -71.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds