Wall clock time and date at job start Mon Mar 30 2020 00:44:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08997 * 109.47337 * 2 1
4 4 C 1.50705 * 109.47021 * 240.00229 * 2 1 3
5 5 H 1.08005 * 119.99772 * 275.00507 * 4 2 1
6 6 C 1.37874 * 120.00126 * 95.00117 * 4 2 1
7 7 N 1.31521 * 119.99916 * 184.91465 * 6 4 2
8 8 Si 1.86798 * 120.00198 * 4.91353 * 6 4 2
9 9 H 1.48501 * 109.46836 * 84.82853 * 8 6 4
10 10 H 1.48501 * 109.47348 * 204.83057 * 8 6 4
11 11 H 1.48495 * 109.46942 * 324.83227 * 8 6 4
12 12 N 1.46893 * 109.47223 * 120.00419 * 2 1 3
13 13 C 1.46905 * 110.99780 * 274.99474 * 12 2 1
14 14 C 1.52996 * 109.47037 * 179.97438 * 13 12 2
15 15 H 1.09003 * 109.49384 * 60.05180 * 14 13 12
16 16 C 1.53095 * 109.49095 * 180.11985 * 14 13 12
17 17 C 1.53191 * 109.28221 * 178.21195 * 16 14 13
18 18 C 1.53318 * 108.93151 * 302.37778 * 17 16 14
19 19 C 1.52273 * 109.25465 * 55.69448 * 18 17 16
20 20 C 1.54641 * 110.15575 * 67.31295 * 19 18 17
21 21 C 1.55064 * 100.87620 * 151.57116 * 20 19 18
22 22 O 1.43702 * 105.20393 * 324.19268 * 21 20 19
23 23 C 1.43419 * 109.93760 * 24.29990 * 22 21 20
24 24 O 1.41971 * 111.42931 * 304.48858 * 19 18 17
25 25 H 1.08999 * 109.47033 * 295.05401 * 1 2 3
26 26 H 1.09000 * 109.46823 * 55.05055 * 1 2 3
27 27 H 1.08996 * 109.47052 * 175.05025 * 1 2 3
28 28 H 0.96999 * 119.99845 * 180.02562 * 7 6 4
29 29 H 1.00903 * 111.00051 * 151.04640 * 12 2 1
30 30 H 1.08997 * 109.47243 * 300.00223 * 13 12 2
31 31 H 1.09003 * 109.46812 * 60.00069 * 13 12 2
32 32 H 1.09008 * 109.50341 * 298.15386 * 16 14 13
33 33 H 1.08999 * 109.50489 * 58.26907 * 16 14 13
34 34 H 1.08994 * 109.55945 * 182.54568 * 17 16 14
35 35 H 1.08998 * 109.65239 * 62.26346 * 17 16 14
36 36 H 1.09006 * 109.50784 * 295.76330 * 18 17 16
37 37 H 1.08994 * 109.51178 * 175.63199 * 18 17 16
38 38 H 1.08997 * 111.13726 * 269.47618 * 20 19 18
39 39 H 1.09005 * 111.13482 * 33.66731 * 20 19 18
40 40 H 1.09004 * 110.29222 * 205.25742 * 21 20 19
41 41 H 1.09001 * 110.38085 * 83.16679 * 21 20 19
42 42 H 1.09001 * 109.85913 * 238.39364 * 23 22 21
43 43 H 1.09001 * 109.85593 * 117.31673 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0323 -0.7104 -1.2305
5 1 2.1354 -1.7855 -1.2291
6 6 2.3602 0.0121 -2.3581
7 7 2.7059 -0.6132 -3.4623
8 14 2.3135 1.8791 -2.3175
9 1 3.5991 2.3948 -1.7821
10 1 2.1058 2.3991 -3.6929
11 1 1.1986 2.3274 -1.4451
12 7 2.0197 -0.6925 1.1993
13 6 2.0826 0.2226 2.3468
14 6 2.5951 -0.5332 3.5743
15 1 3.5908 -0.9268 3.3696
16 6 2.6580 0.4193 4.7712
17 6 3.1291 -0.3526 6.0078
18 6 2.1689 -1.5209 6.2605
19 6 2.0850 -2.3819 5.0074
20 6 3.4382 -3.0859 4.7530
21 6 2.9680 -4.3651 4.0133
22 8 1.7188 -4.7190 4.6292
23 6 1.1187 -3.5581 5.2200
24 8 1.7073 -1.6139 3.8747
25 1 -0.3633 0.4352 0.9310
26 1 -0.3633 0.5887 -0.8423
27 1 -0.3633 -1.0238 -0.0887
28 1 2.9370 -0.1048 -4.2555
29 1 2.9173 -1.1205 1.0286
30 1 2.7589 1.0461 2.1181
31 1 1.0872 0.6163 2.5525
32 1 3.3586 1.2266 4.5574
33 1 1.6681 0.8356 4.9574
34 1 3.1322 0.3107 6.8727
35 1 4.1349 -0.7369 5.8389
36 1 1.1794 -1.1330 6.5025
37 1 2.5380 -2.1222 7.0913
38 1 4.0836 -2.4793 4.1178
39 1 3.9345 -3.3343 5.6912
40 1 3.6950 -5.1666 4.1448
41 1 2.8217 -4.1584 2.9531
42 1 0.9649 -3.7229 6.2865
43 1 0.1657 -3.3466 4.7351
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001195658808.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:44:14
Heat of formation + Delta-G solvation = -98.882265 kcal
Electronic energy + Delta-G solvation = -22031.950088 eV
Core-core repulsion = 18883.647073 eV
Total energy + Delta-G solvation = -3148.303015 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 269.178 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-40.67516 -37.88292 -35.92825 -33.73991 -33.02877 -31.86060 -30.28445 -29.33568
-27.22328 -25.42280 -24.71286 -22.82769 -22.17728 -21.35228 -19.69309 -19.26470
-17.12091 -17.02474 -16.24415 -16.02729 -15.01133 -14.91620 -14.68233 -14.67540
-13.88060 -13.66381 -13.56383 -13.21959 -12.89695 -12.72719 -12.48748 -12.22444
-12.05980 -11.80848 -11.65465 -11.60087 -11.11282 -11.08269 -11.00481 -10.81321
-10.63113 -10.48249 -10.34650 -9.96480 -9.74361 -9.49014 -9.25550 -8.97222
-8.59113 -7.34089 -6.10835 -4.11026 3.23368 3.32982 3.35240 3.61405
3.89572 4.31219 4.37729 4.58014 4.60021 4.74518 4.85794 5.02439
5.06342 5.15549 5.22006 5.25845 5.37475 5.43917 5.50657 5.62473
5.67052 5.71465 5.76709 5.78970 5.86086 5.87613 5.92618 5.99917
6.09389 6.15751 6.31862 6.47486 6.72073 6.88027 6.93010 6.96671
7.45538 7.47884 7.65929 8.00165 8.43372 8.68749 8.99608 9.53509
11.02335
Molecular weight = 269.18amu
Principal moments of inertia in cm(-1)
A = 0.024244 B = 0.005012 C = 0.004548
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1154.647773 B = 5585.034895 C = 6155.653832
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C 0.180 3.820
3 H 0.001 0.999
4 C -0.516 4.516
5 H 0.080 0.920
6 C 0.073 3.927
7 N -0.897 5.897
8 Si 0.875 3.125
9 H -0.279 1.279
10 H -0.288 1.288
11 H -0.265 1.265
12 N -0.673 5.673
13 C 0.065 3.935
14 C 0.094 3.906
15 H 0.057 0.943
16 C -0.152 4.152
17 C -0.119 4.119
18 C -0.137 4.137
19 C 0.084 3.916
20 C -0.182 4.182
21 C 0.056 3.944
22 O -0.384 6.384
23 C 0.068 3.932
24 O -0.333 6.333
25 H 0.020 0.980
26 H 0.038 0.962
27 H 0.052 0.948
28 H 0.264 0.736
29 H 0.337 0.663
30 H 0.033 0.967
31 H 0.071 0.929
32 H 0.072 0.928
33 H 0.072 0.928
34 H 0.066 0.934
35 H 0.064 0.936
36 H 0.073 0.927
37 H 0.073 0.927
38 H 0.089 0.911
39 H 0.080 0.920
40 H 0.081 0.919
41 H 0.073 0.927
42 H 0.078 0.922
43 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.758 -0.120 20.726 20.800
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.182 4.182
2 C 0.072 3.928
3 H 0.019 0.981
4 C -0.555 4.555
5 H 0.098 0.902
6 C -0.130 4.130
7 N -0.535 5.535
8 Si 0.703 3.297
9 H -0.205 1.205
10 H -0.214 1.214
11 H -0.190 1.190
12 N -0.305 5.305
13 C -0.065 4.065
14 C 0.037 3.963
15 H 0.075 0.925
16 C -0.190 4.190
17 C -0.157 4.157
18 C -0.175 4.175
19 C 0.044 3.956
20 C -0.220 4.220
21 C -0.020 4.020
22 O -0.303 6.303
23 C -0.008 4.008
24 O -0.252 6.252
25 H 0.039 0.961
26 H 0.057 0.943
27 H 0.071 0.929
28 H 0.074 0.926
29 H 0.155 0.845
30 H 0.050 0.950
31 H 0.089 0.911
32 H 0.091 0.909
33 H 0.091 0.909
34 H 0.085 0.915
35 H 0.082 0.918
36 H 0.092 0.908
37 H 0.091 0.909
38 H 0.107 0.893
39 H 0.099 0.901
40 H 0.099 0.901
41 H 0.091 0.909
42 H 0.096 0.904
43 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges 0.930 -0.584 20.569 20.598
hybrid contribution 1.172 1.954 -0.218 2.289
sum 2.102 1.370 20.351 20.505
Atomic orbital electron populations
1.21817 0.98062 1.00748 0.97548 1.19565 0.92535 0.92233 0.88466
0.98141 1.21096 1.43397 0.95937 0.95055 0.90211 1.25032 0.94492
0.98108 0.95348 1.69908 1.46173 1.35736 1.01638 0.86893 0.78873
0.86712 0.77227 1.20451 1.21404 1.19019 1.60606 1.32820 1.32315
1.04729 1.21983 1.00461 0.93650 0.90444 1.22250 0.93415 0.86844
0.93839 0.92527 1.22214 1.02573 0.98835 0.95417 1.21594 0.98953
0.96985 0.98127 1.21969 1.00920 0.97473 0.97089 1.22315 0.93767
0.91870 0.87683 1.23793 0.98367 0.98110 1.01746 1.23368 0.85098
0.95787 0.97768 1.88415 1.35973 1.31535 1.74375 1.22995 0.96778
0.82992 0.98052 1.88033 1.49522 1.42900 1.44745 0.96114 0.94271
0.92924 0.92608 0.84472 0.94955 0.91103 0.90926 0.90912 0.91527
0.91770 0.90842 0.90868 0.89284 0.90102 0.90091 0.90899 0.90380
0.90106
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.80 9.42 37.16 0.35 -2.45 16
2 C 0.18 4.31 2.26 -68.87 -0.16 4.15 16
3 H 0.00 0.02 4.95 -51.93 -0.26 -0.23 16
4 C -0.52 -14.47 8.84 -34.44 -0.30 -14.78 16
5 H 0.08 2.46 8.06 -52.48 -0.42 2.04 16
6 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16
7 N -0.90 -27.25 13.96 55.43 0.77 -26.47 16
8 Si 0.88 21.47 26.99 -169.99 -4.59 16.89 16
9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16
10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16
11 H -0.27 -6.30 6.82 56.52 0.39 -5.92 16
12 N -0.67 -14.05 6.17 -107.95 -0.67 -14.72 16
13 C 0.06 1.10 5.18 -3.82 -0.02 1.08 16
14 C 0.09 1.32 2.63 -26.68 -0.07 1.25 16
15 H 0.06 0.78 6.26 -51.93 -0.33 0.45 16
16 C -0.15 -1.68 5.40 -26.58 -0.14 -1.82 16
17 C -0.12 -1.09 5.84 -26.47 -0.15 -1.25 16
18 C -0.14 -1.30 4.72 -26.94 -0.13 -1.43 16
19 C 0.08 1.02 0.84 -89.77 -0.07 0.94 16
20 C -0.18 -2.03 5.32 -24.78 -0.13 -2.16 16
21 C 0.06 0.72 7.78 38.25 0.30 1.01 16
22 O -0.38 -5.57 11.37 -35.23 -0.40 -5.97 16
23 C 0.07 0.85 7.18 37.52 0.27 1.12 16
24 O -0.33 -5.11 9.74 -35.23 -0.34 -5.46 16
25 H 0.02 0.41 7.35 -51.93 -0.38 0.03 16
26 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16
27 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16
28 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16
29 H 0.34 7.08 8.35 -39.29 -0.33 6.75 16
30 H 0.03 0.54 8.05 -51.93 -0.42 0.12 16
31 H 0.07 1.23 7.36 -51.93 -0.38 0.85 16
32 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16
33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16
34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
35 H 0.06 0.57 7.61 -51.93 -0.40 0.17 16
36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16
37 H 0.07 0.58 8.04 -51.93 -0.42 0.16 16
38 H 0.09 1.01 6.10 -51.93 -0.32 0.69 16
39 H 0.08 0.75 7.93 -51.93 -0.41 0.34 16
40 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16
41 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16
42 H 0.08 0.78 7.78 -51.93 -0.40 0.37 16
43 H 0.08 1.09 8.06 -51.93 -0.42 0.67 16
LS Contribution 329.51 15.07 4.97 4.97
Total: -1.00 -30.86 329.51 -8.03 -38.90
By element:
Atomic # 1 Polarization: 11.62 SS G_CDS: -7.41 Total: 4.21 kcal
Atomic # 6 Polarization: -11.98 SS G_CDS: -0.36 Total: -12.34 kcal
Atomic # 7 Polarization: -41.30 SS G_CDS: 0.11 Total: -41.19 kcal
Atomic # 8 Polarization: -10.68 SS G_CDS: -0.74 Total: -11.43 kcal
Atomic # 14 Polarization: 21.47 SS G_CDS: -4.59 Total: 16.89 kcal
Total LS contribution 4.97 Total: 4.97 kcal
Total: -30.86 -8.03 -38.90 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001195658808.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -59.986 kcal
(2) G-P(sol) polarization free energy of solvation -30.862 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.848 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.897 kcal
(6) G-S(sol) free energy of system = (1) + (5) -98.882 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds