Wall clock time and date at job start Mon Mar 30 2020 01:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45212 * 109.46973 * 2 1 4 4 C 1.34229 * 116.99957 * 179.97438 * 3 2 1 5 5 O 1.20822 * 119.99985 * 0.02562 * 4 3 2 6 6 C 1.50695 * 119.99760 * 179.97438 * 4 3 2 7 7 C 1.52996 * 109.47267 * 180.02562 * 6 4 3 8 8 H 1.09006 * 110.43597 * 303.91709 * 7 6 4 9 9 C 1.54890 * 110.48586 * 66.44982 * 7 6 4 10 10 C 1.54898 * 102.74592 * 156.75431 * 9 7 6 11 11 C 1.54258 * 104.19668 * 322.06302 * 10 9 7 12 12 H 1.09007 * 110.03204 * 264.27423 * 11 10 9 13 13 N 1.46900 * 110.03567 * 142.89302 * 11 10 9 14 14 C 1.46904 * 110.99936 * 86.44800 * 13 11 10 15 15 H 1.08999 * 109.47180 * 325.00994 * 14 13 11 16 16 C 1.53001 * 109.46994 * 85.00353 * 14 13 11 17 17 C 1.50701 * 109.47363 * 205.00360 * 14 13 11 18 18 H 1.07991 * 119.99705 * 354.48865 * 17 14 13 19 19 C 1.37874 * 120.00074 * 174.48888 * 17 14 13 20 20 N 1.31512 * 120.00093 * 164.79358 * 19 17 14 21 21 Si 1.86806 * 119.99812 * 344.79409 * 19 17 14 22 22 H 1.48497 * 109.47196 * 269.99813 * 21 19 17 23 23 H 1.48493 * 109.47336 * 30.00416 * 21 19 17 24 24 H 1.48500 * 109.46868 * 150.00080 * 21 19 17 25 25 C 1.53872 * 106.60246 * 23.60726 * 11 10 9 26 26 H 1.09000 * 109.47247 * 60.00270 * 1 2 3 27 27 H 1.09001 * 109.46971 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47497 * 299.99917 * 1 2 3 29 29 H 1.09000 * 109.47497 * 240.00083 * 2 1 3 30 30 H 1.09000 * 109.47247 * 119.99730 * 2 1 3 31 31 H 1.09004 * 109.47372 * 60.00310 * 6 4 3 32 32 H 1.09007 * 109.47481 * 300.00249 * 6 4 3 33 33 H 1.09002 * 110.75222 * 38.44661 * 9 7 6 34 34 H 1.08997 * 110.76402 * 275.06823 * 9 7 6 35 35 H 1.09002 * 110.48536 * 203.37836 * 10 9 7 36 36 H 1.09004 * 110.48192 * 80.74362 * 10 9 7 37 37 H 1.00897 * 111.00384 * 210.40681 * 13 11 10 38 38 H 1.09002 * 109.47128 * 293.55093 * 16 14 13 39 39 H 1.09001 * 109.47164 * 53.54370 * 16 14 13 40 40 H 1.08994 * 109.47265 * 173.54342 * 16 14 13 41 41 H 0.96996 * 120.00162 * 354.90674 * 20 19 17 42 42 H 1.09000 * 110.03299 * 119.28174 * 25 11 10 43 43 H 1.09000 * 110.03468 * 240.71442 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3447 1.5450 0.0005 5 8 4.0807 0.5868 0.0005 6 6 3.9206 2.9375 0.0000 7 6 5.4485 2.8576 0.0001 8 1 5.7987 2.2689 0.8480 9 6 5.9596 2.2498 -1.3297 10 6 7.4097 2.7875 -1.4162 11 6 7.3129 4.2263 -0.8683 12 1 7.2054 4.9328 -1.6913 13 7 8.5123 4.5476 -0.0832 14 6 9.5861 5.0565 -0.9469 15 1 9.5497 4.5475 -1.9101 16 6 9.4013 6.5606 -1.1577 17 6 10.9199 4.8009 -0.2937 18 1 10.9625 4.3912 0.7046 19 6 12.0857 5.0901 -0.9706 20 7 13.2258 5.1560 -0.3183 21 14 12.0458 5.3884 -2.8142 22 1 12.2433 4.1014 -3.5282 23 1 10.7326 5.9686 -3.1935 24 1 13.1301 6.3324 -3.1864 25 6 6.0660 4.2709 0.0322 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.5842 3.4702 0.8895 32 1 3.5850 3.4692 -0.8905 33 1 5.3648 2.6058 -2.1709 34 1 5.9536 1.1608 -1.2843 35 1 7.7525 2.7955 -2.4508 36 1 8.0766 2.1875 -0.7970 37 1 8.2979 5.2042 0.6523 38 1 8.4917 6.7380 -1.7316 39 1 9.3228 7.0562 -0.1901 40 1 10.2577 6.9591 -1.7016 41 1 13.2370 5.0747 0.6482 42 1 6.3508 4.5308 1.0517 43 1 5.3525 4.9990 -0.3537 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173650998.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:21 Heat of formation + Delta-G solvation = -128.999809 kcal Electronic energy + Delta-G solvation = -20819.942516 eV Core-core repulsion = 17670.333506 eV Total energy + Delta-G solvation = -3149.609010 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.58697 -39.75318 -37.78913 -36.81617 -34.43195 -32.93171 -32.06344 -30.54108 -28.52648 -26.80019 -26.21515 -24.03815 -22.38019 -21.91797 -20.95273 -20.65295 -19.50393 -18.63028 -17.72306 -17.47823 -16.70226 -16.23022 -15.71132 -15.66775 -15.23153 -15.07582 -14.44959 -14.28339 -14.15307 -13.91060 -13.70949 -13.60663 -13.19167 -13.08567 -12.79372 -12.49013 -12.48393 -12.21053 -12.10814 -11.93512 -11.83832 -11.70765 -11.62979 -11.54914 -11.40646 -11.38308 -11.26499 -10.98914 -10.44893 -9.02669 -8.63438 -6.28898 1.23467 1.46658 1.52504 1.69958 1.73043 2.51947 3.10825 3.51107 3.62289 3.65079 3.84293 3.97920 4.00768 4.10047 4.33604 4.35569 4.49871 4.52089 4.55748 4.57375 4.69163 4.71362 4.74872 4.79823 4.86841 4.92154 4.92763 4.97137 5.05337 5.10263 5.15058 5.19666 5.36021 5.39305 5.48461 5.53715 5.55290 5.95371 6.11194 6.48586 6.78909 6.80481 6.86624 7.49103 8.68963 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.047243 B = 0.003191 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.543682 B = 8772.614856 C = 8854.769025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 O -0.363 6.363 4 C 0.459 3.541 5 O -0.539 6.539 6 C -0.099 4.099 7 C -0.072 4.072 8 H 0.062 0.938 9 C -0.109 4.109 10 C -0.116 4.116 11 C 0.077 3.923 12 H 0.044 0.956 13 N -0.685 5.685 14 C 0.190 3.810 15 H 0.025 0.975 16 C -0.169 4.169 17 C -0.581 4.581 18 H 0.016 0.984 19 C -0.028 4.028 20 N -0.947 5.947 21 Si 1.085 2.915 22 H -0.279 1.279 23 H -0.237 1.237 24 H -0.287 1.287 25 C -0.108 4.108 26 H 0.070 0.930 27 H 0.096 0.904 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.045 0.955 37 H 0.332 0.668 38 H 0.053 0.947 39 H 0.044 0.956 40 H 0.044 0.956 41 H 0.250 0.750 42 H 0.071 0.929 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.771 -4.072 -2.483 29.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.021 4.021 3 O -0.280 6.280 4 C 0.304 3.696 5 O -0.428 6.428 6 C -0.136 4.136 7 C -0.091 4.091 8 H 0.081 0.919 9 C -0.146 4.146 10 C -0.155 4.155 11 C -0.033 4.033 12 H 0.062 0.938 13 N -0.316 5.316 14 C 0.080 3.920 15 H 0.043 0.957 16 C -0.228 4.228 17 C -0.619 4.619 18 H 0.034 0.966 19 C -0.224 4.224 20 N -0.584 5.584 21 Si 0.906 3.094 22 H -0.206 1.206 23 H -0.160 1.160 24 H -0.213 1.213 25 C -0.145 4.145 26 H 0.089 0.911 27 H 0.115 0.885 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.151 0.849 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.089 0.911 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -27.410 -4.737 -3.776 28.072 hybrid contribution -0.229 -0.013 1.729 1.744 sum -27.639 -4.750 -2.048 28.119 Atomic orbital electron populations 1.21814 0.90422 1.04244 1.03786 1.23234 0.97080 0.79589 1.02243 1.86516 1.24360 1.33323 1.83848 1.24348 0.80392 0.93633 0.71209 1.90676 1.61018 1.44608 1.46539 1.21576 0.94245 0.89608 1.08136 1.21666 0.92557 0.96509 0.98369 0.91939 1.22510 0.94858 0.99945 0.97326 1.22399 0.97205 0.96201 0.99663 1.22245 0.89779 0.95960 0.95271 0.93793 1.60703 1.07518 1.49529 1.13846 1.19362 0.89830 0.90273 0.92516 0.95731 1.22696 1.00157 0.99478 1.00468 1.22240 0.92832 1.44625 1.02229 0.96576 1.27172 0.91773 0.93218 1.10285 1.70926 1.28998 1.49331 1.09154 0.83626 0.77539 0.77612 0.70594 1.20566 1.16023 1.21295 1.22312 0.95681 0.96551 0.99993 0.91135 0.88518 0.91180 0.91668 0.91773 0.85144 0.84997 0.90141 0.92370 0.92835 0.93563 0.84914 0.92767 0.93681 0.93739 0.94090 0.91081 0.88504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.29 71.98 0.74 -0.56 16 2 C 0.05 0.80 6.19 71.98 0.45 1.24 16 3 O -0.36 -6.70 10.22 -51.40 -0.53 -7.22 16 4 C 0.46 9.67 7.74 71.23 0.55 10.22 16 5 O -0.54 -15.31 14.25 21.98 0.31 -14.99 16 6 C -0.10 -1.52 5.18 29.85 0.15 -1.36 16 7 C -0.07 -1.62 2.47 -9.72 -0.02 -1.64 16 8 H 0.06 1.70 8.02 -2.38 -0.02 1.68 16 9 C -0.11 -2.80 5.63 31.89 0.18 -2.62 16 10 C -0.12 -3.80 6.33 31.67 0.20 -3.60 16 11 C 0.08 2.43 3.03 45.64 0.14 2.56 16 12 H 0.04 1.34 7.23 -2.38 -0.02 1.33 16 13 N -0.69 -27.71 5.99 -469.60 -2.81 -30.52 16 14 C 0.19 8.89 1.96 44.17 0.09 8.97 16 15 H 0.02 1.18 6.36 -2.39 -0.02 1.16 16 16 C -0.17 -6.92 8.45 71.98 0.61 -6.31 16 17 C -0.58 -34.00 9.13 25.60 0.23 -33.76 16 18 H 0.02 1.05 8.06 -2.92 -0.02 1.03 16 19 C -0.03 -1.66 5.33 84.65 0.45 -1.21 16 20 N -0.95 -61.25 13.70 21.45 0.29 -60.95 16 21 Si 1.09 50.93 26.17 68.60 1.80 52.73 16 22 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 23 H -0.24 -9.60 5.54 99.48 0.55 -9.05 16 24 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 25 C -0.11 -2.43 6.06 31.32 0.19 -2.24 16 26 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.07 0.59 8.14 -2.39 -0.02 0.58 16 29 H 0.06 1.04 8.13 -2.39 -0.02 1.02 16 30 H 0.06 1.03 8.13 -2.39 -0.02 1.01 16 31 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.13 1.40 8.10 -2.38 -0.02 1.38 16 33 H 0.08 1.71 8.02 -2.39 -0.02 1.69 16 34 H 0.06 1.70 7.06 -2.39 -0.02 1.68 16 35 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.05 1.81 8.05 -2.38 -0.02 1.79 16 37 H 0.33 12.62 7.71 -89.70 -0.69 11.93 16 38 H 0.05 1.84 7.54 -2.39 -0.02 1.83 16 39 H 0.04 1.80 8.01 -2.39 -0.02 1.78 16 40 H 0.04 1.89 5.06 -2.39 -0.01 1.88 16 41 H 0.25 16.49 8.73 -92.71 -0.81 15.68 16 42 H 0.07 1.66 7.49 -2.39 -0.02 1.64 16 43 H 0.10 1.58 7.84 -2.39 -0.02 1.56 16 Total: -1.00 -73.33 338.12 3.11 -70.21 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 0.09 Total: 21.07 kcal Atomic # 6 Polarization: -34.27 SS G_CDS: 3.96 Total: -30.32 kcal Atomic # 7 Polarization: -88.96 SS G_CDS: -2.52 Total: -91.48 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.21 Total: -22.21 kcal Atomic # 14 Polarization: 50.93 SS G_CDS: 1.80 Total: 52.73 kcal Total: -73.33 3.11 -70.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173650998.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.785 kcal (2) G-P(sol) polarization free energy of solvation -73.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds