Wall clock time and date at job start Mon Mar 30 2020 01:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45206 * 109.47226 * 2 1 4 4 C 1.34224 * 117.00068 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00202 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99813 * 180.02562 * 4 3 2 7 7 C 1.53003 * 109.46879 * 180.02562 * 6 4 3 8 8 H 1.09000 * 110.43544 * 307.54140 * 7 6 4 9 9 C 1.54260 * 110.48652 * 70.22760 * 7 6 4 10 10 C 1.53877 * 106.60158 * 142.28629 * 9 7 6 11 11 C 1.54270 * 106.59735 * 0.02562 * 10 9 7 12 12 H 1.09001 * 110.60381 * 95.12103 * 11 10 9 13 13 N 1.46896 * 110.48313 * 217.71521 * 11 10 9 14 14 C 1.46908 * 110.99658 * 269.76672 * 13 11 10 15 15 H 1.08998 * 109.47291 * 325.00273 * 14 13 11 16 16 C 1.52997 * 109.46669 * 85.00175 * 14 13 11 17 17 C 1.50700 * 109.47031 * 204.99879 * 14 13 11 18 18 H 1.08000 * 120.00116 * 0.02562 * 17 14 13 19 19 C 1.37881 * 119.99736 * 180.02562 * 17 14 13 20 20 N 1.31515 * 119.99836 * 0.02562 * 19 17 14 21 21 Si 1.86801 * 119.99967 * 180.02562 * 19 17 14 22 22 H 1.48503 * 109.46918 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47060 * 120.00076 * 21 19 17 24 24 H 1.48504 * 109.46775 * 240.00082 * 21 19 17 25 25 C 1.54891 * 110.48466 * 185.00155 * 7 6 4 26 26 H 1.09002 * 109.47153 * 299.99431 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99603 * 1 2 3 29 29 H 1.08996 * 109.47853 * 120.00540 * 2 1 3 30 30 H 1.09002 * 109.47153 * 240.00569 * 2 1 3 31 31 H 1.08999 * 109.47198 * 300.00122 * 6 4 3 32 32 H 1.09004 * 109.47022 * 60.00479 * 6 4 3 33 33 H 1.09000 * 110.03082 * 261.56816 * 9 7 6 34 34 H 1.08999 * 110.03759 * 22.99704 * 9 7 6 35 35 H 1.08996 * 110.03384 * 240.71373 * 10 9 7 36 36 H 1.09005 * 110.03109 * 119.28147 * 10 9 7 37 37 H 1.00903 * 111.00255 * 145.82442 * 13 11 10 38 38 H 1.09003 * 109.47129 * 60.00504 * 16 14 13 39 39 H 1.09004 * 109.46924 * 179.97438 * 16 14 13 40 40 H 1.09003 * 109.47646 * 300.00211 * 16 14 13 41 41 H 0.97005 * 119.99806 * 179.97438 * 20 19 17 42 42 H 1.09000 * 110.75331 * 321.69466 * 25 7 6 43 43 H 1.08999 * 110.75940 * 84.88098 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9375 0.0012 7 6 5.4486 2.8574 0.0010 8 1 5.7961 2.2156 0.8106 9 6 5.9621 2.3416 -1.3591 10 6 7.2514 3.1230 -1.6673 11 6 7.4767 4.0859 -0.4833 12 1 8.1543 3.6438 0.2472 13 7 8.0040 5.3716 -0.9596 14 6 9.4728 5.3616 -0.9841 15 1 9.8462 4.7686 -0.1493 16 6 9.9566 4.7502 -2.3006 17 6 9.9869 6.7734 -0.8671 18 1 9.2920 7.5958 -0.7825 19 6 11.3443 7.0150 -0.8681 20 7 12.1904 6.0136 -0.9716 21 14 11.9815 8.7649 -0.7222 22 1 10.8345 9.7025 -0.6200 23 1 12.8284 8.8838 0.4917 24 1 12.7883 9.0996 -1.9233 25 6 6.0656 4.2724 0.1282 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 3.5850 3.4699 -0.8888 32 1 3.5844 3.4693 0.8913 33 1 6.1779 1.2750 -1.2966 34 1 5.2185 2.5277 -2.1340 35 1 7.1334 3.6883 -2.5917 36 1 8.0928 2.4355 -1.7543 37 1 7.6571 6.1350 -0.3983 38 1 9.5833 5.3433 -3.1355 39 1 11.0464 4.7431 -2.3191 40 1 9.5847 3.7291 -2.3854 41 1 13.1454 6.1836 -0.9727 42 1 5.4886 4.9982 -0.4449 43 1 6.1315 4.5726 1.1739 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173650997.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:19 Heat of formation + Delta-G solvation = -111.364891 kcal Electronic energy + Delta-G solvation = -20708.352406 eV Core-core repulsion = 17559.508104 eV Total energy + Delta-G solvation = -3148.844302 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.67741 -38.41766 -36.74448 -35.01334 -32.58402 -32.01888 -30.57506 -28.91098 -26.99290 -25.55614 -24.64260 -23.32292 -21.32214 -20.05324 -19.97624 -19.04789 -17.75702 -16.93117 -16.53579 -16.27673 -15.54665 -14.78045 -14.53778 -14.51206 -13.68015 -13.56522 -13.21817 -13.16002 -13.05402 -12.57537 -12.39057 -12.03075 -11.87423 -11.64865 -11.35723 -10.98949 -10.91262 -10.89259 -10.78275 -10.67528 -10.55208 -10.53616 -10.41460 -10.20058 -10.02002 -9.89994 -9.66486 -8.74261 -8.43734 -7.24149 -5.99733 -4.06133 2.11476 2.49854 3.29800 3.37617 3.41638 4.41757 4.47428 4.59972 4.65748 4.71362 4.78285 4.94404 4.99608 5.26124 5.31160 5.36692 5.40890 5.43320 5.52572 5.59391 5.63762 5.79735 5.93319 5.97883 6.06374 6.14673 6.26774 6.38977 6.45733 6.59595 6.69209 6.83549 6.99476 7.23283 7.31305 7.58622 7.64910 7.81983 7.95618 8.32675 8.45800 8.73716 9.05898 9.59765 11.06381 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.057845 B = 0.002943 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.935122 B = 9510.412247 C = 9781.659552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.363 6.363 4 C 0.460 3.540 5 O -0.503 6.503 6 C -0.105 4.105 7 C -0.080 4.080 8 H 0.081 0.919 9 C -0.115 4.115 10 C -0.111 4.111 11 C 0.085 3.915 12 H 0.042 0.958 13 N -0.682 5.682 14 C 0.211 3.789 15 H 0.000 1.000 16 C -0.126 4.126 17 C -0.517 4.517 18 H 0.059 0.941 19 C 0.060 3.940 20 N -0.890 5.890 21 Si 0.896 3.104 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.284 1.284 25 C -0.120 4.120 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.056 0.944 37 H 0.330 0.670 38 H 0.029 0.971 39 H 0.077 0.923 40 H 0.009 0.991 41 H 0.260 0.740 42 H 0.076 0.924 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.525 -9.436 2.359 22.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.281 6.281 4 C 0.303 3.697 5 O -0.390 6.390 6 C -0.143 4.143 7 C -0.099 4.099 8 H 0.100 0.900 9 C -0.152 4.152 10 C -0.149 4.149 11 C -0.025 4.025 12 H 0.060 0.940 13 N -0.313 5.313 14 C 0.104 3.896 15 H 0.018 0.982 16 C -0.184 4.184 17 C -0.556 4.556 18 H 0.078 0.922 19 C -0.141 4.141 20 N -0.529 5.529 21 Si 0.724 3.276 22 H -0.198 1.198 23 H -0.212 1.212 24 H -0.210 1.210 25 C -0.158 4.158 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.148 0.852 38 H 0.048 0.952 39 H 0.096 0.904 40 H 0.028 0.972 41 H 0.070 0.930 42 H 0.095 0.905 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.173 -9.954 1.680 22.558 hybrid contribution 0.687 0.724 0.988 1.405 sum -19.486 -9.230 2.668 21.726 Atomic orbital electron populations 1.21806 0.92721 1.02905 1.03516 1.22994 0.95286 0.80482 1.02565 1.86519 1.25082 1.32213 1.84279 1.23981 0.80225 0.93293 0.72208 1.90671 1.60254 1.43260 1.44825 1.21574 0.96685 0.90279 1.05747 1.21807 0.90668 0.97851 0.99570 0.90014 1.22200 0.97666 1.00049 0.95334 1.22227 0.95823 0.97173 0.99713 1.22328 0.93431 0.92412 0.94357 0.94030 1.60813 1.12114 1.01980 1.56401 1.19164 0.80986 0.95854 0.93635 0.98247 1.21758 1.02843 0.95693 0.98117 1.21329 0.91705 0.92451 1.50068 0.92237 1.24935 0.96945 0.97102 0.95160 1.69918 1.02203 1.30291 1.50461 0.86482 0.78833 0.84773 0.77537 1.19776 1.21154 1.21020 1.22745 0.97021 0.95501 1.00563 0.91501 0.90322 0.91462 0.91334 0.91281 0.87500 0.87769 0.91738 0.92589 0.90755 0.92556 0.85191 0.95194 0.90393 0.97177 0.93043 0.90493 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.29 37.16 0.38 -0.49 16 2 C 0.06 0.51 6.19 37.16 0.23 0.74 16 3 O -0.36 -3.83 10.22 -39.24 -0.40 -4.23 16 4 C 0.46 5.41 7.77 36.01 0.28 5.69 16 5 O -0.50 -7.32 14.76 -18.75 -0.28 -7.59 16 6 C -0.11 -1.06 5.21 -27.88 -0.15 -1.20 16 7 C -0.08 -1.01 2.45 -88.96 -0.22 -1.22 16 8 H 0.08 1.10 7.90 -51.93 -0.41 0.69 16 9 C -0.11 -1.61 5.57 -25.62 -0.14 -1.75 16 10 C -0.11 -1.87 5.16 -25.61 -0.13 -2.00 16 11 C 0.09 1.53 3.18 -66.04 -0.21 1.32 16 12 H 0.04 0.82 7.44 -51.93 -0.39 0.44 16 13 N -0.68 -14.43 6.14 -99.20 -0.61 -15.04 16 14 C 0.21 5.39 2.60 -68.86 -0.18 5.21 16 15 H 0.00 0.00 7.43 -51.93 -0.39 -0.39 16 16 C -0.13 -3.18 9.01 37.16 0.33 -2.84 16 17 C -0.52 -14.25 8.59 -34.44 -0.30 -14.55 16 18 H 0.06 1.61 7.62 -52.49 -0.40 1.21 16 19 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 20 N -0.89 -25.74 11.32 55.43 0.63 -25.11 16 21 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 C -0.12 -1.65 5.69 -24.72 -0.14 -1.79 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 30 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 31 H 0.11 0.94 7.95 -51.93 -0.41 0.53 16 32 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.95 7.77 -51.93 -0.40 0.55 16 34 H 0.06 0.73 7.71 -51.93 -0.40 0.33 16 35 H 0.07 1.33 8.04 -51.93 -0.42 0.91 16 36 H 0.06 0.99 7.41 -51.93 -0.38 0.61 16 37 H 0.33 6.77 7.91 -39.29 -0.31 6.46 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 40 H 0.01 0.22 6.13 -51.93 -0.32 -0.10 16 41 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.08 1.01 8.06 -51.93 -0.42 0.59 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 341.17 15.07 5.14 5.14 Total: -1.00 -30.46 341.17 -8.35 -38.81 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -7.48 Total: 2.95 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -0.33 Total: -11.30 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.02 Total: -40.15 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: -0.68 Total: -11.83 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.46 -8.35 -38.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173650997.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.550 kcal (2) G-P(sol) polarization free energy of solvation -30.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds