Wall clock time and date at job start Mon Mar 30 2020 01:32:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 O 1.45206 * 109.47226 * 2 1
4 4 C 1.34224 * 117.00068 * 179.97438 * 3 2 1
5 5 O 1.20827 * 120.00202 * 0.02562 * 4 3 2
6 6 C 1.50704 * 119.99813 * 180.02562 * 4 3 2
7 7 C 1.53003 * 109.46879 * 180.02562 * 6 4 3
8 8 H 1.09000 * 110.43544 * 307.54140 * 7 6 4
9 9 C 1.54260 * 110.48652 * 70.22760 * 7 6 4
10 10 C 1.53877 * 106.60158 * 142.28629 * 9 7 6
11 11 C 1.54270 * 106.59735 * 0.02562 * 10 9 7
12 12 H 1.09001 * 110.60381 * 95.12103 * 11 10 9
13 13 N 1.46896 * 110.48313 * 217.71521 * 11 10 9
14 14 C 1.46908 * 110.99658 * 269.76672 * 13 11 10
15 15 H 1.08998 * 109.47291 * 325.00273 * 14 13 11
16 16 C 1.52997 * 109.46669 * 85.00175 * 14 13 11
17 17 C 1.50700 * 109.47031 * 204.99879 * 14 13 11
18 18 H 1.08000 * 120.00116 * 0.02562 * 17 14 13
19 19 C 1.37881 * 119.99736 * 180.02562 * 17 14 13
20 20 N 1.31515 * 119.99836 * 0.02562 * 19 17 14
21 21 Si 1.86801 * 119.99967 * 180.02562 * 19 17 14
22 22 H 1.48503 * 109.46918 * 359.97438 * 21 19 17
23 23 H 1.48494 * 109.47060 * 120.00076 * 21 19 17
24 24 H 1.48504 * 109.46775 * 240.00082 * 21 19 17
25 25 C 1.54891 * 110.48466 * 185.00155 * 7 6 4
26 26 H 1.09002 * 109.47153 * 299.99431 * 1 2 3
27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3
28 28 H 1.09004 * 109.47261 * 59.99603 * 1 2 3
29 29 H 1.08996 * 109.47853 * 120.00540 * 2 1 3
30 30 H 1.09002 * 109.47153 * 240.00569 * 2 1 3
31 31 H 1.08999 * 109.47198 * 300.00122 * 6 4 3
32 32 H 1.09004 * 109.47022 * 60.00479 * 6 4 3
33 33 H 1.09000 * 110.03082 * 261.56816 * 9 7 6
34 34 H 1.08999 * 110.03759 * 22.99704 * 9 7 6
35 35 H 1.08996 * 110.03384 * 240.71373 * 10 9 7
36 36 H 1.09005 * 110.03109 * 119.28147 * 10 9 7
37 37 H 1.00903 * 111.00255 * 145.82442 * 13 11 10
38 38 H 1.09003 * 109.47129 * 60.00504 * 16 14 13
39 39 H 1.09004 * 109.46924 * 179.97438 * 16 14 13
40 40 H 1.09003 * 109.47646 * 300.00211 * 16 14 13
41 41 H 0.97005 * 119.99806 * 179.97438 * 20 19 17
42 42 H 1.09000 * 110.75331 * 321.69466 * 25 7 6
43 43 H 1.08999 * 110.75940 * 84.88098 * 25 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0140 1.3690 0.0000
4 6 3.3447 1.5449 0.0005
5 8 4.0807 0.5867 0.0005
6 6 3.9207 2.9375 0.0012
7 6 5.4486 2.8574 0.0010
8 1 5.7961 2.2156 0.8106
9 6 5.9621 2.3416 -1.3591
10 6 7.2514 3.1230 -1.6673
11 6 7.4767 4.0859 -0.4833
12 1 8.1543 3.6438 0.2472
13 7 8.0040 5.3716 -0.9596
14 6 9.4728 5.3616 -0.9841
15 1 9.8462 4.7686 -0.1493
16 6 9.9566 4.7502 -2.3006
17 6 9.9869 6.7734 -0.8671
18 1 9.2920 7.5958 -0.7825
19 6 11.3443 7.0150 -0.8681
20 7 12.1904 6.0136 -0.9716
21 14 11.9815 8.7649 -0.7222
22 1 10.8345 9.7025 -0.6200
23 1 12.8284 8.8838 0.4917
24 1 12.7883 9.0996 -1.9233
25 6 6.0656 4.2724 0.1282
26 1 -0.3633 0.5137 0.8900
27 1 -0.3633 -1.0277 -0.0005
28 1 -0.3634 0.5139 -0.8900
29 1 1.8934 -0.5139 0.8899
30 1 1.8933 -0.5137 -0.8900
31 1 3.5850 3.4699 -0.8888
32 1 3.5844 3.4693 0.8913
33 1 6.1779 1.2750 -1.2966
34 1 5.2185 2.5277 -2.1340
35 1 7.1334 3.6883 -2.5917
36 1 8.0928 2.4355 -1.7543
37 1 7.6571 6.1350 -0.3983
38 1 9.5833 5.3433 -3.1355
39 1 11.0464 4.7431 -2.3191
40 1 9.5847 3.7291 -2.3854
41 1 13.1454 6.1836 -0.9727
42 1 5.4886 4.9982 -0.4449
43 1 6.1315 4.5726 1.1739
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001173650997.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:32:19
Heat of formation + Delta-G solvation = -129.287724 kcal
Electronic energy + Delta-G solvation = -20709.129599 eV
Core-core repulsion = 17559.508104 eV
Total energy + Delta-G solvation = -3149.621495 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 269.178 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-41.57342 -39.67941 -37.73638 -36.69987 -34.30470 -32.82687 -31.79941 -30.51498
-28.34184 -27.42367 -26.18269 -24.02059 -22.21943 -21.98380 -21.22496 -20.33211
-18.69510 -18.40431 -17.77862 -17.31468 -16.82954 -16.59026 -16.01168 -15.42677
-15.35714 -14.74302 -14.49351 -14.26243 -14.13249 -13.67411 -13.36328 -13.27828
-13.13163 -12.80976 -12.80452 -12.67672 -12.47660 -12.38013 -12.23542 -12.06126
-11.99149 -11.70080 -11.64783 -11.55522 -11.49073 -11.39467 -11.14868 -10.79386
-10.55494 -9.04113 -8.12229 -6.26823 1.23714 1.41755 1.43319 1.55435
1.73533 2.42089 3.15943 3.53739 3.60171 3.65858 3.91697 4.01739
4.09818 4.10888 4.29682 4.36283 4.40349 4.58375 4.61039 4.68817
4.79451 4.85166 4.88480 4.93076 4.93966 4.98604 5.05130 5.13478
5.17394 5.21175 5.28436 5.31116 5.39399 5.49014 5.54389 5.56485
5.72151 5.89591 6.24306 6.52822 6.78890 6.83382 7.06605 7.44002
8.93545
Molecular weight = 269.18amu
Principal moments of inertia in cm(-1)
A = 0.057845 B = 0.002943 C = 0.002862
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 483.935122 B = 9510.412247 C = 9781.659552
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C 0.052 3.948
3 O -0.363 6.363
4 C 0.461 3.539
5 O -0.539 6.539
6 C -0.099 4.099
7 C -0.072 4.072
8 H 0.070 0.930
9 C -0.106 4.106
10 C -0.108 4.108
11 C 0.077 3.923
12 H 0.016 0.984
13 N -0.676 5.676
14 C 0.216 3.784
15 H -0.037 1.037
16 C -0.113 4.113
17 C -0.535 4.535
18 H 0.062 0.938
19 C 0.008 3.992
20 N -0.921 5.921
21 Si 0.965 3.035
22 H -0.263 1.263
23 H -0.281 1.281
24 H -0.282 1.282
25 C -0.106 4.106
26 H 0.069 0.931
27 H 0.097 0.903
28 H 0.069 0.931
29 H 0.066 0.934
30 H 0.065 0.935
31 H 0.128 0.872
32 H 0.132 0.868
33 H 0.054 0.946
34 H 0.072 0.928
35 H 0.065 0.935
36 H 0.037 0.963
37 H 0.335 0.665
38 H 0.026 0.974
39 H 0.051 0.949
40 H 0.024 0.976
41 H 0.261 0.739
42 H 0.093 0.907
43 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.849 -8.382 2.582 24.475
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.021 4.021
3 O -0.281 6.281
4 C 0.306 3.694
5 O -0.428 6.428
6 C -0.136 4.136
7 C -0.091 4.091
8 H 0.089 0.911
9 C -0.144 4.144
10 C -0.146 4.146
11 C -0.034 4.034
12 H 0.034 0.966
13 N -0.307 5.307
14 C 0.108 3.892
15 H -0.020 1.020
16 C -0.172 4.172
17 C -0.573 4.573
18 H 0.081 0.919
19 C -0.191 4.191
20 N -0.560 5.560
21 Si 0.790 3.210
22 H -0.187 1.187
23 H -0.207 1.207
24 H -0.207 1.207
25 C -0.144 4.144
26 H 0.088 0.912
27 H 0.116 0.884
28 H 0.088 0.912
29 H 0.084 0.916
30 H 0.083 0.917
31 H 0.146 0.854
32 H 0.150 0.850
33 H 0.073 0.927
34 H 0.091 0.909
35 H 0.084 0.916
36 H 0.056 0.944
37 H 0.153 0.847
38 H 0.046 0.954
39 H 0.070 0.930
40 H 0.043 0.957
41 H 0.070 0.930
42 H 0.111 0.889
43 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -22.537 -8.899 1.906 24.305
hybrid contribution 1.391 0.311 0.918 1.695
sum -21.146 -8.588 2.823 22.997
Atomic orbital electron populations
1.21818 0.90467 1.04259 1.03762 1.23241 0.97062 0.79545 1.02296
1.86518 1.24334 1.33392 1.83814 1.24297 0.80417 0.93525 0.71173
1.90668 1.61036 1.44494 1.46627 1.21561 0.94217 0.89708 1.08106
1.21671 0.92801 0.96577 0.98093 0.91122 1.22117 0.96474 0.98930
0.96891 1.22151 0.96856 0.96760 0.98842 1.22439 0.95483 0.90881
0.94585 0.96554 1.60725 1.09325 1.03733 1.56911 1.18947 0.83556
0.94551 0.92167 1.01967 1.21579 1.01070 0.96570 0.97965 1.21661
0.92194 0.93308 1.50128 0.91943 1.25803 0.97243 1.01266 0.94747
1.70057 1.02476 1.32443 1.51055 0.85400 0.78303 0.79795 0.77463
1.18729 1.20741 1.20742 1.22643 0.93985 0.96606 1.01143 0.91165
0.88447 0.91238 0.91599 0.91685 0.85417 0.84995 0.92740 0.90931
0.91598 0.94411 0.84692 0.95444 0.92969 0.95708 0.92952 0.88874
0.90632
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.36 10.29 71.98 0.74 -0.62 16
2 C 0.05 0.81 6.19 71.98 0.45 1.25 16
3 O -0.36 -6.91 10.22 -51.36 -0.52 -7.44 16
4 C 0.46 9.95 7.77 71.24 0.55 10.50 16
5 O -0.54 -15.23 14.76 21.96 0.32 -14.90 16
6 C -0.10 -1.66 5.21 29.85 0.16 -1.51 16
7 C -0.07 -1.68 2.45 -9.72 -0.02 -1.71 16
8 H 0.07 1.83 7.90 -2.39 -0.02 1.81 16
9 C -0.11 -2.86 5.57 31.32 0.17 -2.69 16
10 C -0.11 -3.62 5.16 31.32 0.16 -3.46 16
11 C 0.08 2.74 3.18 46.00 0.15 2.88 16
12 H 0.02 0.67 7.44 -2.39 -0.02 0.66 16
13 N -0.68 -28.58 6.14 -467.76 -2.87 -31.45 16
14 C 0.22 11.31 2.60 44.17 0.11 11.43 16
15 H -0.04 -2.18 7.43 -2.39 -0.02 -2.20 16
16 C -0.11 -5.88 9.01 71.98 0.65 -5.23 16
17 C -0.53 -29.68 8.59 25.60 0.22 -29.46 16
18 H 0.06 3.36 7.62 -2.91 -0.02 3.33 16
19 C 0.01 0.46 5.30 84.66 0.45 0.91 16
20 N -0.92 -54.29 11.32 21.45 0.24 -54.05 16
21 Si 0.97 43.84 29.54 68.60 2.03 45.86 16
22 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16
23 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16
24 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16
25 C -0.11 -2.68 5.69 31.90 0.18 -2.50 16
26 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16
27 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16
28 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16
29 H 0.07 1.05 8.13 -2.39 -0.02 1.03 16
30 H 0.06 1.05 8.13 -2.39 -0.02 1.03 16
31 H 0.13 1.70 7.95 -2.39 -0.02 1.68 16
32 H 0.13 1.57 8.14 -2.38 -0.02 1.55 16
33 H 0.05 1.59 7.77 -2.39 -0.02 1.57 16
34 H 0.07 1.73 7.71 -2.39 -0.02 1.71 16
35 H 0.07 2.32 8.04 -2.39 -0.02 2.30 16
36 H 0.04 1.37 7.41 -2.38 -0.02 1.35 16
37 H 0.34 13.48 7.91 -89.69 -0.71 12.77 16
38 H 0.03 1.37 8.14 -2.39 -0.02 1.36 16
39 H 0.05 2.96 6.07 -2.38 -0.01 2.95 16
40 H 0.02 1.15 6.13 -2.39 -0.01 1.14 16
41 H 0.26 14.58 8.31 -92.70 -0.77 13.81 16
42 H 0.09 2.11 8.06 -2.39 -0.02 2.09 16
43 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16
Total: -1.00 -66.67 341.17 3.43 -63.23
By element:
Atomic # 1 Polarization: 18.67 SS G_CDS: 0.27 Total: 18.94 kcal
Atomic # 6 Polarization: -24.16 SS G_CDS: 3.97 Total: -20.19 kcal
Atomic # 7 Polarization: -82.87 SS G_CDS: -2.63 Total: -85.50 kcal
Atomic # 8 Polarization: -22.14 SS G_CDS: -0.20 Total: -22.34 kcal
Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal
Total: -66.67 3.43 -63.23 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001173650997.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -66.055 kcal
(2) G-P(sol) polarization free energy of solvation -66.665 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.721 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.433 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.232 kcal
(6) G-S(sol) free energy of system = (1) + (5) -129.288 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds