Wall clock time and date at job start Mon Mar 30 2020 01:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45212 * 109.46973 * 2 1 4 4 C 1.34229 * 116.99957 * 179.97438 * 3 2 1 5 5 O 1.20822 * 119.99985 * 0.02562 * 4 3 2 6 6 C 1.50695 * 119.99760 * 179.97438 * 4 3 2 7 7 C 1.52996 * 109.47267 * 180.02562 * 6 4 3 8 8 H 1.09006 * 110.43597 * 303.91709 * 7 6 4 9 9 C 1.54890 * 110.48586 * 66.44982 * 7 6 4 10 10 C 1.54898 * 102.74592 * 156.75431 * 9 7 6 11 11 C 1.54258 * 104.19668 * 322.06302 * 10 9 7 12 12 H 1.09007 * 110.03204 * 264.27423 * 11 10 9 13 13 N 1.46900 * 110.03567 * 142.89302 * 11 10 9 14 14 C 1.46904 * 110.99936 * 86.44800 * 13 11 10 15 15 H 1.08999 * 109.47180 * 325.00994 * 14 13 11 16 16 C 1.53001 * 109.46994 * 85.00353 * 14 13 11 17 17 C 1.50701 * 109.47363 * 205.00360 * 14 13 11 18 18 H 1.07991 * 119.99705 * 354.48865 * 17 14 13 19 19 C 1.37874 * 120.00074 * 174.48888 * 17 14 13 20 20 N 1.31512 * 120.00093 * 164.79358 * 19 17 14 21 21 Si 1.86806 * 119.99812 * 344.79409 * 19 17 14 22 22 H 1.48497 * 109.47196 * 269.99813 * 21 19 17 23 23 H 1.48493 * 109.47336 * 30.00416 * 21 19 17 24 24 H 1.48500 * 109.46868 * 150.00080 * 21 19 17 25 25 C 1.53872 * 106.60246 * 23.60726 * 11 10 9 26 26 H 1.09000 * 109.47247 * 60.00270 * 1 2 3 27 27 H 1.09001 * 109.46971 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47497 * 299.99917 * 1 2 3 29 29 H 1.09000 * 109.47497 * 240.00083 * 2 1 3 30 30 H 1.09000 * 109.47247 * 119.99730 * 2 1 3 31 31 H 1.09004 * 109.47372 * 60.00310 * 6 4 3 32 32 H 1.09007 * 109.47481 * 300.00249 * 6 4 3 33 33 H 1.09002 * 110.75222 * 38.44661 * 9 7 6 34 34 H 1.08997 * 110.76402 * 275.06823 * 9 7 6 35 35 H 1.09002 * 110.48536 * 203.37836 * 10 9 7 36 36 H 1.09004 * 110.48192 * 80.74362 * 10 9 7 37 37 H 1.00897 * 111.00384 * 210.40681 * 13 11 10 38 38 H 1.09002 * 109.47128 * 293.55093 * 16 14 13 39 39 H 1.09001 * 109.47164 * 53.54370 * 16 14 13 40 40 H 1.08994 * 109.47265 * 173.54342 * 16 14 13 41 41 H 0.96996 * 120.00162 * 354.90674 * 20 19 17 42 42 H 1.09000 * 110.03299 * 119.28174 * 25 11 10 43 43 H 1.09000 * 110.03468 * 240.71442 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3447 1.5450 0.0005 5 8 4.0807 0.5868 0.0005 6 6 3.9206 2.9375 0.0000 7 6 5.4485 2.8576 0.0001 8 1 5.7987 2.2689 0.8480 9 6 5.9596 2.2498 -1.3297 10 6 7.4097 2.7875 -1.4162 11 6 7.3129 4.2263 -0.8683 12 1 7.2054 4.9328 -1.6913 13 7 8.5123 4.5476 -0.0832 14 6 9.5861 5.0565 -0.9469 15 1 9.5497 4.5475 -1.9101 16 6 9.4013 6.5606 -1.1577 17 6 10.9199 4.8009 -0.2937 18 1 10.9625 4.3912 0.7046 19 6 12.0857 5.0901 -0.9706 20 7 13.2258 5.1560 -0.3183 21 14 12.0458 5.3884 -2.8142 22 1 12.2433 4.1014 -3.5282 23 1 10.7326 5.9686 -3.1935 24 1 13.1301 6.3324 -3.1864 25 6 6.0660 4.2709 0.0322 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.5842 3.4702 0.8895 32 1 3.5850 3.4692 -0.8905 33 1 5.3648 2.6058 -2.1709 34 1 5.9536 1.1608 -1.2843 35 1 7.7525 2.7955 -2.4508 36 1 8.0766 2.1875 -0.7970 37 1 8.2979 5.2042 0.6523 38 1 8.4917 6.7380 -1.7316 39 1 9.3228 7.0562 -0.1901 40 1 10.2577 6.9591 -1.7016 41 1 13.2370 5.0747 0.6482 42 1 6.3508 4.5308 1.0517 43 1 5.3525 4.9990 -0.3537 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173650998.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:21 Heat of formation + Delta-G solvation = -107.917653 kcal Electronic energy + Delta-G solvation = -20819.028325 eV Core-core repulsion = 17670.333506 eV Total energy + Delta-G solvation = -3148.694819 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.71414 -38.55169 -36.80850 -35.25288 -32.58835 -32.06766 -30.89920 -29.10524 -27.33319 -25.22879 -24.50311 -23.37253 -21.40800 -20.30068 -19.66904 -19.40014 -17.80684 -17.33340 -16.91151 -16.56531 -15.29838 -14.96336 -14.71722 -14.14848 -13.98524 -13.42052 -13.33434 -13.25942 -13.07090 -12.70957 -12.50485 -12.12552 -11.95071 -11.89708 -11.80817 -11.32125 -11.04391 -10.89064 -10.79361 -10.71200 -10.59771 -10.44324 -10.41810 -10.29743 -10.25168 -9.97912 -9.54520 -8.82363 -8.21140 -7.35937 -6.33798 -3.94347 2.08625 2.46588 3.44240 3.46477 3.61004 4.43725 4.56214 4.57912 4.61683 4.65720 4.74394 4.92536 4.96675 5.08961 5.20388 5.33888 5.34898 5.39366 5.41029 5.59860 5.65381 5.66128 5.84618 5.89296 5.97123 6.06997 6.18600 6.26993 6.31324 6.39290 6.42459 6.45782 6.58993 6.68948 6.78301 6.98683 7.24311 7.62511 7.91767 8.35420 8.44764 8.54801 9.09873 9.72860 11.04072 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.047243 B = 0.003191 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.543682 B = 8772.614856 C = 8854.769025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.364 6.364 4 C 0.460 3.540 5 O -0.500 6.500 6 C -0.106 4.106 7 C -0.077 4.077 8 H 0.085 0.915 9 C -0.119 4.119 10 C -0.112 4.112 11 C 0.081 3.919 12 H 0.037 0.963 13 N -0.668 5.668 14 C 0.187 3.813 15 H 0.027 0.973 16 C -0.175 4.175 17 C -0.578 4.578 18 H 0.062 0.938 19 C 0.026 3.974 20 N -0.913 5.913 21 Si 1.042 2.958 22 H -0.287 1.287 23 H -0.275 1.275 24 H -0.288 1.288 25 C -0.118 4.118 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.081 0.919 37 H 0.327 0.673 38 H 0.018 0.982 39 H 0.042 0.958 40 H 0.053 0.947 41 H 0.267 0.733 42 H 0.072 0.928 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.314 -5.322 -0.856 25.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.282 6.282 4 C 0.303 3.697 5 O -0.387 6.387 6 C -0.144 4.144 7 C -0.096 4.096 8 H 0.104 0.896 9 C -0.156 4.156 10 C -0.150 4.150 11 C -0.030 4.030 12 H 0.054 0.946 13 N -0.298 5.298 14 C 0.078 3.922 15 H 0.045 0.955 16 C -0.234 4.234 17 C -0.617 4.617 18 H 0.080 0.920 19 C -0.178 4.178 20 N -0.548 5.548 21 Si 0.871 3.129 22 H -0.214 1.214 23 H -0.200 1.200 24 H -0.214 1.214 25 C -0.156 4.156 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.099 0.901 37 H 0.145 0.855 38 H 0.037 0.963 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -23.899 -5.988 -2.172 24.733 hybrid contribution -1.274 0.489 1.113 1.761 sum -25.173 -5.499 -1.060 25.789 Atomic orbital electron populations 1.21805 0.92726 1.02930 1.03478 1.23000 0.95269 0.80435 1.02624 1.86515 1.25078 1.32270 1.84316 1.23923 0.80239 0.93239 0.72345 1.90677 1.60177 1.43231 1.44609 1.21570 0.96865 0.90408 1.05532 1.21800 0.90273 0.97352 1.00157 0.89619 1.22597 0.96637 1.00860 0.95554 1.22410 0.95759 0.96171 1.00656 1.22120 0.89846 0.96360 0.94685 0.94553 1.60893 1.06184 1.49401 1.13371 1.19577 0.91180 0.88544 0.92929 0.95475 1.22854 0.98931 1.01797 0.99806 1.21997 0.89734 1.45873 1.04050 0.91995 1.25672 0.92265 0.93809 1.06023 1.70790 1.27603 1.46308 1.10128 0.84134 0.75632 0.77108 0.76032 1.21374 1.20035 1.21378 1.22383 0.96912 0.95525 1.00764 0.91504 0.90296 0.91505 0.91258 0.91274 0.87826 0.87758 0.92453 0.90797 0.92482 0.90081 0.85535 0.96251 0.93841 0.92760 0.92274 0.90955 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 10.29 37.16 0.38 -0.46 16 2 C 0.06 0.50 6.19 37.16 0.23 0.73 16 3 O -0.36 -3.75 10.22 -39.25 -0.40 -4.15 16 4 C 0.46 5.29 7.74 36.00 0.28 5.57 16 5 O -0.50 -7.22 14.25 -18.75 -0.27 -7.49 16 6 C -0.11 -1.01 5.18 -27.89 -0.14 -1.16 16 7 C -0.08 -0.95 2.47 -88.96 -0.22 -1.17 16 8 H 0.09 1.19 8.02 -51.93 -0.42 0.77 16 9 C -0.12 -1.62 5.63 -24.73 -0.14 -1.76 16 10 C -0.11 -1.86 6.33 -25.07 -0.16 -2.02 16 11 C 0.08 1.35 3.03 -66.60 -0.20 1.15 16 12 H 0.04 0.63 7.23 -51.93 -0.38 0.25 16 13 N -0.67 -13.74 5.99 -99.78 -0.60 -14.34 16 14 C 0.19 4.46 1.96 -68.86 -0.14 4.32 16 15 H 0.03 0.67 6.36 -51.93 -0.33 0.34 16 16 C -0.17 -3.82 8.45 37.16 0.31 -3.50 16 17 C -0.58 -16.50 9.13 -34.44 -0.31 -16.81 16 18 H 0.06 1.94 8.06 -52.49 -0.42 1.52 16 19 C 0.03 0.77 5.33 -17.82 -0.09 0.67 16 20 N -0.91 -28.56 13.70 55.43 0.76 -27.80 16 21 Si 1.04 25.54 26.17 -169.99 -4.45 21.09 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.27 -6.16 5.54 56.52 0.31 -5.84 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 25 C -0.12 -1.53 6.06 -25.61 -0.16 -1.68 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 30 H 0.07 0.58 8.13 -51.93 -0.42 0.15 16 31 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.10 0.84 8.10 -51.93 -0.42 0.42 16 33 H 0.06 0.70 8.02 -51.93 -0.42 0.29 16 34 H 0.07 1.08 7.06 -51.93 -0.37 0.72 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.08 1.53 8.05 -51.93 -0.42 1.11 16 37 H 0.33 6.36 7.71 -39.29 -0.30 6.05 16 38 H 0.02 0.36 7.54 -51.93 -0.39 -0.03 16 39 H 0.04 0.91 8.01 -51.93 -0.42 0.50 16 40 H 0.05 1.24 5.06 -51.93 -0.26 0.97 16 41 H 0.27 8.34 8.73 -40.82 -0.36 7.99 16 42 H 0.07 0.94 7.49 -51.93 -0.39 0.55 16 43 H 0.06 0.68 7.84 -51.93 -0.41 0.27 16 LS Contribution 338.12 15.07 5.10 5.10 Total: -1.00 -32.23 338.12 -7.75 -39.99 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -7.54 Total: 3.73 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: -0.36 Total: -16.13 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: 0.16 Total: -42.14 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: -0.67 Total: -11.63 kcal Atomic # 14 Polarization: 25.54 SS G_CDS: -4.45 Total: 21.09 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.23 -7.75 -39.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173650998.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.930 kcal (2) G-P(sol) polarization free energy of solvation -32.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds