Wall clock time and date at job start Mon Mar 30 2020 00:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47337 * 2 1 4 4 C 1.50705 * 109.47021 * 240.00229 * 2 1 3 5 5 H 1.08005 * 119.99772 * 275.00507 * 4 2 1 6 6 C 1.37874 * 120.00126 * 95.00117 * 4 2 1 7 7 N 1.31521 * 119.99916 * 184.91465 * 6 4 2 8 8 Si 1.86798 * 120.00198 * 4.91353 * 6 4 2 9 9 H 1.48501 * 109.46836 * 84.82853 * 8 6 4 10 10 H 1.48501 * 109.47348 * 204.83057 * 8 6 4 11 11 H 1.48495 * 109.46942 * 324.83227 * 8 6 4 12 12 N 1.46893 * 109.47223 * 120.00419 * 2 1 3 13 13 C 1.46905 * 110.99780 * 274.99474 * 12 2 1 14 14 C 1.52996 * 109.47037 * 179.97438 * 13 12 2 15 15 H 1.09003 * 109.49384 * 60.05180 * 14 13 12 16 16 C 1.53095 * 109.49095 * 180.11985 * 14 13 12 17 17 C 1.53191 * 109.28221 * 178.21195 * 16 14 13 18 18 C 1.53318 * 108.93151 * 302.37778 * 17 16 14 19 19 C 1.52273 * 109.25465 * 55.69448 * 18 17 16 20 20 C 1.54641 * 110.15575 * 67.31295 * 19 18 17 21 21 C 1.55064 * 100.87620 * 151.57116 * 20 19 18 22 22 O 1.43702 * 105.20393 * 324.19268 * 21 20 19 23 23 C 1.43419 * 109.93760 * 24.29990 * 22 21 20 24 24 O 1.41971 * 111.42931 * 304.48858 * 19 18 17 25 25 H 1.08999 * 109.47033 * 295.05401 * 1 2 3 26 26 H 1.09000 * 109.46823 * 55.05055 * 1 2 3 27 27 H 1.08996 * 109.47052 * 175.05025 * 1 2 3 28 28 H 0.96999 * 119.99845 * 180.02562 * 7 6 4 29 29 H 1.00903 * 111.00051 * 151.04640 * 12 2 1 30 30 H 1.08997 * 109.47243 * 300.00223 * 13 12 2 31 31 H 1.09003 * 109.46812 * 60.00069 * 13 12 2 32 32 H 1.09008 * 109.50341 * 298.15386 * 16 14 13 33 33 H 1.08999 * 109.50489 * 58.26907 * 16 14 13 34 34 H 1.08994 * 109.55945 * 182.54568 * 17 16 14 35 35 H 1.08998 * 109.65239 * 62.26346 * 17 16 14 36 36 H 1.09006 * 109.50784 * 295.76330 * 18 17 16 37 37 H 1.08994 * 109.51178 * 175.63199 * 18 17 16 38 38 H 1.08997 * 111.13726 * 269.47618 * 20 19 18 39 39 H 1.09005 * 111.13482 * 33.66731 * 20 19 18 40 40 H 1.09004 * 110.29222 * 205.25742 * 21 20 19 41 41 H 1.09001 * 110.38085 * 83.16679 * 21 20 19 42 42 H 1.09001 * 109.85913 * 238.39364 * 23 22 21 43 43 H 1.09001 * 109.85593 * 117.31673 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1354 -1.7855 -1.2291 6 6 2.3602 0.0121 -2.3581 7 7 2.7059 -0.6132 -3.4623 8 14 2.3135 1.8791 -2.3175 9 1 3.5991 2.3948 -1.7821 10 1 2.1058 2.3991 -3.6929 11 1 1.1986 2.3274 -1.4451 12 7 2.0197 -0.6925 1.1993 13 6 2.0826 0.2226 2.3468 14 6 2.5951 -0.5332 3.5743 15 1 3.5908 -0.9268 3.3696 16 6 2.6580 0.4193 4.7712 17 6 3.1291 -0.3526 6.0078 18 6 2.1689 -1.5209 6.2605 19 6 2.0850 -2.3819 5.0074 20 6 3.4382 -3.0859 4.7530 21 6 2.9680 -4.3651 4.0133 22 8 1.7188 -4.7190 4.6292 23 6 1.1187 -3.5581 5.2200 24 8 1.7073 -1.6139 3.8747 25 1 -0.3633 0.4352 0.9310 26 1 -0.3633 0.5887 -0.8423 27 1 -0.3633 -1.0238 -0.0887 28 1 2.9370 -0.1048 -4.2555 29 1 2.9173 -1.1205 1.0286 30 1 2.7589 1.0461 2.1181 31 1 1.0872 0.6163 2.5525 32 1 3.3586 1.2266 4.5574 33 1 1.6681 0.8356 4.9574 34 1 3.1322 0.3107 6.8727 35 1 4.1349 -0.7369 5.8389 36 1 1.1794 -1.1330 6.5025 37 1 2.5380 -2.1222 7.0913 38 1 4.0836 -2.4793 4.1178 39 1 3.9345 -3.3343 5.6912 40 1 3.6950 -5.1666 4.1448 41 1 2.8217 -4.1584 2.9531 42 1 0.9649 -3.7229 6.2865 43 1 0.1657 -3.3466 4.7351 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195658808.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:14 Heat of formation + Delta-G solvation = -121.278010 kcal Electronic energy + Delta-G solvation = -22032.921241 eV Core-core repulsion = 18883.647073 eV Total energy + Delta-G solvation = -3149.274167 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.63772 -38.99079 -37.57757 -34.76611 -34.58549 -33.43502 -31.48953 -30.65546 -28.39029 -27.31933 -25.99178 -23.83539 -23.16169 -22.47449 -21.51031 -20.26176 -19.11227 -18.11961 -17.38021 -17.11454 -16.55183 -16.04534 -15.94838 -15.56853 -15.48851 -15.00403 -14.88482 -14.54816 -14.20245 -14.03867 -13.86908 -13.49482 -13.27809 -12.98106 -12.93847 -12.65291 -12.61455 -12.59162 -12.41762 -12.19073 -11.89044 -11.81906 -11.78751 -11.47267 -11.07906 -10.98375 -10.75541 -10.54168 -10.20565 -9.01867 -8.32305 -6.38242 1.30264 1.33285 1.44255 2.30825 2.62210 2.93069 3.00403 3.41142 3.48861 3.76329 3.84178 3.94187 4.08298 4.12778 4.25480 4.28726 4.32867 4.41416 4.48363 4.53448 4.69383 4.71622 4.74983 4.82784 4.87119 4.88940 4.92824 4.96903 5.00162 5.05234 5.07836 5.11755 5.14129 5.22541 5.42021 5.49758 5.68315 5.96411 6.03666 6.48262 6.54395 6.69405 6.86764 7.31268 8.84668 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.024244 B = 0.005012 C = 0.004548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.647773 B = 5585.034895 C = 6155.653832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.184 3.816 3 H 0.006 0.994 4 C -0.522 4.522 5 H 0.032 0.968 6 C 0.016 3.984 7 N -0.945 5.945 8 Si 0.944 3.056 9 H -0.265 1.265 10 H -0.285 1.285 11 H -0.248 1.248 12 N -0.681 5.681 13 C 0.063 3.937 14 C 0.098 3.902 15 H 0.057 0.943 16 C -0.147 4.147 17 C -0.115 4.115 18 C -0.131 4.131 19 C 0.078 3.922 20 C -0.173 4.173 21 C 0.050 3.950 22 O -0.406 6.406 23 C 0.062 3.938 24 O -0.367 6.367 25 H 0.046 0.954 26 H 0.037 0.963 27 H 0.036 0.964 28 H 0.267 0.733 29 H 0.332 0.668 30 H 0.042 0.958 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.040 0.960 42 H 0.109 0.891 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.293 1.895 23.676 23.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.075 3.925 3 H 0.023 0.977 4 C -0.560 4.560 5 H 0.051 0.949 6 C -0.182 4.182 7 N -0.585 5.585 8 Si 0.767 3.233 9 H -0.190 1.190 10 H -0.211 1.211 11 H -0.172 1.172 12 N -0.312 5.312 13 C -0.066 4.066 14 C 0.040 3.960 15 H 0.075 0.925 16 C -0.185 4.185 17 C -0.153 4.153 18 C -0.169 4.169 19 C 0.038 3.962 20 C -0.211 4.211 21 C -0.026 4.026 22 O -0.326 6.326 23 C -0.014 4.014 24 O -0.286 6.286 25 H 0.065 0.935 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.150 0.850 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.115 0.885 38 H 0.104 0.896 39 H 0.127 0.873 40 H 0.119 0.881 41 H 0.059 0.941 42 H 0.127 0.873 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.459 1.429 23.552 23.640 hybrid contribution 0.975 1.181 -1.139 1.909 sum 2.434 2.610 22.413 22.695 Atomic orbital electron populations 1.21727 0.97141 1.00016 0.98820 1.19435 0.93192 0.91930 0.87913 0.97666 1.21276 1.43412 0.94091 0.97238 0.94922 1.25912 0.94031 1.03652 0.94642 1.70061 1.47804 1.38028 1.02602 0.85795 0.79907 0.79895 0.77664 1.19028 1.21103 1.17219 1.60512 1.32679 1.33254 1.04760 1.22089 1.00794 0.93650 0.90114 1.22174 0.92776 0.87165 0.93860 0.92529 1.22172 1.02970 0.98532 0.94850 1.21605 0.98958 0.96909 0.97785 1.21959 1.01382 0.97459 0.96103 1.22517 0.93784 0.91883 0.87970 1.23780 0.98014 0.96691 1.02590 1.23424 0.85189 0.97739 0.96272 1.88386 1.36781 1.32789 1.74611 1.23185 0.96015 0.82882 0.99354 1.87975 1.50376 1.43702 1.46572 0.93534 0.94413 0.94488 0.92396 0.85019 0.93984 0.91362 0.89743 0.91152 0.89347 0.91097 0.90775 0.88481 0.89618 0.87315 0.88083 0.94113 0.87349 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.32 9.42 71.98 0.68 -4.64 16 2 C 0.18 8.78 2.26 44.17 0.10 8.88 16 3 H 0.01 0.27 4.95 -2.39 -0.01 0.26 16 4 C -0.52 -30.16 8.84 25.60 0.23 -29.94 16 5 H 0.03 2.14 8.06 -2.91 -0.02 2.11 16 6 C 0.02 0.91 5.47 84.65 0.46 1.37 16 7 N -0.95 -59.11 13.96 21.45 0.30 -58.81 16 8 Si 0.94 43.91 26.99 68.60 1.85 45.76 16 9 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 10 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 11 H -0.25 -10.81 6.82 99.48 0.68 -10.13 16 12 N -0.68 -28.63 6.17 -495.46 -3.06 -31.69 16 13 C 0.06 2.07 5.18 86.30 0.45 2.51 16 14 C 0.10 2.60 2.63 30.62 0.08 2.68 16 15 H 0.06 1.49 6.26 -2.39 -0.01 1.47 16 16 C -0.15 -2.81 5.40 30.69 0.17 -2.64 16 17 C -0.12 -1.65 5.84 30.76 0.18 -1.47 16 18 C -0.13 -2.03 4.72 30.46 0.14 -1.89 16 19 C 0.08 1.76 0.84 -10.24 -0.01 1.75 16 20 C -0.17 -3.54 5.32 31.86 0.17 -3.37 16 21 C 0.05 1.27 7.78 72.69 0.57 1.84 16 22 O -0.41 -11.71 11.37 -148.98 -1.69 -13.41 16 23 C 0.06 1.48 7.18 72.22 0.52 2.00 16 24 O -0.37 -11.01 9.74 -148.97 -1.45 -12.46 16 25 H 0.05 1.82 7.35 -2.39 -0.02 1.80 16 26 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 29 H 0.33 14.37 8.35 -89.69 -0.75 13.62 16 30 H 0.04 1.31 8.05 -2.39 -0.02 1.29 16 31 H 0.07 2.27 7.36 -2.39 -0.02 2.25 16 32 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.07 0.95 7.61 -2.39 -0.02 0.93 16 36 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 37 H 0.10 1.08 8.04 -2.39 -0.02 1.06 16 38 H 0.09 1.82 6.10 -2.39 -0.01 1.80 16 39 H 0.11 1.62 7.93 -2.38 -0.02 1.60 16 40 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.11 1.90 7.78 -2.39 -0.02 1.88 16 43 H 0.06 1.67 8.06 -2.39 -0.02 1.65 16 Total: -1.00 -68.88 329.51 -0.12 -69.00 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: 0.20 Total: 24.53 kcal Atomic # 6 Polarization: -26.65 SS G_CDS: 3.73 Total: -22.92 kcal Atomic # 7 Polarization: -87.74 SS G_CDS: -2.76 Total: -90.50 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -3.15 Total: -25.87 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.85 Total: 45.76 kcal Total: -68.88 -0.12 -69.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195658808.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.282 kcal (2) G-P(sol) polarization free energy of solvation -68.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds