Wall clock time and date at job start Mon Mar 30 2020 00:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47711 * 2 1 4 4 C 1.50697 * 109.47323 * 239.99128 * 2 1 3 5 5 H 1.08002 * 120.00599 * 240.00782 * 4 2 1 6 6 C 1.37880 * 119.99675 * 60.00315 * 4 2 1 7 7 N 1.31517 * 120.00210 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 120.00019 * 0.02562 * 6 4 2 9 9 H 1.48503 * 109.46845 * 269.99914 * 8 6 4 10 10 H 1.48503 * 109.47399 * 29.99403 * 8 6 4 11 11 H 1.48498 * 109.47295 * 150.00010 * 8 6 4 12 12 N 1.46904 * 109.46652 * 119.99575 * 2 1 3 13 13 C 1.46892 * 111.00226 * 274.99776 * 12 2 1 14 14 C 1.52998 * 109.47286 * 179.97438 * 13 12 2 15 15 H 1.08999 * 109.49306 * 305.04385 * 14 13 12 16 16 C 1.53091 * 109.48805 * 185.00075 * 14 13 12 17 17 C 1.53190 * 109.27243 * 181.81997 * 16 14 13 18 18 C 1.53319 * 108.94465 * 57.59941 * 17 16 14 19 19 C 1.52270 * 109.23631 * 304.27787 * 18 17 16 20 20 C 1.54619 * 110.17397 * 178.43871 * 19 18 17 21 21 C 1.55055 * 100.87653 * 151.51500 * 20 19 18 22 22 O 1.43712 * 105.20975 * 324.20817 * 21 20 19 23 23 C 1.43409 * 109.93971 * 24.31155 * 22 21 20 24 24 O 1.41974 * 111.41388 * 55.57102 * 19 18 17 25 25 H 1.08998 * 109.47206 * 300.00454 * 1 2 3 26 26 H 1.09006 * 109.46667 * 60.00472 * 1 2 3 27 27 H 1.09000 * 109.47280 * 180.02562 * 1 2 3 28 28 H 0.96998 * 119.99640 * 180.02562 * 7 6 4 29 29 H 1.00901 * 111.00107 * 151.04199 * 12 2 1 30 30 H 1.09002 * 109.47388 * 300.00494 * 13 12 2 31 31 H 1.09003 * 109.47167 * 60.00638 * 13 12 2 32 32 H 1.09002 * 109.50299 * 301.75554 * 16 14 13 33 33 H 1.09002 * 109.50563 * 61.87950 * 16 14 13 34 34 H 1.09002 * 109.55851 * 177.44250 * 17 16 14 35 35 H 1.09009 * 109.55951 * 297.65844 * 17 16 14 36 36 H 1.09005 * 109.50880 * 64.20556 * 18 17 16 37 37 H 1.08999 * 109.50872 * 184.34182 * 18 17 16 38 38 H 1.09003 * 111.13697 * 269.42009 * 20 19 18 39 39 H 1.09000 * 111.13441 * 33.60952 * 20 19 18 40 40 H 1.09000 * 110.29913 * 205.27546 * 21 20 19 41 41 H 1.09000 * 110.37928 * 83.18313 * 21 20 19 42 42 H 1.08997 * 109.85817 * 238.37480 * 23 22 21 43 43 H 1.08991 * 109.96895 * 117.34915 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6532 -1.5887 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 2.1381 -0.8594 -3.5564 8 14 0.6260 1.2796 -2.6542 9 1 -0.8019 0.8743 -2.6994 10 1 0.8492 2.1772 -1.4924 11 1 0.9773 1.9950 -3.9072 12 7 2.0196 -0.6924 1.1996 13 6 2.0824 0.2226 2.3469 14 6 2.5948 -0.5331 3.5746 15 1 1.9695 -1.4084 3.7500 16 6 2.5426 0.3854 4.7982 17 6 3.0990 -0.3610 6.0148 18 6 4.5297 -0.8181 5.7068 19 6 4.5259 -1.6558 4.4352 20 6 5.9655 -2.0962 4.0825 21 6 5.6897 -3.4259 3.3341 22 8 4.5657 -4.0130 4.0104 23 6 3.8030 -2.9922 4.6683 24 8 3.9453 -0.9482 3.3500 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 1.9041 -0.5278 -4.4374 29 1 2.9172 -1.1206 1.0289 30 1 2.7588 1.0462 2.1182 31 1 1.0870 0.6164 2.5526 32 1 3.1436 1.2753 4.6112 33 1 1.5101 0.6767 4.9909 34 1 3.1062 0.3036 6.8787 35 1 2.4748 -1.2290 6.2273 36 1 5.1682 0.0541 5.5662 37 1 4.9071 -1.4165 6.5360 38 1 6.4495 -1.3704 3.4290 39 1 6.5560 -2.2669 4.9827 40 1 6.5563 -4.0837 3.4000 41 1 5.4429 -3.2300 2.2907 42 1 3.7476 -3.2018 5.7365 43 1 2.7987 -2.9483 4.2472 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195658806.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:12 Heat of formation + Delta-G solvation = -116.831998 kcal Electronic energy + Delta-G solvation = -22019.212905 eV Core-core repulsion = 18870.131531 eV Total energy + Delta-G solvation = -3149.081374 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.69394 -39.00955 -37.65402 -34.86122 -34.67003 -33.59118 -31.65813 -30.37971 -28.55445 -27.23442 -26.08181 -24.07918 -23.11399 -22.42566 -21.68111 -20.26462 -18.91173 -18.26354 -17.46435 -17.13498 -16.76801 -16.17072 -15.96333 -15.63243 -15.43082 -15.16660 -14.79078 -14.67665 -14.20646 -14.08768 -13.86470 -13.69839 -13.44780 -13.25021 -12.83427 -12.74853 -12.60667 -12.50641 -12.27602 -12.10512 -12.06335 -11.91397 -11.60020 -11.40978 -11.15875 -10.96305 -10.78165 -10.53923 -10.27153 -9.17643 -8.33163 -6.38333 1.28988 1.33585 1.44728 2.29240 2.58603 2.91076 3.01550 3.34553 3.42816 3.72076 3.82754 3.93252 4.03129 4.11120 4.19468 4.26563 4.31499 4.40689 4.45670 4.50869 4.66638 4.70825 4.72758 4.74458 4.79160 4.85404 4.90571 4.91752 4.96865 5.00516 5.03982 5.08057 5.12451 5.22163 5.39670 5.47793 5.61432 5.96475 5.97044 6.37331 6.47425 6.62744 6.78774 7.28012 8.83736 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.024149 B = 0.005008 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.208387 B = 5589.215448 C = 6328.099139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.185 3.815 3 H -0.005 1.005 4 C -0.527 4.527 5 H 0.033 0.967 6 C 0.012 3.988 7 N -0.947 5.947 8 Si 0.957 3.043 9 H -0.263 1.263 10 H -0.251 1.251 11 H -0.296 1.296 12 N -0.681 5.681 13 C 0.066 3.934 14 C 0.094 3.906 15 H 0.061 0.939 16 C -0.145 4.145 17 C -0.120 4.120 18 C -0.131 4.131 19 C 0.081 3.919 20 C -0.136 4.136 21 C 0.045 3.955 22 O -0.406 6.406 23 C 0.026 3.974 24 O -0.383 6.383 25 H 0.060 0.940 26 H 0.032 0.968 27 H 0.049 0.951 28 H 0.267 0.733 29 H 0.335 0.665 30 H 0.021 0.979 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.119 0.881 40 H 0.106 0.894 41 H 0.041 0.959 42 H 0.099 0.901 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.058 2.749 23.447 23.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.075 3.925 3 H 0.012 0.988 4 C -0.565 4.565 5 H 0.052 0.948 6 C -0.185 4.185 7 N -0.587 5.587 8 Si 0.784 3.216 9 H -0.189 1.189 10 H -0.175 1.175 11 H -0.224 1.224 12 N -0.311 5.311 13 C -0.063 4.063 14 C 0.037 3.963 15 H 0.079 0.921 16 C -0.183 4.183 17 C -0.157 4.157 18 C -0.168 4.168 19 C 0.041 3.959 20 C -0.173 4.173 21 C -0.031 4.031 22 O -0.326 6.326 23 C -0.051 4.051 24 O -0.303 6.303 25 H 0.079 0.921 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.152 0.848 30 H 0.039 0.961 31 H 0.110 0.890 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.117 0.883 38 H 0.108 0.892 39 H 0.137 0.863 40 H 0.124 0.876 41 H 0.059 0.941 42 H 0.117 0.883 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.483 2.321 23.266 23.640 hybrid contribution 0.294 0.923 -1.155 1.507 sum 3.777 3.244 22.112 22.665 Atomic orbital electron populations 1.21973 0.96950 1.01019 0.99107 1.19393 0.93016 0.92025 0.88025 0.98775 1.21396 1.31530 1.12616 0.90973 0.94829 1.25856 0.97266 1.00229 0.95172 1.70051 1.47506 1.42508 0.98633 0.85727 0.79152 0.79511 0.77226 1.18880 1.17462 1.22373 1.60523 1.32908 1.32740 1.04949 1.22092 1.00259 0.93674 0.90303 1.22231 0.82757 0.96753 0.94604 0.92124 1.22153 1.03170 0.98725 0.94256 1.21658 0.95444 1.00871 0.97738 1.21971 0.98528 1.00484 0.95832 1.22528 0.93559 0.91093 0.88703 1.23250 0.94672 0.96756 1.02662 1.23515 0.89032 0.94945 0.95601 1.88398 1.41257 1.33094 1.69821 1.23842 0.95379 0.87392 0.98449 1.87833 1.28017 1.74235 1.40213 0.92110 0.94921 0.93150 0.92381 0.84751 0.96060 0.89015 0.91221 0.89297 0.89027 0.91250 0.90419 0.88342 0.89165 0.86273 0.87616 0.94085 0.88326 0.92417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.79 8.90 71.98 0.64 -5.15 16 2 C 0.18 9.00 2.19 44.17 0.10 9.10 16 3 H -0.01 -0.26 6.86 -2.39 -0.02 -0.28 16 4 C -0.53 -31.31 9.17 25.60 0.23 -31.07 16 5 H 0.03 2.23 7.86 -2.91 -0.02 2.21 16 6 C 0.01 0.74 5.45 84.65 0.46 1.20 16 7 N -0.95 -60.54 13.96 21.45 0.30 -60.24 16 8 Si 0.96 45.89 24.37 68.60 1.67 47.57 16 9 H -0.26 -11.92 6.87 99.48 0.68 -11.24 16 10 H -0.25 -11.18 6.53 99.48 0.65 -10.53 16 11 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 12 N -0.68 -29.27 6.30 -495.47 -3.12 -32.40 16 13 C 0.07 2.21 5.19 86.30 0.45 2.65 16 14 C 0.09 2.57 2.65 30.62 0.08 2.65 16 15 H 0.06 1.75 6.36 -2.39 -0.02 1.74 16 16 C -0.14 -2.79 5.40 30.69 0.17 -2.63 16 17 C -0.12 -1.75 5.85 30.76 0.18 -1.57 16 18 C -0.13 -2.01 4.73 30.46 0.14 -1.87 16 19 C 0.08 1.82 0.80 -10.24 -0.01 1.81 16 20 C -0.14 -2.74 6.29 31.85 0.20 -2.54 16 21 C 0.05 1.13 7.78 72.69 0.57 1.70 16 22 O -0.41 -11.91 11.37 -148.98 -1.69 -13.61 16 23 C 0.03 0.63 6.28 72.22 0.45 1.08 16 24 O -0.38 -11.46 9.44 -148.97 -1.41 -12.87 16 25 H 0.06 2.19 7.45 -2.39 -0.02 2.18 16 26 H 0.03 1.44 3.27 -2.38 -0.01 1.43 16 27 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 29 H 0.34 15.68 7.79 -89.69 -0.70 14.98 16 30 H 0.02 0.74 8.06 -2.39 -0.02 0.72 16 31 H 0.09 2.75 7.44 -2.39 -0.02 2.73 16 32 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.07 0.98 7.67 -2.38 -0.02 0.96 16 36 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.10 1.08 8.01 -2.39 -0.02 1.06 16 38 H 0.09 1.89 8.14 -2.39 -0.02 1.88 16 39 H 0.12 1.65 8.00 -2.39 -0.02 1.63 16 40 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.10 1.83 7.69 -2.39 -0.02 1.81 16 43 H 0.06 1.61 6.14 -2.39 -0.01 1.60 16 Total: -1.00 -70.62 322.67 -0.38 -71.00 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: 0.21 Total: 25.18 kcal Atomic # 6 Polarization: -28.30 SS G_CDS: 3.66 Total: -24.64 kcal Atomic # 7 Polarization: -89.81 SS G_CDS: -2.82 Total: -92.64 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -3.10 Total: -26.47 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.67 Total: 47.57 kcal Total: -70.62 -0.38 -71.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195658806.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.833 kcal (2) G-P(sol) polarization free energy of solvation -70.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds