Wall clock time and date at job start Mon Mar 30 2020 01:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45200 * 109.47470 * 2 1 4 4 C 1.34236 * 117.00016 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00049 * 359.97438 * 4 3 2 6 6 C 1.50696 * 119.99819 * 180.02562 * 4 3 2 7 7 C 1.53000 * 109.47151 * 179.97438 * 6 4 3 8 8 H 1.09006 * 110.53807 * 52.38528 * 7 6 4 9 9 C 1.54265 * 110.48514 * 289.77537 * 7 6 4 10 10 C 1.53877 * 106.59605 * 217.71057 * 9 7 6 11 11 C 1.54463 * 106.68421 * 0.15594 * 10 9 7 12 12 H 1.09003 * 110.40626 * 264.75463 * 11 10 9 13 13 N 1.46900 * 110.65967 * 142.05489 * 11 10 9 14 14 C 1.46907 * 111.00130 * 189.19113 * 13 11 10 15 15 C 1.46897 * 111.00391 * 65.24005 * 13 11 10 16 16 C 1.50696 * 109.47420 * 190.00100 * 15 13 11 17 17 H 1.07999 * 120.00109 * 359.97438 * 16 15 13 18 18 C 1.37882 * 120.00019 * 179.97438 * 16 15 13 19 19 N 1.31513 * 120.00096 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99987 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47101 * 60.00033 * 20 18 16 22 22 H 1.48500 * 109.47180 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46723 * 300.00026 * 20 18 16 24 24 C 1.54887 * 110.48663 * 174.99519 * 7 6 4 25 25 H 1.08998 * 109.46597 * 59.99614 * 1 2 3 26 26 H 1.08999 * 109.47179 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46853 * 299.99995 * 1 2 3 28 28 H 1.09005 * 109.47018 * 239.99659 * 2 1 3 29 29 H 1.09004 * 109.47248 * 120.00538 * 2 1 3 30 30 H 1.09004 * 109.47450 * 59.99641 * 6 4 3 31 31 H 1.09008 * 109.46975 * 299.99647 * 6 4 3 32 32 H 1.08995 * 110.03137 * 336.98981 * 9 7 6 33 33 H 1.08998 * 110.03049 * 98.37670 * 9 7 6 34 34 H 1.08999 * 110.03493 * 119.28247 * 10 9 7 35 35 H 1.09003 * 110.03187 * 240.66884 * 10 9 7 36 36 H 1.09006 * 109.46984 * 60.00305 * 14 13 11 37 37 H 1.08999 * 109.47212 * 179.97438 * 14 13 11 38 38 H 1.08995 * 109.47002 * 300.00250 * 14 13 11 39 39 H 1.09009 * 109.46786 * 310.00081 * 15 13 11 40 40 H 1.08999 * 109.47540 * 69.99638 * 15 13 11 41 41 H 0.96993 * 120.00137 * 180.02562 * 19 18 16 42 42 H 1.09002 * 110.75856 * 274.93753 * 24 7 6 43 43 H 1.09006 * 110.75640 * 38.12739 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3449 1.5447 -0.0005 5 8 4.0809 0.5865 -0.0005 6 6 3.9209 2.9373 0.0000 7 6 5.4488 2.8572 -0.0001 8 1 5.7980 2.2153 -0.8090 9 6 5.9624 2.3401 1.3595 10 6 7.2518 3.1212 1.6682 11 6 7.4767 4.0904 0.4867 12 1 8.1556 3.6492 -0.2430 13 7 7.9994 5.3775 0.9645 14 6 8.0110 6.3743 -0.1146 15 6 9.3379 5.2181 1.5483 16 6 9.7381 6.4940 2.2431 17 1 9.0656 7.3390 2.2500 18 6 10.9629 6.5827 2.8701 19 7 11.7821 5.5539 2.8613 20 14 11.4587 8.1641 3.7320 21 1 10.4820 8.4684 4.8083 22 1 12.8119 8.0029 4.3221 23 1 11.4767 9.2781 2.7503 24 6 6.0658 4.2722 -0.1261 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.5854 3.4690 0.8904 31 1 3.5846 3.4699 -0.8896 32 1 5.2189 2.5257 2.1346 33 1 6.1773 1.2733 1.2962 34 1 7.1340 3.6858 2.5930 35 1 8.0931 2.4336 1.7553 36 1 6.9957 6.5241 -0.4818 37 1 8.4020 7.3177 0.2665 38 1 8.6435 6.0208 -0.9289 39 1 9.3249 4.4005 2.2691 40 1 10.0547 4.9944 0.7582 41 1 12.6436 5.6161 3.3027 42 1 6.1346 4.5720 -1.1719 43 1 5.4872 4.9982 0.4451 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173650044.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:10 Heat of formation + Delta-G solvation = -105.017745 kcal Electronic energy + Delta-G solvation = -20781.419997 eV Core-core repulsion = 17632.850927 eV Total energy + Delta-G solvation = -3148.569069 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.66842 -38.58297 -36.80571 -35.15974 -32.51587 -32.11278 -30.80042 -28.48328 -26.64703 -26.41125 -24.14911 -23.18327 -21.35504 -21.24255 -19.68125 -18.87471 -17.72113 -16.90870 -16.41829 -16.28388 -15.57921 -14.95606 -14.55929 -14.47773 -13.87608 -13.31807 -13.28975 -13.17935 -13.07224 -12.71670 -12.45289 -12.09803 -11.91457 -11.86005 -11.61128 -11.16188 -11.09542 -10.80465 -10.78420 -10.75248 -10.65917 -10.48853 -10.44386 -10.33054 -10.20521 -9.98012 -9.65715 -9.13335 -8.39053 -7.17478 -5.98668 -3.99766 2.12649 2.51026 3.35516 3.39448 3.42368 4.44275 4.49046 4.61018 4.66918 4.71605 4.77562 4.94209 4.95589 5.21018 5.32750 5.36850 5.38393 5.44242 5.53257 5.53561 5.63860 5.80985 5.89026 5.98589 6.03762 6.11817 6.17477 6.24554 6.29740 6.43613 6.46268 6.62203 6.69214 6.76853 6.87090 7.40025 7.41038 7.66047 7.85327 8.16480 8.27120 8.62535 9.07919 9.64007 11.12215 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.046623 B = 0.003051 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.417760 B = 9175.495957 C = 9317.084403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.363 6.363 4 C 0.460 3.540 5 O -0.503 6.503 6 C -0.105 4.105 7 C -0.081 4.081 8 H 0.081 0.919 9 C -0.112 4.112 10 C -0.114 4.114 11 C 0.081 3.919 12 H 0.034 0.966 13 N -0.534 5.534 14 C 0.037 3.963 15 C 0.191 3.809 16 C -0.506 4.506 17 H 0.062 0.938 18 C 0.054 3.946 19 N -0.899 5.899 20 Si 0.898 3.102 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.278 1.278 24 C -0.109 4.109 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.046 0.954 37 H 0.072 0.928 38 H 0.008 0.992 39 H 0.033 0.967 40 H -0.012 1.012 41 H 0.261 0.739 42 H 0.060 0.940 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.179 -8.283 -7.048 22.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.281 6.281 4 C 0.303 3.697 5 O -0.390 6.390 6 C -0.142 4.142 7 C -0.100 4.100 8 H 0.099 0.901 9 C -0.150 4.150 10 C -0.152 4.152 11 C -0.028 4.028 12 H 0.051 0.949 13 N -0.259 5.259 14 C -0.112 4.112 15 C 0.066 3.934 16 C -0.545 4.545 17 H 0.080 0.920 18 C -0.147 4.147 19 N -0.539 5.539 20 Si 0.725 3.275 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.147 4.147 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.126 0.874 31 H 0.122 0.878 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.091 0.909 38 H 0.027 0.973 39 H 0.051 0.949 40 H 0.006 0.994 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -20.097 -8.494 -6.603 22.796 hybrid contribution 1.010 0.273 -0.150 1.057 sum -19.087 -8.221 -6.754 21.852 Atomic orbital electron populations 1.21804 0.92730 1.02897 1.03517 1.22994 0.95282 0.80493 1.02562 1.86521 1.25081 1.32201 1.84282 1.23983 0.80222 0.93290 0.72191 1.90669 1.60259 1.43261 1.44844 1.21561 0.96610 0.90270 1.05795 1.21837 0.90764 0.97931 0.99511 0.90070 1.22165 0.97471 0.99963 0.95431 1.22167 0.96348 0.97100 0.99580 1.22386 0.94151 0.91302 0.94968 0.94858 1.62262 1.28461 1.05585 1.29547 1.22210 0.98683 0.97627 0.92665 1.19734 0.81978 0.97899 0.93783 1.21142 1.00975 0.98951 1.33433 0.91974 1.24995 0.96510 0.96596 0.96590 1.69951 1.09491 1.30062 1.44393 0.86571 0.77475 0.83533 0.79876 1.20185 1.21415 1.20338 1.22598 0.96578 0.95246 1.00254 0.91521 0.90331 0.91444 0.91356 0.91264 0.87409 0.87783 0.92404 0.91629 0.90345 0.92300 0.93531 0.90885 0.97338 0.94869 0.99428 0.92931 0.92096 0.90246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 10.29 37.16 0.38 -0.50 16 2 C 0.06 0.52 6.19 37.16 0.23 0.75 16 3 O -0.36 -3.86 10.22 -39.27 -0.40 -4.26 16 4 C 0.46 5.44 7.77 36.00 0.28 5.72 16 5 O -0.50 -7.33 14.76 -18.75 -0.28 -7.61 16 6 C -0.10 -1.06 5.21 -27.88 -0.15 -1.21 16 7 C -0.08 -1.03 2.45 -88.96 -0.22 -1.25 16 8 H 0.08 1.08 7.90 -51.93 -0.41 0.67 16 9 C -0.11 -1.61 5.57 -25.61 -0.14 -1.75 16 10 C -0.11 -1.99 5.26 -25.51 -0.13 -2.12 16 11 C 0.08 1.47 2.59 -65.95 -0.17 1.30 16 12 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 13 N -0.53 -11.57 4.58 -234.20 -1.07 -12.64 16 14 C 0.04 0.72 9.09 60.07 0.55 1.26 16 15 C 0.19 5.05 4.61 -4.98 -0.02 5.02 16 16 C -0.51 -14.35 8.46 -34.44 -0.29 -14.64 16 17 H 0.06 1.73 7.12 -52.49 -0.37 1.36 16 18 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 19 N -0.90 -27.06 13.29 55.43 0.74 -26.33 16 20 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 C -0.11 -1.52 4.44 -24.74 -0.11 -1.63 16 25 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 29 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 30 H 0.11 0.98 7.95 -51.93 -0.41 0.57 16 31 H 0.10 0.84 8.14 -51.92 -0.42 0.42 16 32 H 0.06 0.78 7.71 -51.93 -0.40 0.38 16 33 H 0.06 0.98 7.77 -51.93 -0.40 0.57 16 34 H 0.08 1.49 8.01 -51.93 -0.42 1.08 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.05 0.76 6.92 -51.93 -0.36 0.40 16 37 H 0.07 1.53 6.76 -51.93 -0.35 1.18 16 38 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 39 H 0.03 0.93 7.02 -51.92 -0.36 0.56 16 40 H -0.01 -0.35 8.12 -51.93 -0.42 -0.77 16 41 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.06 0.78 7.97 -51.93 -0.41 0.37 16 43 H 0.08 1.10 8.05 -51.93 -0.42 0.69 16 LS Contribution 343.97 15.07 5.18 5.18 Total: -1.00 -31.70 343.97 -8.43 -40.13 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -7.68 Total: -3.67 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: 0.11 Total: -7.60 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: -0.34 Total: -38.97 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: -0.68 Total: -11.87 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.70 -8.43 -40.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173650044.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.891 kcal (2) G-P(sol) polarization free energy of solvation -31.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds