Wall clock time and date at job start Mon Mar 30 2020 01:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 O 1.45200 * 109.46677 * 2 1 4 4 C 1.34232 * 116.99509 * 180.02562 * 3 2 1 5 5 O 1.20824 * 120.00209 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99516 * 179.97438 * 4 3 2 7 7 C 1.53008 * 109.46871 * 179.97438 * 6 4 3 8 8 H 1.09003 * 110.53367 * 56.15988 * 7 6 4 9 9 C 1.54890 * 110.48546 * 293.54897 * 7 6 4 10 10 C 1.54887 * 102.91108 * 203.47179 * 9 7 6 11 11 C 1.54265 * 104.20056 * 37.84875 * 10 9 7 12 12 H 1.08997 * 110.03098 * 95.72357 * 11 10 9 13 13 N 1.46899 * 110.03601 * 217.10825 * 11 10 9 14 14 C 1.46900 * 110.99703 * 273.54651 * 13 11 10 15 15 C 1.52995 * 109.47086 * 179.97438 * 14 13 11 16 16 C 1.50699 * 109.47285 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00314 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00389 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99742 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00418 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46757 * 59.99837 * 20 18 16 22 22 H 1.48500 * 109.46954 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46782 * 300.00080 * 20 18 16 24 24 C 1.53877 * 106.59605 * 336.39127 * 11 10 9 25 25 H 1.09000 * 109.47205 * 60.00341 * 1 2 3 26 26 H 1.09005 * 109.46483 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47196 * 299.99955 * 1 2 3 28 28 H 1.08996 * 109.47196 * 240.00045 * 2 1 3 29 29 H 1.08992 * 109.46900 * 119.99808 * 2 1 3 30 30 H 1.09001 * 109.47176 * 60.00007 * 6 4 3 31 31 H 1.08997 * 109.47178 * 299.99872 * 6 4 3 32 32 H 1.09002 * 110.75897 * 85.06297 * 9 7 6 33 33 H 1.09006 * 110.75292 * 321.87527 * 9 7 6 34 34 H 1.09004 * 110.48468 * 156.53190 * 10 9 7 35 35 H 1.09004 * 110.48634 * 279.03637 * 10 9 7 36 36 H 1.00893 * 111.00103 * 149.59055 * 13 11 10 37 37 H 1.08996 * 109.47234 * 299.99771 * 14 13 11 38 38 H 1.09001 * 109.47558 * 59.99561 * 14 13 11 39 39 H 1.09001 * 109.47727 * 299.99752 * 15 14 13 40 40 H 1.09002 * 109.47313 * 60.00270 * 15 14 13 41 41 H 0.96997 * 120.00012 * 179.97438 * 19 18 16 42 42 H 1.08999 * 110.03493 * 119.28247 * 24 11 10 43 43 H 1.08997 * 110.03317 * 240.71381 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9375 -0.0012 7 6 5.4486 2.8575 -0.0010 8 1 5.8008 2.2694 -0.8486 9 6 5.9596 2.2508 1.3294 10 6 7.4082 2.7912 1.4224 11 6 7.3114 4.2298 0.8739 12 1 7.1989 4.9361 1.6963 13 7 8.5137 4.5531 0.0942 14 6 9.5826 5.0641 0.9627 15 6 10.8156 5.3884 0.1170 16 6 11.9120 5.9131 1.0079 17 1 11.7461 6.0057 2.0710 18 6 13.1272 6.2741 0.4659 19 7 13.3295 6.1610 -0.8287 20 14 14.4860 6.9253 1.5700 21 1 14.8361 5.8973 2.5828 22 1 15.6828 7.2399 0.7491 23 1 14.0190 8.1569 2.2558 24 6 6.0684 4.2719 -0.0323 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8899 30 1 3.5850 3.4699 0.8888 31 1 3.5844 3.4693 -0.8912 32 1 5.9557 1.1618 1.2841 33 1 5.3611 2.6032 2.1696 34 1 7.7463 2.7999 2.4586 35 1 8.0794 2.1909 0.8081 36 1 8.3014 5.2092 -0.6422 37 1 9.2400 5.9673 1.4675 38 1 9.8400 4.3085 1.7051 39 1 11.1582 4.4849 -0.3875 40 1 10.5585 6.1438 -0.6255 41 1 14.1843 6.4153 -1.2101 42 1 5.3519 4.9987 0.3503 43 1 6.3574 4.5323 -1.0505 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173637603.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:08 Heat of formation + Delta-G solvation = -117.837133 kcal Electronic energy + Delta-G solvation = -20164.283084 eV Core-core repulsion = 17015.158125 eV Total energy + Delta-G solvation = -3149.124960 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.77464 -38.63398 -36.84176 -34.94696 -32.89169 -32.19437 -30.98659 -29.30633 -27.66649 -25.61202 -23.68952 -23.38486 -21.49738 -20.50496 -20.06278 -19.55244 -17.84518 -16.97782 -16.66441 -16.28820 -15.24778 -15.05873 -14.93537 -14.50518 -14.35036 -13.69991 -13.44528 -13.31572 -13.19112 -12.77368 -12.49078 -12.25850 -12.11189 -11.93498 -11.44433 -11.29998 -11.09360 -10.94116 -10.86865 -10.83945 -10.75763 -10.63874 -10.48368 -10.47080 -10.39214 -9.89788 -9.30416 -9.11780 -8.32206 -7.75036 -5.96828 -3.99321 2.02536 2.41079 3.35270 3.39428 3.41951 4.35674 4.46278 4.50838 4.54257 4.60170 4.64580 4.83795 4.84918 4.89153 5.09707 5.25474 5.33036 5.37494 5.38825 5.51978 5.53047 5.56790 5.68094 5.72323 5.82563 5.94031 6.02251 6.16175 6.23026 6.31712 6.37721 6.43555 6.48592 6.65112 7.03806 7.56326 7.57135 7.77212 7.88335 8.03130 8.13135 8.47304 9.07849 9.64131 11.14545 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.070496 B = 0.002449 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.089889 B =11429.808033 C =11496.803044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.364 6.364 4 C 0.460 3.540 5 O -0.501 6.501 6 C -0.106 4.106 7 C -0.077 4.077 8 H 0.086 0.914 9 C -0.119 4.119 10 C -0.113 4.113 11 C 0.082 3.918 12 H 0.040 0.960 13 N -0.686 5.686 14 C 0.066 3.934 15 C 0.025 3.975 16 C -0.522 4.522 17 H 0.053 0.947 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.278 1.278 24 C -0.119 4.119 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.335 0.665 37 H 0.014 0.986 38 H 0.057 0.943 39 H 0.025 0.975 40 H 0.013 0.987 41 H 0.261 0.739 42 H 0.064 0.936 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.920 -8.822 1.671 27.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.281 6.281 4 C 0.303 3.697 5 O -0.388 6.388 6 C -0.144 4.144 7 C -0.096 4.096 8 H 0.105 0.895 9 C -0.157 4.157 10 C -0.151 4.151 11 C -0.029 4.029 12 H 0.058 0.942 13 N -0.317 5.317 14 C -0.062 4.062 15 C -0.012 4.012 16 C -0.560 4.560 17 H 0.071 0.929 18 C -0.144 4.144 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.157 4.157 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.153 0.847 37 H 0.032 0.968 38 H 0.076 0.924 39 H 0.043 0.957 40 H 0.031 0.969 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -25.342 -9.749 1.540 27.196 hybrid contribution 0.492 1.130 0.776 1.456 sum -24.849 -8.620 2.316 26.404 Atomic orbital electron populations 1.21809 0.92689 1.02960 1.03502 1.23006 0.95305 0.80370 1.02628 1.86514 1.25021 1.32324 1.84265 1.23903 0.80283 0.93198 0.72337 1.90676 1.60189 1.43237 1.44670 1.21558 0.96705 0.90494 1.05644 1.21830 0.90461 0.97217 1.00109 0.89514 1.22589 0.96383 1.00999 0.95693 1.22407 0.96166 0.95877 1.00639 1.22122 0.89506 0.96601 0.94624 0.94170 1.60766 1.07320 1.49673 1.13953 1.22180 0.92272 0.96057 0.95719 1.19065 0.90350 0.96951 0.94865 1.21151 0.97879 1.42997 0.94017 0.92858 1.25010 0.98543 0.95863 0.95001 1.69965 1.24295 1.48297 1.10711 0.86646 0.81375 0.79366 0.80522 1.20232 1.21278 1.20326 1.22424 0.96745 0.95764 1.00775 0.91486 0.90272 0.91488 0.91250 0.91256 0.87709 0.87718 0.90689 0.92328 0.92312 0.90193 0.84697 0.96814 0.92423 0.95674 0.96883 0.92965 0.91746 0.90691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 10.29 37.16 0.38 -0.39 16 2 C 0.06 0.46 6.19 37.16 0.23 0.69 16 3 O -0.36 -3.47 10.22 -39.26 -0.40 -3.87 16 4 C 0.46 4.86 7.74 36.01 0.28 5.14 16 5 O -0.50 -6.72 14.26 -18.75 -0.27 -6.99 16 6 C -0.11 -0.90 5.18 -27.88 -0.14 -1.05 16 7 C -0.08 -0.84 2.48 -88.85 -0.22 -1.06 16 8 H 0.09 1.07 8.02 -51.93 -0.42 0.65 16 9 C -0.12 -1.43 5.62 -24.74 -0.14 -1.56 16 10 C -0.11 -1.61 6.43 -25.07 -0.16 -1.77 16 11 C 0.08 1.19 3.24 -66.59 -0.22 0.98 16 12 H 0.04 0.60 7.83 -51.93 -0.41 0.19 16 13 N -0.69 -12.35 6.26 -105.55 -0.66 -13.01 16 14 C 0.07 1.42 5.45 -3.83 -0.02 1.40 16 15 C 0.03 0.67 5.23 -27.89 -0.15 0.52 16 16 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 17 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -27.28 13.29 55.43 0.74 -26.54 16 20 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 C -0.12 -1.35 6.07 -25.51 -0.15 -1.50 16 25 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 29 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 30 H 0.10 0.73 8.09 -51.93 -0.42 0.31 16 31 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.98 7.06 -51.93 -0.37 0.62 16 33 H 0.06 0.63 8.02 -51.93 -0.42 0.22 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.08 1.29 8.06 -51.93 -0.42 0.87 16 36 H 0.33 5.76 8.05 -39.30 -0.32 5.44 16 37 H 0.01 0.29 8.07 -51.93 -0.42 -0.13 16 38 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 39 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 42 H 0.06 0.61 7.84 -51.93 -0.41 0.20 16 43 H 0.07 0.86 7.49 -51.93 -0.39 0.47 16 LS Contribution 349.33 15.07 5.26 5.26 Total: -1.00 -32.22 349.33 -8.81 -41.03 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -7.74 Total: -0.40 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: -0.72 Total: -12.41 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: 0.08 Total: -39.56 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: -0.67 Total: -10.87 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.22 -8.81 -41.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173637603.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.805 kcal (2) G-P(sol) polarization free energy of solvation -32.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds