Wall clock time and date at job start Mon Mar 30 2020 01:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42903 * 109.47393 * 2 1 4 4 C 1.42897 * 114.00107 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46934 * 60.00322 * 4 3 2 6 6 C 1.52993 * 109.47316 * 299.99992 * 4 3 2 7 7 C 1.50698 * 109.46873 * 179.97438 * 4 3 2 8 8 O 1.21284 * 120.00326 * 0.02562 * 7 4 3 9 9 N 1.34781 * 119.99788 * 180.02562 * 7 4 3 10 10 C 1.46498 * 119.99847 * 180.02562 * 9 7 4 11 11 H 1.09001 * 109.41433 * 324.85459 * 10 9 7 12 12 C 1.52959 * 109.41765 * 84.64765 * 10 9 7 13 13 C 1.53659 * 109.32409 * 183.83408 * 12 10 9 14 14 C 1.51265 * 108.31243 * 305.13494 * 13 12 10 15 15 C 1.37871 * 120.85368 * 231.38391 * 14 13 12 16 16 N 1.31512 * 120.00422 * 174.56911 * 15 14 13 17 17 Si 1.86803 * 119.99828 * 354.56805 * 15 14 13 18 18 H 1.48504 * 109.46902 * 90.00235 * 17 15 14 19 19 H 1.48495 * 109.47270 * 329.99934 * 17 15 14 20 20 H 1.48500 * 109.47240 * 209.99801 * 17 15 14 21 21 C 1.51271 * 118.29782 * 51.65724 * 14 13 12 22 22 C 1.52955 * 109.41309 * 204.99907 * 10 9 7 23 23 H 1.08999 * 109.46742 * 299.99856 * 1 2 3 24 24 H 1.08993 * 109.47078 * 59.99921 * 1 2 3 25 25 H 1.08995 * 109.46865 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47158 * 240.00235 * 2 1 3 27 27 H 1.09003 * 109.47038 * 120.00182 * 2 1 3 28 28 H 1.09001 * 109.46869 * 180.02562 * 5 4 3 29 29 H 1.09007 * 109.46997 * 299.99618 * 5 4 3 30 30 H 1.08999 * 109.47436 * 59.99625 * 5 4 3 31 31 H 1.08996 * 109.47120 * 300.00092 * 6 4 3 32 32 H 1.09007 * 109.47129 * 60.00067 * 6 4 3 33 33 H 1.09001 * 109.47385 * 180.02562 * 6 4 3 34 34 H 0.96997 * 120.00150 * 0.02562 * 9 7 4 35 35 H 1.09002 * 109.47969 * 303.68058 * 12 10 9 36 36 H 1.08993 * 109.48254 * 63.71973 * 12 10 9 37 37 H 1.09007 * 109.69018 * 185.51667 * 13 12 10 38 38 H 1.09003 * 109.78666 * 64.80969 * 13 12 10 39 39 H 0.97002 * 120.00071 * 5.61070 * 16 15 14 40 40 H 1.09003 * 109.62737 * 68.11500 * 21 14 13 41 41 H 1.08997 * 109.62522 * 188.49300 * 21 14 13 42 42 H 1.09008 * 109.48039 * 56.31311 * 22 10 9 43 43 H 1.08998 * 109.48721 * 296.27421 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4601 0.0006 5 6 3.9968 0.7812 -1.2484 6 6 3.9958 0.7816 1.2501 7 6 3.8195 2.9161 -0.0001 8 8 2.9611 3.7729 -0.0005 9 7 5.1210 3.2662 -0.0002 10 6 5.4988 4.6817 -0.0003 11 1 4.7800 5.2484 -0.5921 12 6 5.5000 5.2077 1.4359 13 6 5.8023 6.7143 1.4254 14 6 7.1007 6.9333 0.6810 15 6 8.1199 7.6746 1.2400 16 7 9.2797 7.7658 0.6267 17 14 7.8535 8.5494 2.8689 18 1 8.2339 7.6456 3.9842 19 1 6.4227 8.9241 3.0014 20 1 8.6923 9.7739 2.9162 21 6 7.2500 6.3234 -0.6953 22 6 6.8930 4.8357 -0.6101 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 5.0834 0.8668 -1.2477 29 1 3.7157 -0.2720 -1.2483 30 1 3.5944 1.2646 -2.1386 31 1 3.5927 1.2652 2.1398 32 1 3.7147 -0.2717 1.2501 33 1 5.0824 0.8680 1.2508 34 1 5.8076 2.5810 -0.0003 35 1 4.5220 5.0376 1.8862 36 1 6.2624 4.6853 2.0138 37 1 5.9014 7.0762 2.4488 38 1 4.9968 7.2487 0.9216 39 1 9.3930 7.3805 -0.2563 40 1 6.5762 6.8222 -1.3919 41 1 8.2790 6.4371 -1.0364 42 1 6.9025 4.4018 -1.6101 43 1 7.6226 4.3221 0.0161 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181153259.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:54 Heat of formation + Delta-G solvation = -128.638684 kcal Electronic energy + Delta-G solvation = -21693.124063 eV Core-core repulsion = 18543.530713 eV Total energy + Delta-G solvation = -3149.593350 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.47320 -39.48851 -38.28026 -35.69588 -34.40996 -32.97132 -31.63213 -31.42815 -28.72516 -28.46734 -25.45328 -24.20674 -23.21658 -22.68924 -21.35144 -20.87063 -18.81667 -18.23937 -17.65726 -16.88254 -16.70333 -16.15994 -15.97693 -15.65144 -15.20382 -14.79632 -14.62502 -14.28379 -14.20582 -13.71435 -13.51193 -13.45560 -13.34170 -13.28118 -12.94197 -12.90503 -12.83469 -12.51376 -12.20073 -12.13061 -12.08906 -11.94223 -11.91043 -11.49158 -11.20590 -10.64104 -10.56556 -10.53302 -10.38191 -9.95364 -8.58801 -6.16797 1.51270 1.56049 1.58531 1.76212 1.84209 2.53968 2.90405 3.15384 3.55310 3.71967 3.87368 3.94021 4.11052 4.17508 4.31901 4.38594 4.41979 4.51447 4.55723 4.60836 4.70753 4.75106 4.78207 4.87460 4.90271 4.92983 5.00431 5.03730 5.09747 5.13163 5.16962 5.20209 5.24481 5.26621 5.46059 5.55396 5.66842 6.03131 6.17684 6.22597 6.59294 6.75937 7.23658 7.51685 8.79179 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.037345 B = 0.004158 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.583174 B = 6733.073599 C = 7039.212018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.042 3.958 3 O -0.392 6.392 4 C 0.100 3.900 5 C -0.172 4.172 6 C -0.173 4.173 7 C 0.516 3.484 8 O -0.578 6.578 9 N -0.705 5.705 10 C 0.168 3.832 11 H 0.049 0.951 12 C -0.106 4.106 13 C -0.011 4.011 14 C -0.575 4.575 15 C -0.013 4.013 16 N -0.941 5.941 17 Si 1.095 2.905 18 H -0.269 1.269 19 H -0.270 1.270 20 H -0.292 1.292 21 C -0.003 4.003 22 C -0.097 4.097 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.098 0.902 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.412 0.588 35 H 0.035 0.965 36 H 0.060 0.940 37 H 0.035 0.965 38 H 0.002 0.998 39 H 0.262 0.738 40 H -0.003 1.003 41 H 0.025 0.975 42 H 0.061 0.939 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.822 -20.511 -0.504 22.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.034 4.034 3 O -0.312 6.312 4 C 0.058 3.942 5 C -0.230 4.230 6 C -0.230 4.230 7 C 0.303 3.697 8 O -0.457 6.457 9 N -0.357 5.357 10 C 0.064 3.936 11 H 0.067 0.933 12 C -0.145 4.145 13 C -0.049 4.049 14 C -0.594 4.594 15 C -0.211 4.211 16 N -0.579 5.579 17 Si 0.919 3.081 18 H -0.194 1.194 19 H -0.195 1.195 20 H -0.218 1.218 21 C -0.042 4.042 22 C -0.135 4.135 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.117 0.883 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.110 0.890 29 H 0.117 0.883 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.118 0.882 33 H 0.109 0.891 34 H 0.250 0.750 35 H 0.053 0.947 36 H 0.079 0.921 37 H 0.054 0.946 38 H 0.020 0.980 39 H 0.074 0.926 40 H 0.015 0.985 41 H 0.044 0.956 42 H 0.080 0.920 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.794 -18.859 0.624 21.260 hybrid contribution -0.262 -0.733 -1.421 1.620 sum -10.056 -19.592 -0.797 22.036 Atomic orbital electron populations 1.21775 0.93318 1.03481 1.02222 1.22855 0.95989 0.82694 1.01849 1.88075 1.19066 1.28694 1.95350 1.21385 0.83261 0.90748 0.98844 1.22428 1.02936 1.02359 0.95251 1.22426 1.02916 1.02358 0.95314 1.20834 0.82559 0.91171 0.75170 1.90686 1.50917 1.53520 1.50567 1.46004 1.06733 1.08661 1.74351 1.20596 0.96107 0.80334 0.96609 0.93286 1.21855 0.98750 0.98040 0.95838 1.19703 0.95665 0.92970 0.96553 1.21527 1.01325 1.33633 1.02934 1.26883 0.91781 0.95647 1.06823 1.70904 1.24502 1.46694 1.15814 0.83203 0.75951 0.76223 0.72675 1.19441 1.19501 1.21821 1.19415 0.96167 0.92824 0.95747 1.21638 0.94339 0.98386 0.99145 0.93007 0.92951 0.88298 0.91243 0.91317 0.88978 0.88272 0.92626 0.92755 0.88229 0.89056 0.75034 0.94659 0.92133 0.94639 0.97981 0.92643 0.98478 0.95620 0.92021 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 10.28 71.98 0.74 -1.63 16 2 C 0.04 0.71 5.86 71.98 0.42 1.13 16 3 O -0.39 -10.72 9.52 -129.94 -1.24 -11.95 16 4 C 0.10 2.36 0.97 -11.54 -0.01 2.35 16 5 C -0.17 -2.83 8.15 71.98 0.59 -2.25 16 6 C -0.17 -2.94 8.15 71.98 0.59 -2.36 16 7 C 0.52 17.20 6.52 87.66 0.57 17.78 16 8 O -0.58 -25.86 16.16 15.99 0.26 -25.60 16 9 N -0.71 -21.35 4.86 -442.66 -2.15 -23.50 16 10 C 0.17 6.55 2.34 44.96 0.11 6.66 16 11 H 0.05 2.22 7.58 -2.39 -0.02 2.20 16 12 C -0.11 -4.46 5.52 30.80 0.17 -4.29 16 13 C -0.01 -0.51 5.58 30.25 0.17 -0.34 16 14 C -0.58 -30.41 5.50 -16.17 -0.09 -30.50 16 15 C -0.01 -0.70 5.46 84.65 0.46 -0.23 16 16 N -0.94 -55.76 13.66 21.44 0.29 -55.47 16 17 Si 1.10 50.00 27.48 68.60 1.88 51.88 16 18 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 19 H -0.27 -11.60 6.71 99.48 0.67 -10.94 16 20 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 21 C 0.00 -0.16 5.96 30.11 0.18 0.02 16 22 C -0.10 -3.78 5.40 30.66 0.17 -3.62 16 23 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.10 0.94 8.14 -2.39 -0.02 0.93 16 26 H 0.07 0.90 6.42 -2.38 -0.02 0.88 16 27 H 0.07 0.90 6.42 -2.39 -0.02 0.89 16 28 H 0.09 1.17 7.56 -2.39 -0.02 1.15 16 29 H 0.10 1.07 6.54 -2.38 -0.02 1.05 16 30 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.10 1.12 6.54 -2.38 -0.02 1.10 16 33 H 0.09 1.23 7.57 -2.39 -0.02 1.21 16 34 H 0.41 9.23 7.44 -92.71 -0.69 8.54 16 35 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.04 1.64 5.01 -2.38 -0.01 1.63 16 38 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 39 H 0.26 15.47 6.36 -92.71 -0.59 14.88 16 40 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 41 H 0.03 1.32 5.79 -2.39 -0.01 1.30 16 42 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 43 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -71.97 331.08 3.55 -68.41 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 0.45 Total: 13.53 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: 4.06 Total: -17.30 kcal Atomic # 7 Polarization: -77.12 SS G_CDS: -1.86 Total: -78.98 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -0.98 Total: -37.56 kcal Atomic # 14 Polarization: 50.00 SS G_CDS: 1.88 Total: 51.88 kcal Total: -71.97 3.55 -68.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181153259.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.224 kcal (2) G-P(sol) polarization free energy of solvation -71.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds