Wall clock time and date at job start Mon Mar 30 2020 01:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45206 * 109.46922 * 2 1 4 4 C 1.34228 * 116.99632 * 180.02562 * 3 2 1 5 5 O 1.20819 * 120.00346 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99761 * 179.97438 * 4 3 2 7 7 C 1.52995 * 109.47490 * 179.97438 * 6 4 3 8 8 H 1.09002 * 110.01371 * 54.92957 * 7 6 4 9 9 C 1.54272 * 110.03053 * 293.54771 * 7 6 4 10 10 C 1.54892 * 104.19171 * 217.10262 * 9 7 6 11 11 C 1.54884 * 102.74948 * 37.94168 * 10 9 7 12 12 H 1.08997 * 110.49346 * 80.86653 * 11 10 9 13 13 N 1.46904 * 110.48422 * 203.38062 * 11 10 9 14 14 C 1.46902 * 111.00069 * 174.59030 * 13 11 10 15 15 C 1.46899 * 110.99886 * 298.53988 * 13 11 10 16 16 C 1.50703 * 109.47180 * 170.00074 * 15 13 11 17 17 H 1.07994 * 119.99603 * 0.02562 * 16 15 13 18 18 C 1.37875 * 119.99838 * 180.02562 * 16 15 13 19 19 N 1.31513 * 120.00380 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99848 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47261 * 239.99776 * 20 18 16 23 23 H 1.48500 * 109.47454 * 119.99769 * 20 18 16 24 24 C 1.53872 * 110.03525 * 176.37552 * 7 6 4 25 25 H 1.09003 * 109.46768 * 60.00275 * 1 2 3 26 26 H 1.09000 * 109.46823 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47327 * 300.00262 * 1 2 3 28 28 H 1.08991 * 109.47159 * 239.99661 * 2 1 3 29 29 H 1.09003 * 109.47136 * 119.99328 * 2 1 3 30 30 H 1.09003 * 109.47305 * 59.98917 * 6 4 3 31 31 H 1.09004 * 109.47064 * 299.99769 * 6 4 3 32 32 H 1.08999 * 110.48926 * 98.42270 * 9 7 6 33 33 H 1.08999 * 110.59539 * 335.83148 * 9 7 6 34 34 H 1.08994 * 110.75790 * 279.62474 * 10 9 7 35 35 H 1.09003 * 110.91400 * 156.32747 * 10 9 7 36 36 H 1.08997 * 109.47274 * 183.95190 * 14 13 11 37 37 H 1.08999 * 109.47167 * 303.95879 * 14 13 11 38 38 H 1.09004 * 109.46902 * 63.95344 * 14 13 11 39 39 H 1.09005 * 109.47198 * 50.00271 * 15 13 11 40 40 H 1.08998 * 109.47329 * 290.00218 * 15 13 11 41 41 H 0.97001 * 119.99667 * 0.02562 * 19 18 16 42 42 H 1.08995 * 110.03446 * 0.02562 * 24 7 6 43 43 H 1.09002 * 110.02999 * 238.56571 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9375 -0.0012 7 6 5.4486 2.8575 -0.0010 8 1 5.7904 2.2499 -0.8390 9 6 5.9459 2.2522 1.3280 10 6 7.2440 3.0374 1.6406 11 6 6.8925 4.4749 1.1833 12 1 6.3101 4.9872 1.9490 13 7 8.1147 5.2303 0.8774 14 6 7.7919 6.5510 0.3210 15 6 8.9683 5.3544 2.0665 16 6 10.3097 5.9123 1.6658 17 1 10.5080 6.1512 0.6315 18 6 11.2837 6.1177 2.6199 19 7 11.0420 5.8273 3.8796 20 14 12.9461 6.8099 2.1234 21 1 12.9643 7.0515 0.6582 22 1 14.0125 5.8390 2.4778 23 1 13.1836 8.0891 2.8394 24 6 6.0504 4.2706 -0.0931 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8901 30 1 3.5849 3.4700 0.8887 31 1 3.5844 3.4693 -0.8912 32 1 6.1619 1.1908 1.2066 33 1 5.2095 2.4030 2.1173 34 1 8.0819 2.6432 1.0656 35 1 7.4650 3.0147 2.7077 36 1 8.7127 7.0612 0.0385 37 1 7.1589 6.4301 -0.5581 38 1 7.2643 7.1417 1.0700 39 1 9.1040 4.3727 2.5204 40 1 8.4959 6.0246 2.7846 41 1 10.1786 5.4682 4.1374 42 1 5.2540 5.0135 -0.1373 43 1 6.6851 4.3494 -0.9757 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173650048.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:16 Heat of formation + Delta-G solvation = -107.682420 kcal Electronic energy + Delta-G solvation = -20865.380284 eV Core-core repulsion = 17716.695666 eV Total energy + Delta-G solvation = -3148.684618 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.72601 -38.71124 -36.85855 -35.31138 -32.70018 -32.15377 -30.82279 -28.43727 -26.56787 -26.27519 -24.02964 -23.20685 -21.63333 -21.27114 -19.80116 -18.98205 -17.80968 -16.92512 -16.75333 -16.55544 -15.47575 -14.98684 -14.69044 -14.01308 -13.86802 -13.57635 -13.37826 -13.25922 -13.10582 -12.92694 -12.44230 -12.06750 -12.03903 -11.88071 -11.68835 -11.27120 -11.01692 -10.91729 -10.81241 -10.71751 -10.64806 -10.51991 -10.43534 -10.34433 -10.21592 -10.09515 -9.94171 -8.61295 -8.32596 -7.27959 -6.33140 -4.01196 2.08927 2.47538 3.46473 3.50674 3.64465 4.43511 4.55055 4.58435 4.62132 4.66865 4.73579 4.88862 4.93217 5.03946 5.21321 5.33995 5.39852 5.41744 5.43088 5.60852 5.64527 5.69700 5.81828 5.85187 5.98474 6.04749 6.12239 6.15690 6.24536 6.33613 6.37609 6.51175 6.57847 6.68279 6.77931 7.08167 7.16452 7.62502 7.87697 8.05154 8.39066 8.64300 8.91953 9.69446 11.06222 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.052027 B = 0.003082 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.054844 B = 9083.904653 C = 9316.894477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.364 6.364 4 C 0.460 3.540 5 O -0.502 6.502 6 C -0.107 4.107 7 C -0.078 4.078 8 H 0.081 0.919 9 C -0.114 4.114 10 C -0.112 4.112 11 C 0.077 3.923 12 H 0.032 0.968 13 N -0.528 5.528 14 C 0.038 3.962 15 C 0.180 3.820 16 C -0.586 4.586 17 H 0.057 0.943 18 C 0.012 3.988 19 N -0.917 5.917 20 Si 1.077 2.923 21 H -0.289 1.289 22 H -0.287 1.287 23 H -0.289 1.289 24 C -0.110 4.110 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.047 0.953 38 H 0.008 0.992 39 H 0.025 0.975 40 H -0.023 1.023 41 H 0.267 0.733 42 H 0.059 0.941 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.079 -8.001 -8.281 23.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.281 6.281 4 C 0.303 3.697 5 O -0.389 6.389 6 C -0.144 4.144 7 C -0.097 4.097 8 H 0.100 0.900 9 C -0.152 4.152 10 C -0.150 4.150 11 C -0.032 4.032 12 H 0.050 0.950 13 N -0.252 5.252 14 C -0.111 4.111 15 C 0.055 3.945 16 C -0.624 4.624 17 H 0.075 0.925 18 C -0.191 4.191 19 N -0.554 5.554 20 Si 0.906 3.094 21 H -0.215 1.215 22 H -0.214 1.214 23 H -0.215 1.215 24 C -0.148 4.148 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.066 0.934 38 H 0.027 0.973 39 H 0.043 0.957 40 H -0.005 1.005 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.133 -8.124 -8.054 21.440 hybrid contribution -2.032 -0.153 0.121 2.042 sum -20.165 -8.277 -7.933 23.197 Atomic orbital electron populations 1.21808 0.92714 1.02925 1.03505 1.22999 0.95292 0.80445 1.02590 1.86519 1.25065 1.32257 1.84280 1.23950 0.80245 0.93251 0.72266 1.90669 1.60222 1.43234 1.44744 1.21681 0.96797 0.90353 1.05611 1.21611 0.90656 0.97517 0.99874 0.90025 1.22396 0.97303 1.00037 0.95469 1.22507 0.97310 0.94232 1.00976 1.22436 0.91287 0.94707 0.94739 0.94995 1.62177 1.13848 1.16212 1.32976 1.22204 1.00691 0.90704 0.97456 1.19862 0.92360 0.95821 0.86467 1.22041 0.98241 1.45666 0.96491 0.92465 1.25843 1.03800 0.95884 0.93594 1.70734 1.25844 1.41617 1.17207 0.83429 0.74783 0.76414 0.74789 1.21474 1.21374 1.21511 1.22252 0.98442 0.94510 0.99607 0.91505 0.90296 0.91473 0.91306 0.91260 0.87679 0.87795 0.90996 0.92504 0.90323 0.91947 0.90845 0.93408 0.97314 0.95729 1.00547 0.92307 0.92246 0.90234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 10.29 37.16 0.38 -0.50 16 2 C 0.06 0.51 6.19 37.16 0.23 0.74 16 3 O -0.36 -3.85 10.22 -39.25 -0.40 -4.25 16 4 C 0.46 5.41 7.73 36.01 0.28 5.69 16 5 O -0.50 -7.27 14.50 -18.74 -0.27 -7.54 16 6 C -0.11 -1.08 4.94 -27.88 -0.14 -1.22 16 7 C -0.08 -0.99 2.56 -89.50 -0.23 -1.21 16 8 H 0.08 1.08 7.97 -51.93 -0.41 0.67 16 9 C -0.11 -1.63 5.36 -25.07 -0.13 -1.76 16 10 C -0.11 -1.96 5.30 -24.74 -0.13 -2.09 16 11 C 0.08 1.39 2.58 -66.05 -0.17 1.22 16 12 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 13 N -0.53 -11.54 4.58 -234.33 -1.07 -12.62 16 14 C 0.04 0.75 9.14 60.07 0.55 1.30 16 15 C 0.18 4.74 3.90 -4.98 -0.02 4.72 16 16 C -0.59 -16.85 8.52 -34.44 -0.29 -17.15 16 17 H 0.06 1.65 7.10 -52.49 -0.37 1.28 16 18 C 0.01 0.35 5.46 -17.82 -0.10 0.25 16 19 N -0.92 -28.34 13.65 55.43 0.76 -27.58 16 20 Si 1.08 25.79 29.90 -169.99 -5.08 20.71 16 21 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 C -0.11 -1.54 4.87 -25.61 -0.12 -1.67 16 25 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.58 8.13 -51.93 -0.42 0.15 16 29 H 0.07 0.60 8.13 -51.93 -0.42 0.17 16 30 H 0.11 0.95 8.04 -51.93 -0.42 0.54 16 31 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.07 1.07 7.60 -51.93 -0.39 0.67 16 33 H 0.06 0.76 7.79 -51.93 -0.40 0.36 16 34 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 35 H 0.06 1.14 7.71 -51.93 -0.40 0.74 16 36 H 0.07 1.57 6.86 -51.93 -0.36 1.21 16 37 H 0.05 0.78 6.78 -51.93 -0.35 0.43 16 38 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 39 H 0.02 0.68 6.47 -51.93 -0.34 0.34 16 40 H -0.02 -0.65 7.99 -51.93 -0.41 -1.06 16 41 H 0.27 8.23 7.22 -40.82 -0.29 7.93 16 42 H 0.06 0.72 7.67 -51.93 -0.40 0.32 16 43 H 0.08 1.18 7.67 -51.93 -0.40 0.78 16 LS Contribution 341.14 15.07 5.14 5.14 Total: -1.00 -32.57 341.14 -8.38 -40.95 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -7.55 Total: -3.14 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: 0.10 Total: -11.67 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: -0.32 Total: -40.20 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: -0.67 Total: -11.79 kcal Atomic # 14 Polarization: 25.79 SS G_CDS: -5.08 Total: 20.71 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.57 -8.38 -40.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173650048.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.731 kcal (2) G-P(sol) polarization free energy of solvation -32.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds