Wall clock time and date at job start Mon Mar 30 2020 01:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45199 * 109.47151 * 2 1 4 4 C 1.34229 * 117.00140 * 180.02562 * 3 2 1 5 5 O 1.20825 * 119.99828 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99871 * 180.02562 * 4 3 2 7 7 C 1.52999 * 109.47087 * 180.02562 * 6 4 3 8 8 H 1.09001 * 110.53567 * 307.61002 * 7 6 4 9 9 C 1.54465 * 110.66276 * 70.23513 * 7 6 4 10 10 C 1.53884 * 106.68445 * 142.05701 * 9 7 6 11 11 C 1.54268 * 106.59747 * 0.15877 * 10 9 7 12 12 H 1.08994 * 110.48867 * 95.07054 * 11 10 9 13 13 N 1.46897 * 110.48233 * 217.71675 * 11 10 9 14 14 C 1.46905 * 110.99876 * 300.51878 * 13 11 10 15 15 C 1.46903 * 110.99694 * 176.56892 * 13 11 10 16 16 C 1.50707 * 109.46934 * 189.99633 * 15 13 11 17 17 H 1.07999 * 120.00135 * 0.02562 * 16 15 13 18 18 C 1.37874 * 119.99752 * 180.02562 * 16 15 13 19 19 N 1.31519 * 120.00227 * 179.97438 * 18 16 15 20 20 Si 1.86806 * 120.00315 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46986 * 90.00223 * 20 18 16 22 22 H 1.48496 * 109.47131 * 209.99973 * 20 18 16 23 23 H 1.48503 * 109.46742 * 330.00155 * 20 18 16 24 24 C 1.54890 * 110.48964 * 185.00172 * 7 6 4 25 25 H 1.08990 * 109.47527 * 59.99983 * 1 2 3 26 26 H 1.09004 * 109.47101 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46980 * 299.99719 * 1 2 3 28 28 H 1.09004 * 109.46980 * 240.00281 * 2 1 3 29 29 H 1.09004 * 109.47666 * 120.00018 * 2 1 3 30 30 H 1.08991 * 109.47655 * 60.00042 * 6 4 3 31 31 H 1.09006 * 109.47028 * 299.99779 * 6 4 3 32 32 H 1.08992 * 109.85831 * 22.81630 * 9 7 6 33 33 H 1.09004 * 110.16154 * 261.45757 * 9 7 6 34 34 H 1.09002 * 110.02706 * 240.87477 * 10 9 7 35 35 H 1.08997 * 110.03450 * 119.44222 * 10 9 7 36 36 H 1.08992 * 109.46719 * 64.41514 * 14 13 11 37 37 H 1.09005 * 109.47069 * 184.41652 * 14 13 11 38 38 H 1.09003 * 109.47210 * 304.41364 * 14 13 11 39 39 H 1.08991 * 109.47311 * 309.99618 * 15 13 11 40 40 H 1.09001 * 109.47193 * 69.99860 * 15 13 11 41 41 H 0.96995 * 120.00634 * 179.97438 * 19 18 16 42 42 H 1.08993 * 110.76008 * 85.05407 * 24 7 6 43 43 H 1.09008 * 110.75306 * 321.87435 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9206 2.9374 0.0000 7 6 5.4485 2.8574 -0.0014 8 1 5.7985 2.2147 0.8064 9 6 5.9660 2.3419 -1.3624 10 6 7.2522 3.1278 -1.6725 11 6 7.4760 4.0914 -0.4887 12 1 8.1555 3.6494 0.2398 13 7 7.9980 5.3790 -0.9657 14 6 9.2738 5.2007 -1.6719 15 6 8.1386 6.3330 0.1426 16 6 8.4376 7.7032 -0.4091 17 1 8.5150 7.8507 -1.4762 18 6 8.6124 8.7686 0.4485 19 7 8.8738 9.9643 -0.0328 20 14 8.4779 8.5137 2.2942 21 1 9.8137 8.1714 2.8452 22 1 7.9844 9.7609 2.9314 23 1 7.5286 7.4062 2.5730 24 6 6.0657 4.2724 0.1256 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 3.5852 3.4691 0.8904 31 1 3.5842 3.4701 -0.8896 32 1 5.2205 2.5259 -2.1358 33 1 6.1854 1.2759 -1.3016 34 1 7.1306 3.6932 -2.5964 35 1 8.0958 2.4433 -1.7613 36 1 9.1108 4.6090 -2.5726 37 1 9.6769 6.1758 -1.9456 38 1 9.9803 4.6851 -1.0213 39 1 7.2109 6.3658 0.7137 40 1 8.9546 6.0171 0.7926 41 1 8.9963 10.7138 0.5705 42 1 6.1353 4.5710 1.1715 43 1 5.4864 4.9990 -0.4442 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173650046.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:11 Heat of formation + Delta-G solvation = -120.046365 kcal Electronic energy + Delta-G solvation = -20917.353005 eV Core-core repulsion = 17768.132246 eV Total energy + Delta-G solvation = -3149.220759 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.58644 -39.94507 -37.82331 -36.68678 -34.55491 -32.89797 -31.92867 -29.90773 -29.57584 -27.02517 -25.79448 -24.07298 -22.82465 -22.13719 -20.85262 -20.33613 -18.92174 -18.62794 -17.77933 -17.30379 -16.89061 -16.41003 -16.29083 -15.59782 -15.27274 -14.95962 -14.35029 -14.33393 -14.22976 -14.08742 -13.74900 -13.49890 -13.30597 -12.96852 -12.87417 -12.73678 -12.51792 -12.47012 -12.13317 -12.01580 -11.87003 -11.74814 -11.69127 -11.51362 -11.48734 -11.40145 -11.28253 -11.19485 -10.76407 -9.00146 -8.26199 -6.28864 1.22011 1.35598 1.36762 1.47956 1.72396 2.35924 3.06934 3.24710 3.55108 3.61192 3.86351 4.01677 4.04979 4.10204 4.26525 4.32013 4.36085 4.50424 4.55204 4.60027 4.62838 4.70329 4.77087 4.84260 4.86956 4.92795 4.93290 4.96002 5.04844 5.09077 5.15485 5.18857 5.23329 5.31549 5.40782 5.49065 5.53863 5.58985 6.05143 6.40952 6.72245 6.77346 6.78029 7.34668 8.90510 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.026427 B = 0.003695 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.269361 B = 7576.771391 C = 8245.701956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.365 6.365 4 C 0.465 3.535 5 O -0.534 6.534 6 C -0.103 4.103 7 C -0.071 4.071 8 H 0.077 0.923 9 C -0.105 4.105 10 C -0.109 4.109 11 C 0.070 3.930 12 H 0.032 0.968 13 N -0.537 5.537 14 C 0.038 3.962 15 C 0.170 3.830 16 C -0.513 4.513 17 H 0.038 0.962 18 C 0.007 3.993 19 N -0.949 5.949 20 Si 0.944 3.056 21 H -0.272 1.272 22 H -0.281 1.281 23 H -0.245 1.245 24 C -0.106 4.106 25 H 0.068 0.932 26 H 0.098 0.902 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.048 0.952 38 H 0.016 0.984 39 H 0.038 0.962 40 H -0.022 1.022 41 H 0.266 0.734 42 H 0.062 0.938 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.886 -20.682 1.352 25.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 O -0.283 6.283 4 C 0.310 3.690 5 O -0.424 6.424 6 C -0.141 4.141 7 C -0.090 4.090 8 H 0.095 0.905 9 C -0.143 4.143 10 C -0.147 4.147 11 C -0.038 4.038 12 H 0.050 0.950 13 N -0.261 5.261 14 C -0.110 4.110 15 C 0.043 3.957 16 C -0.552 4.552 17 H 0.056 0.944 18 C -0.190 4.190 19 N -0.590 5.590 20 Si 0.768 3.232 21 H -0.198 1.198 22 H -0.206 1.206 23 H -0.169 1.169 24 C -0.144 4.144 25 H 0.087 0.913 26 H 0.117 0.883 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.142 0.858 31 H 0.141 0.859 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.067 0.933 38 H 0.034 0.966 39 H 0.056 0.944 40 H -0.004 1.004 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.009 -20.637 1.056 25.540 hybrid contribution 1.085 0.039 1.172 1.597 sum -13.924 -20.598 2.228 24.963 Atomic orbital electron populations 1.21824 0.90638 1.04277 1.03679 1.23252 0.96966 0.79430 1.02438 1.86527 1.24388 1.33562 1.83786 1.24140 0.80424 0.93265 0.71203 1.90645 1.60924 1.44234 1.46603 1.21550 0.94830 0.89976 1.07709 1.21728 0.92420 0.96041 0.98858 0.90465 1.22124 0.96606 0.99326 0.96281 1.22130 0.98026 0.96610 0.97905 1.22592 0.95918 0.89213 0.96104 0.95000 1.62034 1.27718 1.09086 1.27256 1.22205 0.89856 1.00775 0.98155 1.19964 0.95136 0.90816 0.89768 1.21288 1.47059 0.92733 0.94093 0.94371 1.25829 0.94508 0.94588 1.04028 1.70049 1.50813 1.01067 1.37108 0.85759 0.79422 0.78523 0.79530 1.19753 1.20606 1.16872 1.22527 0.94924 0.96450 1.00463 0.91324 0.88319 0.91331 0.91418 0.91461 0.85756 0.85859 0.91298 0.91659 0.91191 0.91681 0.90419 0.93329 0.96553 0.94382 1.00450 0.92488 0.91937 0.90393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 10.29 71.98 0.74 -0.69 16 2 C 0.05 0.81 6.19 71.98 0.45 1.26 16 3 O -0.37 -7.20 10.22 -51.41 -0.53 -7.72 16 4 C 0.46 10.12 7.78 71.24 0.55 10.68 16 5 O -0.53 -14.41 14.78 21.97 0.32 -14.09 16 6 C -0.10 -1.93 5.21 29.85 0.16 -1.78 16 7 C -0.07 -1.66 2.45 -9.65 -0.02 -1.68 16 8 H 0.08 1.88 7.90 -2.39 -0.02 1.86 16 9 C -0.11 -2.50 5.59 31.39 0.18 -2.32 16 10 C -0.11 -2.94 5.36 31.32 0.17 -2.77 16 11 C 0.07 2.30 2.58 45.99 0.12 2.41 16 12 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 13 N -0.54 -22.13 4.58 -895.27 -4.10 -26.23 16 14 C 0.04 1.49 9.10 127.69 1.16 2.65 16 15 C 0.17 8.16 3.66 85.56 0.31 8.47 16 16 C -0.51 -29.76 8.95 25.60 0.23 -29.53 16 17 H 0.04 2.47 7.41 -2.91 -0.02 2.45 16 18 C 0.01 0.44 5.47 84.65 0.46 0.90 16 19 N -0.95 -59.58 13.96 21.45 0.30 -59.28 16 20 Si 0.94 43.99 27.47 68.60 1.88 45.88 16 21 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 22 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 23 H -0.25 -10.49 6.54 99.48 0.65 -9.84 16 24 C -0.11 -3.02 4.73 31.89 0.15 -2.87 16 25 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 27 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.07 1.05 8.13 -2.38 -0.02 1.03 16 29 H 0.07 1.04 8.13 -2.38 -0.02 1.02 16 30 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.12 1.99 7.96 -2.38 -0.02 1.97 16 32 H 0.07 1.50 7.71 -2.39 -0.02 1.49 16 33 H 0.06 1.58 7.80 -2.39 -0.02 1.57 16 34 H 0.07 1.99 7.61 -2.39 -0.02 1.97 16 35 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.08 2.53 7.03 -2.39 -0.02 2.52 16 37 H 0.05 2.17 6.67 -2.38 -0.02 2.15 16 38 H 0.02 0.59 8.13 -2.39 -0.02 0.57 16 39 H 0.04 1.78 5.68 -2.39 -0.01 1.76 16 40 H -0.02 -1.07 7.55 -2.39 -0.02 -1.09 16 41 H 0.27 15.57 8.31 -92.71 -0.77 14.79 16 42 H 0.06 1.80 7.72 -2.39 -0.02 1.79 16 43 H 0.08 2.35 8.06 -2.38 -0.02 2.33 16 Total: -1.00 -69.14 339.75 3.44 -65.70 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: 0.90 Total: 11.03 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: 4.65 Total: -15.28 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -3.80 Total: -85.51 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.20 Total: -21.81 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.88 Total: 45.88 kcal Total: -69.14 3.44 -65.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173650046.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.347 kcal (2) G-P(sol) polarization free energy of solvation -69.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds