Wall clock time and date at job start Mon Mar 30 2020 01:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42903 * 109.47393 * 2 1 4 4 C 1.42897 * 114.00107 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46934 * 60.00322 * 4 3 2 6 6 C 1.52993 * 109.47316 * 299.99992 * 4 3 2 7 7 C 1.50698 * 109.46873 * 179.97438 * 4 3 2 8 8 O 1.21284 * 120.00326 * 0.02562 * 7 4 3 9 9 N 1.34781 * 119.99788 * 180.02562 * 7 4 3 10 10 C 1.46498 * 119.99847 * 180.02562 * 9 7 4 11 11 H 1.09001 * 109.41433 * 324.85459 * 10 9 7 12 12 C 1.52959 * 109.41765 * 84.64765 * 10 9 7 13 13 C 1.53659 * 109.32409 * 183.83408 * 12 10 9 14 14 C 1.51265 * 108.31243 * 305.13494 * 13 12 10 15 15 C 1.37871 * 120.85368 * 231.38391 * 14 13 12 16 16 N 1.31512 * 120.00422 * 174.56911 * 15 14 13 17 17 Si 1.86803 * 119.99828 * 354.56805 * 15 14 13 18 18 H 1.48504 * 109.46902 * 90.00235 * 17 15 14 19 19 H 1.48495 * 109.47270 * 329.99934 * 17 15 14 20 20 H 1.48500 * 109.47240 * 209.99801 * 17 15 14 21 21 C 1.51271 * 118.29782 * 51.65724 * 14 13 12 22 22 C 1.52955 * 109.41309 * 204.99907 * 10 9 7 23 23 H 1.08999 * 109.46742 * 299.99856 * 1 2 3 24 24 H 1.08993 * 109.47078 * 59.99921 * 1 2 3 25 25 H 1.08995 * 109.46865 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47158 * 240.00235 * 2 1 3 27 27 H 1.09003 * 109.47038 * 120.00182 * 2 1 3 28 28 H 1.09001 * 109.46869 * 180.02562 * 5 4 3 29 29 H 1.09007 * 109.46997 * 299.99618 * 5 4 3 30 30 H 1.08999 * 109.47436 * 59.99625 * 5 4 3 31 31 H 1.08996 * 109.47120 * 300.00092 * 6 4 3 32 32 H 1.09007 * 109.47129 * 60.00067 * 6 4 3 33 33 H 1.09001 * 109.47385 * 180.02562 * 6 4 3 34 34 H 0.96997 * 120.00150 * 0.02562 * 9 7 4 35 35 H 1.09002 * 109.47969 * 303.68058 * 12 10 9 36 36 H 1.08993 * 109.48254 * 63.71973 * 12 10 9 37 37 H 1.09007 * 109.69018 * 185.51667 * 13 12 10 38 38 H 1.09003 * 109.78666 * 64.80969 * 13 12 10 39 39 H 0.97002 * 120.00071 * 5.61070 * 16 15 14 40 40 H 1.09003 * 109.62737 * 68.11500 * 21 14 13 41 41 H 1.08997 * 109.62522 * 188.49300 * 21 14 13 42 42 H 1.09008 * 109.48039 * 56.31311 * 22 10 9 43 43 H 1.08998 * 109.48721 * 296.27421 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4601 0.0006 5 6 3.9968 0.7812 -1.2484 6 6 3.9958 0.7816 1.2501 7 6 3.8195 2.9161 -0.0001 8 8 2.9611 3.7729 -0.0005 9 7 5.1210 3.2662 -0.0002 10 6 5.4988 4.6817 -0.0003 11 1 4.7800 5.2484 -0.5921 12 6 5.5000 5.2077 1.4359 13 6 5.8023 6.7143 1.4254 14 6 7.1007 6.9333 0.6810 15 6 8.1199 7.6746 1.2400 16 7 9.2797 7.7658 0.6267 17 14 7.8535 8.5494 2.8689 18 1 8.2339 7.6456 3.9842 19 1 6.4227 8.9241 3.0014 20 1 8.6923 9.7739 2.9162 21 6 7.2500 6.3234 -0.6953 22 6 6.8930 4.8357 -0.6101 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 5.0834 0.8668 -1.2477 29 1 3.7157 -0.2720 -1.2483 30 1 3.5944 1.2646 -2.1386 31 1 3.5927 1.2652 2.1398 32 1 3.7147 -0.2717 1.2501 33 1 5.0824 0.8680 1.2508 34 1 5.8076 2.5810 -0.0003 35 1 4.5220 5.0376 1.8862 36 1 6.2624 4.6853 2.0138 37 1 5.9014 7.0762 2.4488 38 1 4.9968 7.2487 0.9216 39 1 9.3930 7.3805 -0.2563 40 1 6.5762 6.8222 -1.3919 41 1 8.2790 6.4371 -1.0364 42 1 6.9025 4.4018 -1.6101 43 1 7.6226 4.3221 0.0161 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181153259.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:54 Heat of formation + Delta-G solvation = -107.938811 kcal Electronic energy + Delta-G solvation = -21692.226449 eV Core-core repulsion = 18543.530713 eV Total energy + Delta-G solvation = -3148.695736 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.23442 -38.25250 -36.64043 -34.11430 -33.16099 -31.41333 -30.60455 -29.72834 -27.71371 -26.92639 -24.35865 -22.62755 -21.73448 -21.21860 -19.68504 -19.52405 -17.44118 -16.68082 -16.30030 -15.86922 -15.44129 -14.82687 -14.65477 -13.84013 -13.78819 -13.62886 -13.31104 -12.88747 -12.74073 -12.56939 -12.55392 -12.29400 -12.22186 -12.05289 -11.85944 -11.55730 -11.33603 -11.10365 -11.06403 -10.67943 -10.37069 -10.31848 -10.04696 -9.71706 -9.67943 -9.43151 -9.11101 -8.70548 -8.41555 -8.21018 -6.43609 -4.02237 2.87971 2.99644 3.40449 3.46071 3.61470 3.88448 4.47551 4.49962 4.71617 4.74624 4.88054 5.01639 5.12761 5.18794 5.21971 5.24218 5.42792 5.48547 5.59202 5.68205 5.69991 5.79060 5.81787 5.93855 5.95341 6.12797 6.40540 6.43492 6.64059 6.72756 6.77317 6.90834 6.99273 7.08880 7.17085 7.26142 7.37981 7.57762 7.85634 8.07023 8.31002 8.53944 8.87126 9.59853 10.94016 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.037345 B = 0.004158 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.583174 B = 6733.073599 C = 7039.212018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.353 6.353 4 C 0.097 3.903 5 C -0.176 4.176 6 C -0.176 4.176 7 C 0.522 3.478 8 O -0.521 6.521 9 N -0.721 5.721 10 C 0.157 3.843 11 H 0.077 0.923 12 C -0.114 4.114 13 C -0.006 4.006 14 C -0.568 4.568 15 C 0.035 3.965 16 N -0.909 5.909 17 Si 1.063 2.937 18 H -0.286 1.286 19 H -0.283 1.283 20 H -0.288 1.288 21 C 0.004 3.996 22 C -0.111 4.111 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.392 0.608 35 H 0.036 0.964 36 H 0.051 0.949 37 H 0.030 0.970 38 H 0.014 0.986 39 H 0.271 0.729 40 H 0.008 0.992 41 H 0.040 0.960 42 H 0.035 0.965 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.644 -17.531 -1.104 20.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.271 6.271 4 C 0.054 3.946 5 C -0.234 4.234 6 C -0.234 4.234 7 C 0.306 3.694 8 O -0.396 6.396 9 N -0.372 5.372 10 C 0.055 3.945 11 H 0.096 0.904 12 C -0.153 4.153 13 C -0.044 4.044 14 C -0.587 4.587 15 C -0.170 4.170 16 N -0.545 5.545 17 Si 0.892 3.108 18 H -0.212 1.212 19 H -0.209 1.209 20 H -0.215 1.215 21 C -0.034 4.034 22 C -0.149 4.149 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.226 0.774 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.048 0.952 38 H 0.033 0.967 39 H 0.084 0.916 40 H 0.027 0.973 41 H 0.059 0.941 42 H 0.053 0.947 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.627 -15.821 0.030 18.520 hybrid contribution -0.234 -1.658 -1.165 2.039 sum -9.861 -17.479 -1.135 20.101 Atomic orbital electron populations 1.21721 0.93615 1.01970 1.03420 1.22568 0.95621 0.84404 1.00152 1.88117 1.18260 1.25790 1.94958 1.21364 0.83184 0.94000 0.96073 1.22408 1.02053 1.01222 0.97686 1.22404 1.02106 1.01169 0.97697 1.19883 0.83244 0.89286 0.76977 1.90714 1.49417 1.51397 1.48065 1.46327 1.06080 1.09897 1.74908 1.21010 0.97049 0.78304 0.98138 0.90446 1.21989 0.98698 0.99940 0.94653 1.19671 0.97107 0.90945 0.96690 1.21036 1.00858 1.34595 1.02212 1.25754 0.91882 0.95071 1.04282 1.70807 1.23241 1.44796 1.15692 0.83624 0.75373 0.76829 0.74952 1.21248 1.20881 1.21476 1.19391 0.97276 0.89895 0.96816 1.21861 0.94319 1.01373 0.97380 0.91751 0.91775 0.91204 0.93129 0.93093 0.90777 0.91192 0.91073 0.90990 0.91202 0.90745 0.77423 0.94491 0.93038 0.95196 0.96744 0.91608 0.97345 0.94143 0.94653 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.28 37.16 0.38 -0.93 16 2 C 0.05 0.48 5.86 37.16 0.22 0.70 16 3 O -0.35 -5.06 9.52 -55.14 -0.52 -5.58 16 4 C 0.10 1.25 0.97 -91.78 -0.09 1.16 16 5 C -0.18 -1.75 8.15 37.16 0.30 -1.45 16 6 C -0.18 -1.80 8.15 37.15 0.30 -1.50 16 7 C 0.52 8.96 6.52 -10.98 -0.07 8.89 16 8 O -0.52 -11.47 16.16 -14.36 -0.23 -11.70 16 9 N -0.72 -11.58 4.86 -53.85 -0.26 -11.85 16 10 C 0.16 3.14 2.34 -67.98 -0.16 2.98 16 11 H 0.08 1.73 7.58 -51.93 -0.39 1.34 16 12 C -0.11 -2.45 5.52 -26.41 -0.15 -2.59 16 13 C -0.01 -0.14 5.58 -27.26 -0.15 -0.29 16 14 C -0.57 -14.96 5.50 -98.93 -0.54 -15.50 16 15 C 0.03 0.96 5.46 -17.82 -0.10 0.87 16 16 N -0.91 -26.55 13.66 55.43 0.76 -25.79 16 17 Si 1.06 25.01 27.48 -169.99 -4.67 20.33 16 18 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.28 -6.35 6.71 56.52 0.38 -5.97 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 C 0.00 0.11 5.96 -27.48 -0.16 -0.06 16 22 C -0.11 -2.24 5.40 -26.64 -0.14 -2.38 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.42 6.42 -51.93 -0.33 0.09 16 27 H 0.05 0.43 6.42 -51.93 -0.33 0.10 16 28 H 0.07 0.63 7.56 -51.93 -0.39 0.24 16 29 H 0.07 0.54 6.54 -51.92 -0.34 0.20 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.56 6.54 -51.92 -0.34 0.22 16 33 H 0.07 0.66 7.57 -51.93 -0.39 0.27 16 34 H 0.39 5.04 7.44 -40.82 -0.30 4.74 16 35 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.03 0.70 5.01 -51.92 -0.26 0.44 16 38 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.27 7.81 6.36 -40.82 -0.26 7.55 16 40 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 41 H 0.04 1.02 5.79 -51.93 -0.30 0.72 16 42 H 0.03 0.64 8.14 -51.92 -0.42 0.21 16 43 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 331.08 15.07 4.99 4.99 Total: -1.00 -32.08 331.08 -7.42 -39.50 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -7.12 Total: 0.21 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: -0.36 Total: -10.11 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.50 Total: -37.64 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.76 Total: -17.29 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -4.67 Total: 20.33 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.08 -7.42 -39.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181153259.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.440 kcal (2) G-P(sol) polarization free energy of solvation -32.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds