Wall clock time and date at job start Mon Mar 30 2020 00:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47711 * 2 1 4 4 C 1.50697 * 109.47323 * 239.99128 * 2 1 3 5 5 H 1.08002 * 120.00599 * 240.00782 * 4 2 1 6 6 C 1.37880 * 119.99675 * 60.00315 * 4 2 1 7 7 N 1.31517 * 120.00210 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 120.00019 * 0.02562 * 6 4 2 9 9 H 1.48503 * 109.46845 * 269.99914 * 8 6 4 10 10 H 1.48503 * 109.47399 * 29.99403 * 8 6 4 11 11 H 1.48498 * 109.47295 * 150.00010 * 8 6 4 12 12 N 1.46904 * 109.46652 * 119.99575 * 2 1 3 13 13 C 1.46892 * 111.00226 * 274.99776 * 12 2 1 14 14 C 1.52998 * 109.47286 * 179.97438 * 13 12 2 15 15 H 1.08999 * 109.49306 * 305.04385 * 14 13 12 16 16 C 1.53091 * 109.48805 * 185.00075 * 14 13 12 17 17 C 1.53190 * 109.27243 * 181.81997 * 16 14 13 18 18 C 1.53319 * 108.94465 * 57.59941 * 17 16 14 19 19 C 1.52270 * 109.23631 * 304.27787 * 18 17 16 20 20 C 1.54619 * 110.17397 * 178.43871 * 19 18 17 21 21 C 1.55055 * 100.87653 * 151.51500 * 20 19 18 22 22 O 1.43712 * 105.20975 * 324.20817 * 21 20 19 23 23 C 1.43409 * 109.93971 * 24.31155 * 22 21 20 24 24 O 1.41974 * 111.41388 * 55.57102 * 19 18 17 25 25 H 1.08998 * 109.47206 * 300.00454 * 1 2 3 26 26 H 1.09006 * 109.46667 * 60.00472 * 1 2 3 27 27 H 1.09000 * 109.47280 * 180.02562 * 1 2 3 28 28 H 0.96998 * 119.99640 * 180.02562 * 7 6 4 29 29 H 1.00901 * 111.00107 * 151.04199 * 12 2 1 30 30 H 1.09002 * 109.47388 * 300.00494 * 13 12 2 31 31 H 1.09003 * 109.47167 * 60.00638 * 13 12 2 32 32 H 1.09002 * 109.50299 * 301.75554 * 16 14 13 33 33 H 1.09002 * 109.50563 * 61.87950 * 16 14 13 34 34 H 1.09002 * 109.55851 * 177.44250 * 17 16 14 35 35 H 1.09009 * 109.55951 * 297.65844 * 17 16 14 36 36 H 1.09005 * 109.50880 * 64.20556 * 18 17 16 37 37 H 1.08999 * 109.50872 * 184.34182 * 18 17 16 38 38 H 1.09003 * 111.13697 * 269.42009 * 20 19 18 39 39 H 1.09000 * 111.13441 * 33.60952 * 20 19 18 40 40 H 1.09000 * 110.29913 * 205.27546 * 21 20 19 41 41 H 1.09000 * 110.37928 * 83.18313 * 21 20 19 42 42 H 1.08997 * 109.85817 * 238.37480 * 23 22 21 43 43 H 1.08991 * 109.96895 * 117.34915 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6532 -1.5887 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 2.1381 -0.8594 -3.5564 8 14 0.6260 1.2796 -2.6542 9 1 -0.8019 0.8743 -2.6994 10 1 0.8492 2.1772 -1.4924 11 1 0.9773 1.9950 -3.9072 12 7 2.0196 -0.6924 1.1996 13 6 2.0824 0.2226 2.3469 14 6 2.5948 -0.5331 3.5746 15 1 1.9695 -1.4084 3.7500 16 6 2.5426 0.3854 4.7982 17 6 3.0990 -0.3610 6.0148 18 6 4.5297 -0.8181 5.7068 19 6 4.5259 -1.6558 4.4352 20 6 5.9655 -2.0962 4.0825 21 6 5.6897 -3.4259 3.3341 22 8 4.5657 -4.0130 4.0104 23 6 3.8030 -2.9922 4.6683 24 8 3.9453 -0.9482 3.3500 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 1.9041 -0.5278 -4.4374 29 1 2.9172 -1.1206 1.0289 30 1 2.7588 1.0462 2.1182 31 1 1.0870 0.6164 2.5526 32 1 3.1436 1.2753 4.6112 33 1 1.5101 0.6767 4.9909 34 1 3.1062 0.3036 6.8787 35 1 2.4748 -1.2290 6.2273 36 1 5.1682 0.0541 5.5662 37 1 4.9071 -1.4165 6.5360 38 1 6.4495 -1.3704 3.4290 39 1 6.5560 -2.2669 4.9827 40 1 6.5563 -4.0837 3.4000 41 1 5.4429 -3.2300 2.2907 42 1 3.7476 -3.2018 5.7365 43 1 2.7987 -2.9483 4.2472 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195658806.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:12 Heat of formation + Delta-G solvation = -93.144603 kcal Electronic energy + Delta-G solvation = -22018.185743 eV Core-core repulsion = 18870.131531 eV Total energy + Delta-G solvation = -3148.054211 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.72890 -37.88929 -35.98522 -33.82393 -33.19453 -31.96497 -30.26004 -29.16361 -27.40343 -25.43718 -24.66931 -23.13341 -21.98532 -21.37891 -19.82935 -19.30932 -17.24398 -16.83096 -16.33470 -15.80081 -15.38124 -15.08601 -14.79263 -14.27408 -13.99809 -13.72853 -13.59599 -13.30454 -13.03098 -12.77080 -12.65883 -12.17215 -12.10853 -11.94002 -11.62691 -11.45350 -11.30272 -11.23313 -11.15825 -10.83290 -10.67348 -10.45741 -10.14092 -10.02039 -9.49702 -9.46476 -9.28528 -8.97217 -8.57688 -7.44939 -6.06344 -4.05663 3.28536 3.37468 3.40296 3.56357 3.86515 4.29810 4.41062 4.53381 4.58686 4.73333 4.84721 4.89927 5.06198 5.16878 5.26176 5.26334 5.35338 5.39977 5.48154 5.59290 5.64817 5.68664 5.75366 5.77035 5.82524 5.88291 5.89067 5.98098 6.08162 6.17998 6.31677 6.41810 6.56485 6.74675 6.82934 6.96214 7.37159 7.42311 7.61978 7.97755 8.42742 8.66477 8.99601 9.55905 11.06790 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.024149 B = 0.005008 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.208387 B = 5589.215448 C = 6328.099139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.181 3.819 3 H 0.000 1.000 4 C -0.517 4.517 5 H 0.079 0.921 6 C 0.071 3.929 7 N -0.899 5.899 8 Si 0.891 3.109 9 H -0.278 1.278 10 H -0.269 1.269 11 H -0.298 1.298 12 N -0.677 5.677 13 C 0.068 3.932 14 C 0.090 3.910 15 H 0.069 0.931 16 C -0.151 4.151 17 C -0.122 4.122 18 C -0.136 4.136 19 C 0.088 3.912 20 C -0.143 4.143 21 C 0.052 3.948 22 O -0.381 6.381 23 C 0.029 3.971 24 O -0.354 6.354 25 H 0.024 0.976 26 H 0.036 0.964 27 H 0.058 0.942 28 H 0.264 0.736 29 H 0.347 0.653 30 H 0.029 0.971 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.741 0.987 20.519 21.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.072 3.928 3 H 0.017 0.983 4 C -0.555 4.555 5 H 0.097 0.903 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.722 3.278 9 H -0.205 1.205 10 H -0.195 1.195 11 H -0.226 1.226 12 N -0.309 5.309 13 C -0.063 4.063 14 C 0.032 3.968 15 H 0.087 0.913 16 C -0.189 4.189 17 C -0.160 4.160 18 C -0.174 4.174 19 C 0.048 3.952 20 C -0.180 4.180 21 C -0.024 4.024 22 O -0.300 6.300 23 C -0.047 4.047 24 O -0.273 6.273 25 H 0.043 0.957 26 H 0.055 0.945 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.166 0.834 30 H 0.047 0.953 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.113 0.887 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.172 0.558 20.303 20.735 hybrid contribution -0.008 1.590 -0.238 1.608 sum 4.165 2.148 20.065 20.605 Atomic orbital electron populations 1.22075 0.98813 1.01000 0.97598 1.19525 0.91641 0.92959 0.88648 0.98289 1.21113 1.32137 1.13704 0.88575 0.90331 1.24937 0.95746 0.96701 0.95761 1.69897 1.45638 1.40291 0.97888 0.86800 0.80681 0.83627 0.76686 1.20525 1.19462 1.22570 1.60526 1.33610 1.31903 1.04858 1.21943 0.99310 0.94244 0.90754 1.22336 0.83066 0.96655 0.94700 0.91298 1.22198 1.02073 0.99503 0.95133 1.21637 0.95840 1.00456 0.98062 1.21975 0.98014 1.00563 0.96826 1.22274 0.93558 0.91261 0.88141 1.23200 0.94814 0.98282 1.01751 1.23427 0.88859 0.93148 0.97008 1.88432 1.40400 1.31709 1.69485 1.23716 0.96467 0.87172 0.97383 1.87875 1.27704 1.73638 1.38053 0.95695 0.94531 0.92321 0.92632 0.83406 0.95331 0.90551 0.91054 0.90670 0.91380 0.91665 0.90698 0.90754 0.88739 0.89400 0.89875 0.91022 0.90984 0.90438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.90 37.16 0.33 -2.79 16 2 C 0.18 4.41 2.19 -68.86 -0.15 4.26 16 3 H 0.00 -0.01 6.86 -51.93 -0.36 -0.37 16 4 C -0.52 -14.83 9.17 -34.44 -0.32 -15.15 16 5 H 0.08 2.44 7.86 -52.49 -0.41 2.03 16 6 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 7 N -0.90 -27.83 13.96 55.43 0.77 -27.06 16 8 Si 0.89 22.41 24.37 -169.99 -4.14 18.27 16 9 H -0.28 -6.82 6.87 56.52 0.39 -6.43 16 10 H -0.27 -6.53 6.53 56.52 0.37 -6.16 16 11 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 12 N -0.68 -14.34 6.30 -107.96 -0.68 -15.02 16 13 C 0.07 1.16 5.19 -3.83 -0.02 1.14 16 14 C 0.09 1.27 2.65 -26.69 -0.07 1.20 16 15 H 0.07 1.01 6.36 -51.93 -0.33 0.68 16 16 C -0.15 -1.65 5.40 -26.59 -0.14 -1.80 16 17 C -0.12 -1.11 5.85 -26.47 -0.15 -1.27 16 18 C -0.14 -1.28 4.73 -26.94 -0.13 -1.40 16 19 C 0.09 1.05 0.80 -89.77 -0.07 0.98 16 20 C -0.14 -1.53 6.29 -24.79 -0.16 -1.69 16 21 C 0.05 0.64 7.78 38.24 0.30 0.94 16 22 O -0.38 -5.58 11.37 -35.23 -0.40 -5.98 16 23 C 0.03 0.37 6.28 37.53 0.24 0.61 16 24 O -0.35 -5.30 9.44 -35.23 -0.33 -5.63 16 25 H 0.02 0.48 7.45 -51.93 -0.39 0.10 16 26 H 0.04 0.86 3.27 -51.93 -0.17 0.69 16 27 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 29 H 0.35 7.70 7.79 -39.29 -0.31 7.40 16 30 H 0.03 0.51 8.06 -51.93 -0.42 0.09 16 31 H 0.08 1.23 7.44 -51.93 -0.39 0.85 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.57 7.67 -51.92 -0.40 0.17 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.58 8.01 -51.93 -0.42 0.16 16 38 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.09 0.75 8.00 -51.93 -0.42 0.33 16 40 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.07 0.76 7.69 -51.93 -0.40 0.36 16 43 H 0.08 1.07 6.14 -51.93 -0.32 0.75 16 LS Contribution 322.67 15.07 4.86 4.86 Total: -1.00 -31.42 322.67 -7.64 -39.06 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -7.28 Total: 4.50 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: -0.44 Total: -12.99 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 0.09 Total: -42.08 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: -0.73 Total: -11.62 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.14 Total: 18.27 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.42 -7.64 -39.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195658806.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.084 kcal (2) G-P(sol) polarization free energy of solvation -31.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds