Wall clock time and date at job start Mon Mar 30 2020 01:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45206 * 109.47226 * 2 1 4 4 C 1.34224 * 117.00068 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00202 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99813 * 180.02562 * 4 3 2 7 7 C 1.53003 * 109.46879 * 180.02562 * 6 4 3 8 8 H 1.09000 * 110.43544 * 307.54140 * 7 6 4 9 9 C 1.54260 * 110.48652 * 70.22760 * 7 6 4 10 10 C 1.53877 * 106.60158 * 142.28629 * 9 7 6 11 11 C 1.54270 * 106.59735 * 0.02562 * 10 9 7 12 12 H 1.09001 * 110.60381 * 95.12103 * 11 10 9 13 13 N 1.46896 * 110.48313 * 217.71521 * 11 10 9 14 14 C 1.46908 * 110.99658 * 269.76672 * 13 11 10 15 15 H 1.08998 * 109.47291 * 325.00273 * 14 13 11 16 16 C 1.52997 * 109.46669 * 85.00175 * 14 13 11 17 17 C 1.50700 * 109.47031 * 204.99879 * 14 13 11 18 18 H 1.08000 * 120.00116 * 0.02562 * 17 14 13 19 19 C 1.37881 * 119.99736 * 180.02562 * 17 14 13 20 20 N 1.31515 * 119.99836 * 0.02562 * 19 17 14 21 21 Si 1.86801 * 119.99967 * 180.02562 * 19 17 14 22 22 H 1.48503 * 109.46918 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47060 * 120.00076 * 21 19 17 24 24 H 1.48504 * 109.46775 * 240.00082 * 21 19 17 25 25 C 1.54891 * 110.48466 * 185.00155 * 7 6 4 26 26 H 1.09002 * 109.47153 * 299.99431 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99603 * 1 2 3 29 29 H 1.08996 * 109.47853 * 120.00540 * 2 1 3 30 30 H 1.09002 * 109.47153 * 240.00569 * 2 1 3 31 31 H 1.08999 * 109.47198 * 300.00122 * 6 4 3 32 32 H 1.09004 * 109.47022 * 60.00479 * 6 4 3 33 33 H 1.09000 * 110.03082 * 261.56816 * 9 7 6 34 34 H 1.08999 * 110.03759 * 22.99704 * 9 7 6 35 35 H 1.08996 * 110.03384 * 240.71373 * 10 9 7 36 36 H 1.09005 * 110.03109 * 119.28147 * 10 9 7 37 37 H 1.00903 * 111.00255 * 145.82442 * 13 11 10 38 38 H 1.09003 * 109.47129 * 60.00504 * 16 14 13 39 39 H 1.09004 * 109.46924 * 179.97438 * 16 14 13 40 40 H 1.09003 * 109.47646 * 300.00211 * 16 14 13 41 41 H 0.97005 * 119.99806 * 179.97438 * 20 19 17 42 42 H 1.09000 * 110.75331 * 321.69466 * 25 7 6 43 43 H 1.08999 * 110.75940 * 84.88098 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9375 0.0012 7 6 5.4486 2.8574 0.0010 8 1 5.7961 2.2156 0.8106 9 6 5.9621 2.3416 -1.3591 10 6 7.2514 3.1230 -1.6673 11 6 7.4767 4.0859 -0.4833 12 1 8.1543 3.6438 0.2472 13 7 8.0040 5.3716 -0.9596 14 6 9.4728 5.3616 -0.9841 15 1 9.8462 4.7686 -0.1493 16 6 9.9566 4.7502 -2.3006 17 6 9.9869 6.7734 -0.8671 18 1 9.2920 7.5958 -0.7825 19 6 11.3443 7.0150 -0.8681 20 7 12.1904 6.0136 -0.9716 21 14 11.9815 8.7649 -0.7222 22 1 10.8345 9.7025 -0.6200 23 1 12.8284 8.8838 0.4917 24 1 12.7883 9.0996 -1.9233 25 6 6.0656 4.2724 0.1282 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 3.5850 3.4699 -0.8888 32 1 3.5844 3.4693 0.8913 33 1 6.1779 1.2750 -1.2966 34 1 5.2185 2.5277 -2.1340 35 1 7.1334 3.6883 -2.5917 36 1 8.0928 2.4355 -1.7543 37 1 7.6571 6.1350 -0.3983 38 1 9.5833 5.3433 -3.1355 39 1 11.0464 4.7431 -2.3191 40 1 9.5847 3.7291 -2.3854 41 1 13.1454 6.1836 -0.9727 42 1 5.4886 4.9982 -0.4449 43 1 6.1315 4.5726 1.1739 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173650997.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:19 Heat of formation + Delta-G solvation = -129.287724 kcal Electronic energy + Delta-G solvation = -20709.129599 eV Core-core repulsion = 17559.508104 eV Total energy + Delta-G solvation = -3149.621495 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.57342 -39.67941 -37.73638 -36.69987 -34.30470 -32.82687 -31.79941 -30.51498 -28.34184 -27.42367 -26.18269 -24.02059 -22.21943 -21.98380 -21.22496 -20.33211 -18.69510 -18.40431 -17.77862 -17.31468 -16.82954 -16.59026 -16.01168 -15.42677 -15.35714 -14.74302 -14.49351 -14.26243 -14.13249 -13.67411 -13.36328 -13.27828 -13.13163 -12.80976 -12.80452 -12.67672 -12.47660 -12.38013 -12.23542 -12.06126 -11.99149 -11.70080 -11.64783 -11.55522 -11.49073 -11.39467 -11.14868 -10.79386 -10.55494 -9.04113 -8.12229 -6.26823 1.23714 1.41755 1.43319 1.55435 1.73533 2.42089 3.15943 3.53739 3.60171 3.65858 3.91697 4.01739 4.09818 4.10888 4.29682 4.36283 4.40349 4.58375 4.61039 4.68817 4.79451 4.85166 4.88480 4.93076 4.93966 4.98604 5.05130 5.13478 5.17394 5.21175 5.28436 5.31116 5.39399 5.49014 5.54389 5.56485 5.72151 5.89591 6.24306 6.52822 6.78890 6.83382 7.06605 7.44002 8.93545 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.057845 B = 0.002943 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.935122 B = 9510.412247 C = 9781.659552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 O -0.363 6.363 4 C 0.461 3.539 5 O -0.539 6.539 6 C -0.099 4.099 7 C -0.072 4.072 8 H 0.070 0.930 9 C -0.106 4.106 10 C -0.108 4.108 11 C 0.077 3.923 12 H 0.016 0.984 13 N -0.676 5.676 14 C 0.216 3.784 15 H -0.037 1.037 16 C -0.113 4.113 17 C -0.535 4.535 18 H 0.062 0.938 19 C 0.008 3.992 20 N -0.921 5.921 21 Si 0.965 3.035 22 H -0.263 1.263 23 H -0.281 1.281 24 H -0.282 1.282 25 C -0.106 4.106 26 H 0.069 0.931 27 H 0.097 0.903 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.128 0.872 32 H 0.132 0.868 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.037 0.963 37 H 0.335 0.665 38 H 0.026 0.974 39 H 0.051 0.949 40 H 0.024 0.976 41 H 0.261 0.739 42 H 0.093 0.907 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.849 -8.382 2.582 24.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.021 4.021 3 O -0.281 6.281 4 C 0.306 3.694 5 O -0.428 6.428 6 C -0.136 4.136 7 C -0.091 4.091 8 H 0.089 0.911 9 C -0.144 4.144 10 C -0.146 4.146 11 C -0.034 4.034 12 H 0.034 0.966 13 N -0.307 5.307 14 C 0.108 3.892 15 H -0.020 1.020 16 C -0.172 4.172 17 C -0.573 4.573 18 H 0.081 0.919 19 C -0.191 4.191 20 N -0.560 5.560 21 Si 0.790 3.210 22 H -0.187 1.187 23 H -0.207 1.207 24 H -0.207 1.207 25 C -0.144 4.144 26 H 0.088 0.912 27 H 0.116 0.884 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.146 0.854 32 H 0.150 0.850 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.056 0.944 37 H 0.153 0.847 38 H 0.046 0.954 39 H 0.070 0.930 40 H 0.043 0.957 41 H 0.070 0.930 42 H 0.111 0.889 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -22.537 -8.899 1.906 24.305 hybrid contribution 1.391 0.311 0.918 1.695 sum -21.146 -8.588 2.823 22.997 Atomic orbital electron populations 1.21818 0.90467 1.04259 1.03762 1.23241 0.97062 0.79545 1.02296 1.86518 1.24334 1.33392 1.83814 1.24297 0.80417 0.93525 0.71173 1.90668 1.61036 1.44494 1.46627 1.21561 0.94217 0.89708 1.08106 1.21671 0.92801 0.96577 0.98093 0.91122 1.22117 0.96474 0.98930 0.96891 1.22151 0.96856 0.96760 0.98842 1.22439 0.95483 0.90881 0.94585 0.96554 1.60725 1.09325 1.03733 1.56911 1.18947 0.83556 0.94551 0.92167 1.01967 1.21579 1.01070 0.96570 0.97965 1.21661 0.92194 0.93308 1.50128 0.91943 1.25803 0.97243 1.01266 0.94747 1.70057 1.02476 1.32443 1.51055 0.85400 0.78303 0.79795 0.77463 1.18729 1.20741 1.20742 1.22643 0.93985 0.96606 1.01143 0.91165 0.88447 0.91238 0.91599 0.91685 0.85417 0.84995 0.92740 0.90931 0.91598 0.94411 0.84692 0.95444 0.92969 0.95708 0.92952 0.88874 0.90632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.29 71.98 0.74 -0.62 16 2 C 0.05 0.81 6.19 71.98 0.45 1.25 16 3 O -0.36 -6.91 10.22 -51.36 -0.52 -7.44 16 4 C 0.46 9.95 7.77 71.24 0.55 10.50 16 5 O -0.54 -15.23 14.76 21.96 0.32 -14.90 16 6 C -0.10 -1.66 5.21 29.85 0.16 -1.51 16 7 C -0.07 -1.68 2.45 -9.72 -0.02 -1.71 16 8 H 0.07 1.83 7.90 -2.39 -0.02 1.81 16 9 C -0.11 -2.86 5.57 31.32 0.17 -2.69 16 10 C -0.11 -3.62 5.16 31.32 0.16 -3.46 16 11 C 0.08 2.74 3.18 46.00 0.15 2.88 16 12 H 0.02 0.67 7.44 -2.39 -0.02 0.66 16 13 N -0.68 -28.58 6.14 -467.76 -2.87 -31.45 16 14 C 0.22 11.31 2.60 44.17 0.11 11.43 16 15 H -0.04 -2.18 7.43 -2.39 -0.02 -2.20 16 16 C -0.11 -5.88 9.01 71.98 0.65 -5.23 16 17 C -0.53 -29.68 8.59 25.60 0.22 -29.46 16 18 H 0.06 3.36 7.62 -2.91 -0.02 3.33 16 19 C 0.01 0.46 5.30 84.66 0.45 0.91 16 20 N -0.92 -54.29 11.32 21.45 0.24 -54.05 16 21 Si 0.97 43.84 29.54 68.60 2.03 45.86 16 22 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 24 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 25 C -0.11 -2.68 5.69 31.90 0.18 -2.50 16 26 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.07 1.05 8.13 -2.39 -0.02 1.03 16 30 H 0.06 1.05 8.13 -2.39 -0.02 1.03 16 31 H 0.13 1.70 7.95 -2.39 -0.02 1.68 16 32 H 0.13 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.05 1.59 7.77 -2.39 -0.02 1.57 16 34 H 0.07 1.73 7.71 -2.39 -0.02 1.71 16 35 H 0.07 2.32 8.04 -2.39 -0.02 2.30 16 36 H 0.04 1.37 7.41 -2.38 -0.02 1.35 16 37 H 0.34 13.48 7.91 -89.69 -0.71 12.77 16 38 H 0.03 1.37 8.14 -2.39 -0.02 1.36 16 39 H 0.05 2.96 6.07 -2.38 -0.01 2.95 16 40 H 0.02 1.15 6.13 -2.39 -0.01 1.14 16 41 H 0.26 14.58 8.31 -92.70 -0.77 13.81 16 42 H 0.09 2.11 8.06 -2.39 -0.02 2.09 16 43 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -66.67 341.17 3.43 -63.23 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.27 Total: 18.94 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: 3.97 Total: -20.19 kcal Atomic # 7 Polarization: -82.87 SS G_CDS: -2.63 Total: -85.50 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.20 Total: -22.34 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -66.67 3.43 -63.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173650997.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.055 kcal (2) G-P(sol) polarization free energy of solvation -66.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds