Wall clock time and date at job start Mon Mar 30 2020 00:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47337 * 2 1 4 4 C 1.50705 * 109.47021 * 240.00229 * 2 1 3 5 5 H 1.08005 * 119.99772 * 275.00507 * 4 2 1 6 6 C 1.37874 * 120.00126 * 95.00117 * 4 2 1 7 7 N 1.31521 * 119.99916 * 184.91465 * 6 4 2 8 8 Si 1.86798 * 120.00198 * 4.91353 * 6 4 2 9 9 H 1.48501 * 109.46836 * 84.82853 * 8 6 4 10 10 H 1.48501 * 109.47348 * 204.83057 * 8 6 4 11 11 H 1.48495 * 109.46942 * 324.83227 * 8 6 4 12 12 N 1.46893 * 109.47223 * 120.00419 * 2 1 3 13 13 C 1.46905 * 110.99780 * 274.99474 * 12 2 1 14 14 C 1.52996 * 109.47037 * 179.97438 * 13 12 2 15 15 H 1.09003 * 109.49384 * 60.05180 * 14 13 12 16 16 C 1.53095 * 109.49095 * 180.11985 * 14 13 12 17 17 C 1.53191 * 109.28221 * 178.21195 * 16 14 13 18 18 C 1.53318 * 108.93151 * 302.37778 * 17 16 14 19 19 C 1.52273 * 109.25465 * 55.69448 * 18 17 16 20 20 C 1.54641 * 110.15575 * 67.31295 * 19 18 17 21 21 C 1.55064 * 100.87620 * 151.57116 * 20 19 18 22 22 O 1.43702 * 105.20393 * 324.19268 * 21 20 19 23 23 C 1.43419 * 109.93760 * 24.29990 * 22 21 20 24 24 O 1.41971 * 111.42931 * 304.48858 * 19 18 17 25 25 H 1.08999 * 109.47033 * 295.05401 * 1 2 3 26 26 H 1.09000 * 109.46823 * 55.05055 * 1 2 3 27 27 H 1.08996 * 109.47052 * 175.05025 * 1 2 3 28 28 H 0.96999 * 119.99845 * 180.02562 * 7 6 4 29 29 H 1.00903 * 111.00051 * 151.04640 * 12 2 1 30 30 H 1.08997 * 109.47243 * 300.00223 * 13 12 2 31 31 H 1.09003 * 109.46812 * 60.00069 * 13 12 2 32 32 H 1.09008 * 109.50341 * 298.15386 * 16 14 13 33 33 H 1.08999 * 109.50489 * 58.26907 * 16 14 13 34 34 H 1.08994 * 109.55945 * 182.54568 * 17 16 14 35 35 H 1.08998 * 109.65239 * 62.26346 * 17 16 14 36 36 H 1.09006 * 109.50784 * 295.76330 * 18 17 16 37 37 H 1.08994 * 109.51178 * 175.63199 * 18 17 16 38 38 H 1.08997 * 111.13726 * 269.47618 * 20 19 18 39 39 H 1.09005 * 111.13482 * 33.66731 * 20 19 18 40 40 H 1.09004 * 110.29222 * 205.25742 * 21 20 19 41 41 H 1.09001 * 110.38085 * 83.16679 * 21 20 19 42 42 H 1.09001 * 109.85913 * 238.39364 * 23 22 21 43 43 H 1.09001 * 109.85593 * 117.31673 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1354 -1.7855 -1.2291 6 6 2.3602 0.0121 -2.3581 7 7 2.7059 -0.6132 -3.4623 8 14 2.3135 1.8791 -2.3175 9 1 3.5991 2.3948 -1.7821 10 1 2.1058 2.3991 -3.6929 11 1 1.1986 2.3274 -1.4451 12 7 2.0197 -0.6925 1.1993 13 6 2.0826 0.2226 2.3468 14 6 2.5951 -0.5332 3.5743 15 1 3.5908 -0.9268 3.3696 16 6 2.6580 0.4193 4.7712 17 6 3.1291 -0.3526 6.0078 18 6 2.1689 -1.5209 6.2605 19 6 2.0850 -2.3819 5.0074 20 6 3.4382 -3.0859 4.7530 21 6 2.9680 -4.3651 4.0133 22 8 1.7188 -4.7190 4.6292 23 6 1.1187 -3.5581 5.2200 24 8 1.7073 -1.6139 3.8747 25 1 -0.3633 0.4352 0.9310 26 1 -0.3633 0.5887 -0.8423 27 1 -0.3633 -1.0238 -0.0887 28 1 2.9370 -0.1048 -4.2555 29 1 2.9173 -1.1205 1.0286 30 1 2.7589 1.0461 2.1181 31 1 1.0872 0.6163 2.5525 32 1 3.3586 1.2266 4.5574 33 1 1.6681 0.8356 4.9574 34 1 3.1322 0.3107 6.8727 35 1 4.1349 -0.7369 5.8389 36 1 1.1794 -1.1330 6.5025 37 1 2.5380 -2.1222 7.0913 38 1 4.0836 -2.4793 4.1178 39 1 3.9345 -3.3343 5.6912 40 1 3.6950 -5.1666 4.1448 41 1 2.8217 -4.1584 2.9531 42 1 0.9649 -3.7229 6.2865 43 1 0.1657 -3.3466 4.7351 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195658808.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:14 Heat of formation + Delta-G solvation = -98.882265 kcal Electronic energy + Delta-G solvation = -22031.950088 eV Core-core repulsion = 18883.647073 eV Total energy + Delta-G solvation = -3148.303015 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.67516 -37.88292 -35.92825 -33.73991 -33.02877 -31.86060 -30.28445 -29.33568 -27.22328 -25.42280 -24.71286 -22.82769 -22.17728 -21.35228 -19.69309 -19.26470 -17.12091 -17.02474 -16.24415 -16.02729 -15.01133 -14.91620 -14.68233 -14.67540 -13.88060 -13.66381 -13.56383 -13.21959 -12.89695 -12.72719 -12.48748 -12.22444 -12.05980 -11.80848 -11.65465 -11.60087 -11.11282 -11.08269 -11.00481 -10.81321 -10.63113 -10.48249 -10.34650 -9.96480 -9.74361 -9.49014 -9.25550 -8.97222 -8.59113 -7.34089 -6.10835 -4.11026 3.23368 3.32982 3.35240 3.61405 3.89572 4.31219 4.37729 4.58014 4.60021 4.74518 4.85794 5.02439 5.06342 5.15549 5.22006 5.25845 5.37475 5.43917 5.50657 5.62473 5.67052 5.71465 5.76709 5.78970 5.86086 5.87613 5.92618 5.99917 6.09389 6.15751 6.31862 6.47486 6.72073 6.88027 6.93010 6.96671 7.45538 7.47884 7.65929 8.00165 8.43372 8.68749 8.99608 9.53509 11.02335 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.024244 B = 0.005012 C = 0.004548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.647773 B = 5585.034895 C = 6155.653832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.180 3.820 3 H 0.001 0.999 4 C -0.516 4.516 5 H 0.080 0.920 6 C 0.073 3.927 7 N -0.897 5.897 8 Si 0.875 3.125 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.265 1.265 12 N -0.673 5.673 13 C 0.065 3.935 14 C 0.094 3.906 15 H 0.057 0.943 16 C -0.152 4.152 17 C -0.119 4.119 18 C -0.137 4.137 19 C 0.084 3.916 20 C -0.182 4.182 21 C 0.056 3.944 22 O -0.384 6.384 23 C 0.068 3.932 24 O -0.333 6.333 25 H 0.020 0.980 26 H 0.038 0.962 27 H 0.052 0.948 28 H 0.264 0.736 29 H 0.337 0.663 30 H 0.033 0.967 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.758 -0.120 20.726 20.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.072 3.928 3 H 0.019 0.981 4 C -0.555 4.555 5 H 0.098 0.902 6 C -0.130 4.130 7 N -0.535 5.535 8 Si 0.703 3.297 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.190 1.190 12 N -0.305 5.305 13 C -0.065 4.065 14 C 0.037 3.963 15 H 0.075 0.925 16 C -0.190 4.190 17 C -0.157 4.157 18 C -0.175 4.175 19 C 0.044 3.956 20 C -0.220 4.220 21 C -0.020 4.020 22 O -0.303 6.303 23 C -0.008 4.008 24 O -0.252 6.252 25 H 0.039 0.961 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.155 0.845 30 H 0.050 0.950 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.930 -0.584 20.569 20.598 hybrid contribution 1.172 1.954 -0.218 2.289 sum 2.102 1.370 20.351 20.505 Atomic orbital electron populations 1.21817 0.98062 1.00748 0.97548 1.19565 0.92535 0.92233 0.88466 0.98141 1.21096 1.43397 0.95937 0.95055 0.90211 1.25032 0.94492 0.98108 0.95348 1.69908 1.46173 1.35736 1.01638 0.86893 0.78873 0.86712 0.77227 1.20451 1.21404 1.19019 1.60606 1.32820 1.32315 1.04729 1.21983 1.00461 0.93650 0.90444 1.22250 0.93415 0.86844 0.93839 0.92527 1.22214 1.02573 0.98835 0.95417 1.21594 0.98953 0.96985 0.98127 1.21969 1.00920 0.97473 0.97089 1.22315 0.93767 0.91870 0.87683 1.23793 0.98367 0.98110 1.01746 1.23368 0.85098 0.95787 0.97768 1.88415 1.35973 1.31535 1.74375 1.22995 0.96778 0.82992 0.98052 1.88033 1.49522 1.42900 1.44745 0.96114 0.94271 0.92924 0.92608 0.84472 0.94955 0.91103 0.90926 0.90912 0.91527 0.91770 0.90842 0.90868 0.89284 0.90102 0.90091 0.90899 0.90380 0.90106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.80 9.42 37.16 0.35 -2.45 16 2 C 0.18 4.31 2.26 -68.87 -0.16 4.15 16 3 H 0.00 0.02 4.95 -51.93 -0.26 -0.23 16 4 C -0.52 -14.47 8.84 -34.44 -0.30 -14.78 16 5 H 0.08 2.46 8.06 -52.48 -0.42 2.04 16 6 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 7 N -0.90 -27.25 13.96 55.43 0.77 -26.47 16 8 Si 0.88 21.47 26.99 -169.99 -4.59 16.89 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.27 -6.30 6.82 56.52 0.39 -5.92 16 12 N -0.67 -14.05 6.17 -107.95 -0.67 -14.72 16 13 C 0.06 1.10 5.18 -3.82 -0.02 1.08 16 14 C 0.09 1.32 2.63 -26.68 -0.07 1.25 16 15 H 0.06 0.78 6.26 -51.93 -0.33 0.45 16 16 C -0.15 -1.68 5.40 -26.58 -0.14 -1.82 16 17 C -0.12 -1.09 5.84 -26.47 -0.15 -1.25 16 18 C -0.14 -1.30 4.72 -26.94 -0.13 -1.43 16 19 C 0.08 1.02 0.84 -89.77 -0.07 0.94 16 20 C -0.18 -2.03 5.32 -24.78 -0.13 -2.16 16 21 C 0.06 0.72 7.78 38.25 0.30 1.01 16 22 O -0.38 -5.57 11.37 -35.23 -0.40 -5.97 16 23 C 0.07 0.85 7.18 37.52 0.27 1.12 16 24 O -0.33 -5.11 9.74 -35.23 -0.34 -5.46 16 25 H 0.02 0.41 7.35 -51.93 -0.38 0.03 16 26 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 29 H 0.34 7.08 8.35 -39.29 -0.33 6.75 16 30 H 0.03 0.54 8.05 -51.93 -0.42 0.12 16 31 H 0.07 1.23 7.36 -51.93 -0.38 0.85 16 32 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.57 7.61 -51.93 -0.40 0.17 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.58 8.04 -51.93 -0.42 0.16 16 38 H 0.09 1.01 6.10 -51.93 -0.32 0.69 16 39 H 0.08 0.75 7.93 -51.93 -0.41 0.34 16 40 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.08 0.78 7.78 -51.93 -0.40 0.37 16 43 H 0.08 1.09 8.06 -51.93 -0.42 0.67 16 LS Contribution 329.51 15.07 4.97 4.97 Total: -1.00 -30.86 329.51 -8.03 -38.90 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -7.41 Total: 4.21 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: -0.36 Total: -12.34 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.11 Total: -41.19 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: -0.74 Total: -11.43 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.59 Total: 16.89 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.86 -8.03 -38.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195658808.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.986 kcal (2) G-P(sol) polarization free energy of solvation -30.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds