Wall clock time and date at job start Mon Mar 30 2020 01:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45206 * 109.46922 * 2 1 4 4 C 1.34228 * 116.99632 * 180.02562 * 3 2 1 5 5 O 1.20819 * 120.00346 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99761 * 179.97438 * 4 3 2 7 7 C 1.52995 * 109.47490 * 179.97438 * 6 4 3 8 8 H 1.09002 * 110.01371 * 54.92957 * 7 6 4 9 9 C 1.54272 * 110.03053 * 293.54771 * 7 6 4 10 10 C 1.54892 * 104.19171 * 217.10262 * 9 7 6 11 11 C 1.54884 * 102.74948 * 37.94168 * 10 9 7 12 12 H 1.08997 * 110.49346 * 80.86653 * 11 10 9 13 13 N 1.46904 * 110.48422 * 203.38062 * 11 10 9 14 14 C 1.46902 * 111.00069 * 174.59030 * 13 11 10 15 15 C 1.46899 * 110.99886 * 298.53988 * 13 11 10 16 16 C 1.50703 * 109.47180 * 170.00074 * 15 13 11 17 17 H 1.07994 * 119.99603 * 0.02562 * 16 15 13 18 18 C 1.37875 * 119.99838 * 180.02562 * 16 15 13 19 19 N 1.31513 * 120.00380 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99848 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47261 * 239.99776 * 20 18 16 23 23 H 1.48500 * 109.47454 * 119.99769 * 20 18 16 24 24 C 1.53872 * 110.03525 * 176.37552 * 7 6 4 25 25 H 1.09003 * 109.46768 * 60.00275 * 1 2 3 26 26 H 1.09000 * 109.46823 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47327 * 300.00262 * 1 2 3 28 28 H 1.08991 * 109.47159 * 239.99661 * 2 1 3 29 29 H 1.09003 * 109.47136 * 119.99328 * 2 1 3 30 30 H 1.09003 * 109.47305 * 59.98917 * 6 4 3 31 31 H 1.09004 * 109.47064 * 299.99769 * 6 4 3 32 32 H 1.08999 * 110.48926 * 98.42270 * 9 7 6 33 33 H 1.08999 * 110.59539 * 335.83148 * 9 7 6 34 34 H 1.08994 * 110.75790 * 279.62474 * 10 9 7 35 35 H 1.09003 * 110.91400 * 156.32747 * 10 9 7 36 36 H 1.08997 * 109.47274 * 183.95190 * 14 13 11 37 37 H 1.08999 * 109.47167 * 303.95879 * 14 13 11 38 38 H 1.09004 * 109.46902 * 63.95344 * 14 13 11 39 39 H 1.09005 * 109.47198 * 50.00271 * 15 13 11 40 40 H 1.08998 * 109.47329 * 290.00218 * 15 13 11 41 41 H 0.97001 * 119.99667 * 0.02562 * 19 18 16 42 42 H 1.08995 * 110.03446 * 0.02562 * 24 7 6 43 43 H 1.09002 * 110.02999 * 238.56571 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9375 -0.0012 7 6 5.4486 2.8575 -0.0010 8 1 5.7904 2.2499 -0.8390 9 6 5.9459 2.2522 1.3280 10 6 7.2440 3.0374 1.6406 11 6 6.8925 4.4749 1.1833 12 1 6.3101 4.9872 1.9490 13 7 8.1147 5.2303 0.8774 14 6 7.7919 6.5510 0.3210 15 6 8.9683 5.3544 2.0665 16 6 10.3097 5.9123 1.6658 17 1 10.5080 6.1512 0.6315 18 6 11.2837 6.1177 2.6199 19 7 11.0420 5.8273 3.8796 20 14 12.9461 6.8099 2.1234 21 1 12.9643 7.0515 0.6582 22 1 14.0125 5.8390 2.4778 23 1 13.1836 8.0891 2.8394 24 6 6.0504 4.2706 -0.0931 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8901 30 1 3.5849 3.4700 0.8887 31 1 3.5844 3.4693 -0.8912 32 1 6.1619 1.1908 1.2066 33 1 5.2095 2.4030 2.1173 34 1 8.0819 2.6432 1.0656 35 1 7.4650 3.0147 2.7077 36 1 8.7127 7.0612 0.0385 37 1 7.1589 6.4301 -0.5581 38 1 7.2643 7.1417 1.0700 39 1 9.1040 4.3727 2.5204 40 1 8.4959 6.0246 2.7846 41 1 10.1786 5.4682 4.1374 42 1 5.2540 5.0135 -0.1373 43 1 6.6851 4.3494 -0.9757 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173650048.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:15 Heat of formation + Delta-G solvation = -127.550359 kcal Electronic energy + Delta-G solvation = -20866.241823 eV Core-core repulsion = 17716.695666 eV Total energy + Delta-G solvation = -3149.546157 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.63067 -40.03425 -37.86937 -36.82679 -34.75173 -32.89982 -31.87596 -29.94710 -28.20525 -27.71341 -25.67716 -24.02692 -23.45941 -22.18426 -21.12703 -20.22917 -18.92141 -18.66657 -17.78541 -17.57872 -16.89721 -16.27062 -15.78053 -15.61260 -15.43910 -15.05697 -14.76426 -14.38701 -14.12819 -13.84589 -13.67336 -13.45466 -13.25556 -13.07186 -12.80619 -12.78812 -12.50428 -12.48717 -12.29448 -11.96705 -11.91929 -11.80108 -11.79674 -11.59702 -11.54708 -11.43533 -11.28572 -10.73895 -10.56811 -9.08939 -8.68057 -6.38036 1.21386 1.52415 1.62247 1.71302 1.79307 2.55428 3.14089 3.21363 3.53413 3.60113 3.71930 3.93650 3.99979 4.09014 4.26192 4.30604 4.34705 4.40585 4.50974 4.53743 4.59301 4.61389 4.68839 4.78543 4.84406 4.89436 4.91521 4.92514 4.98206 5.03281 5.07954 5.15177 5.16170 5.24953 5.33362 5.43486 5.51995 5.83222 6.01076 6.42110 6.45368 6.68986 6.76642 7.42602 8.70647 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.052027 B = 0.003082 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.054844 B = 9083.904653 C = 9316.894477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 O -0.364 6.364 4 C 0.461 3.539 5 O -0.537 6.537 6 C -0.101 4.101 7 C -0.070 4.070 8 H 0.076 0.924 9 C -0.104 4.104 10 C -0.114 4.114 11 C 0.071 3.929 12 H 0.030 0.970 13 N -0.539 5.539 14 C 0.040 3.960 15 C 0.193 3.807 16 C -0.596 4.596 17 H 0.054 0.946 18 C -0.041 4.041 19 N -0.940 5.940 20 Si 1.126 2.874 21 H -0.270 1.270 22 H -0.280 1.280 23 H -0.278 1.278 24 C -0.098 4.098 25 H 0.070 0.930 26 H 0.097 0.903 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.123 0.877 31 H 0.135 0.865 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.041 0.959 36 H 0.052 0.948 37 H 0.089 0.911 38 H 0.007 0.993 39 H 0.004 0.996 40 H -0.050 1.050 41 H 0.252 0.748 42 H 0.091 0.909 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.708 -7.457 -9.990 25.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.021 4.021 3 O -0.281 6.281 4 C 0.306 3.694 5 O -0.426 6.426 6 C -0.138 4.138 7 C -0.089 4.089 8 H 0.095 0.905 9 C -0.141 4.141 10 C -0.152 4.152 11 C -0.037 4.037 12 H 0.048 0.952 13 N -0.262 5.262 14 C -0.108 4.108 15 C 0.066 3.934 16 C -0.635 4.635 17 H 0.073 0.927 18 C -0.237 4.237 19 N -0.578 5.578 20 Si 0.947 3.053 21 H -0.194 1.194 22 H -0.205 1.205 23 H -0.204 1.204 24 C -0.135 4.135 25 H 0.089 0.911 26 H 0.116 0.884 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.141 0.859 31 H 0.153 0.847 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.107 0.893 38 H 0.025 0.975 39 H 0.022 0.978 40 H -0.032 1.032 41 H 0.062 0.938 42 H 0.109 0.891 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.812 -7.583 -9.780 23.359 hybrid contribution -1.598 -0.383 0.658 1.770 sum -21.410 -7.966 -9.121 24.598 Atomic orbital electron populations 1.21820 0.90487 1.04270 1.03740 1.23243 0.97050 0.79518 1.02324 1.86518 1.24345 1.33426 1.83825 1.24266 0.80434 0.93495 0.71251 1.90667 1.60983 1.44447 1.46511 1.21679 0.94355 0.89814 1.07974 1.21473 0.92776 0.96275 0.98333 0.90517 1.22305 0.95698 0.99075 0.97068 1.22463 0.98401 0.95061 0.99309 1.22604 0.90209 0.93785 0.97144 0.95194 1.62112 1.15717 1.17746 1.30672 1.22224 1.00414 0.89372 0.98762 1.19542 0.92552 0.93672 0.87587 1.22361 0.99410 1.45330 0.96356 0.92733 1.27441 1.07712 0.95530 0.93063 1.70871 1.25275 1.43288 1.18379 0.82817 0.70518 0.76245 0.75672 1.19436 1.20535 1.20370 1.22166 0.98482 0.96143 0.96730 0.91089 0.88430 0.91351 0.91443 0.91780 0.85920 0.84670 0.91832 0.91328 0.92561 0.94008 0.92899 0.89264 0.97477 0.97827 1.03221 0.93831 0.89063 0.90641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.29 71.98 0.74 -0.63 16 2 C 0.05 0.81 6.19 71.98 0.45 1.25 16 3 O -0.36 -6.92 10.22 -51.40 -0.53 -7.44 16 4 C 0.46 9.88 7.73 71.24 0.55 10.43 16 5 O -0.54 -15.01 14.50 21.99 0.32 -14.69 16 6 C -0.10 -1.69 4.94 29.85 0.15 -1.54 16 7 C -0.07 -1.61 2.56 -10.07 -0.03 -1.63 16 8 H 0.08 1.89 7.97 -2.39 -0.02 1.88 16 9 C -0.10 -2.90 5.36 31.67 0.17 -2.73 16 10 C -0.11 -4.10 5.30 31.88 0.17 -3.93 16 11 C 0.07 2.51 2.58 45.99 0.12 2.63 16 12 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 13 N -0.54 -23.65 4.58 -895.27 -4.10 -27.75 16 14 C 0.04 1.55 9.14 127.69 1.17 2.72 16 15 C 0.19 10.53 3.90 85.56 0.33 10.87 16 16 C -0.60 -34.99 8.52 25.60 0.22 -34.77 16 17 H 0.05 3.17 7.10 -2.91 -0.02 3.15 16 18 C -0.04 -2.41 5.46 84.65 0.46 -1.95 16 19 N -0.94 -59.55 13.65 21.45 0.29 -59.26 16 20 Si 1.13 51.66 29.90 68.60 2.05 53.72 16 21 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 24 C -0.10 -2.46 4.87 31.32 0.15 -2.31 16 25 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 28 H 0.07 1.05 8.13 -2.39 -0.02 1.04 16 29 H 0.06 1.05 8.13 -2.39 -0.02 1.03 16 30 H 0.12 1.70 8.04 -2.39 -0.02 1.69 16 31 H 0.14 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.06 1.90 7.60 -2.39 -0.02 1.88 16 33 H 0.07 1.76 7.79 -2.39 -0.02 1.74 16 34 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.04 1.62 7.71 -2.39 -0.02 1.60 16 36 H 0.05 2.23 6.86 -2.39 -0.02 2.21 16 37 H 0.09 2.67 6.78 -2.39 -0.02 2.65 16 38 H 0.01 0.26 8.14 -2.38 -0.02 0.24 16 39 H 0.00 0.22 6.47 -2.38 -0.02 0.20 16 40 H -0.05 -2.92 7.99 -2.39 -0.02 -2.94 16 41 H 0.25 16.27 7.22 -92.71 -0.67 15.60 16 42 H 0.09 1.77 7.67 -2.39 -0.02 1.75 16 43 H 0.07 2.02 7.67 -2.39 -0.02 2.00 16 Total: -1.00 -72.50 341.14 3.75 -68.76 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: 1.06 Total: 8.26 kcal Atomic # 6 Polarization: -26.24 SS G_CDS: 4.65 Total: -21.59 kcal Atomic # 7 Polarization: -83.20 SS G_CDS: -3.81 Total: -87.01 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.21 Total: -22.13 kcal Atomic # 14 Polarization: 51.66 SS G_CDS: 2.05 Total: 53.72 kcal Total: -72.50 3.75 -68.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173650048.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.793 kcal (2) G-P(sol) polarization free energy of solvation -72.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds