Wall clock time and date at job start Mon Mar 30 2020 00:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47283 * 2 1 4 4 C 1.50697 * 109.47289 * 239.99812 * 2 1 3 5 5 H 1.07998 * 120.00067 * 240.00528 * 4 2 1 6 6 C 1.37877 * 120.00080 * 60.00039 * 4 2 1 7 7 N 1.31516 * 119.99562 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00221 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47308 * 59.99831 * 8 6 4 10 10 H 1.48500 * 109.47219 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46993 * 300.00007 * 8 6 4 12 12 N 1.46902 * 109.46912 * 119.99773 * 2 1 3 13 13 C 1.46894 * 111.00333 * 274.99852 * 12 2 1 14 14 C 1.53002 * 109.47150 * 180.02562 * 13 12 2 15 15 H 1.08992 * 109.48482 * 60.03763 * 14 13 12 16 16 C 1.53089 * 109.49725 * 180.02562 * 14 13 12 17 17 C 1.53194 * 109.22796 * 178.11582 * 16 14 13 18 18 C 1.53270 * 108.95751 * 302.46775 * 17 16 14 19 19 C 1.52486 * 109.25479 * 55.98873 * 18 17 16 20 20 C 1.54018 * 110.15458 * 181.57926 * 19 18 17 21 21 C 1.54598 * 103.89443 * 241.49220 * 20 19 18 22 22 O 1.44472 * 104.82131 * 23.88026 * 21 20 19 23 23 C 1.44548 * 105.35833 * 319.82424 * 22 21 20 24 24 O 1.42187 * 110.99384 * 304.10127 * 19 18 17 25 25 H 1.09001 * 109.47038 * 60.00052 * 1 2 3 26 26 H 1.08997 * 109.47283 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47221 * 300.00338 * 1 2 3 28 28 H 0.97006 * 119.99613 * 179.97438 * 7 6 4 29 29 H 1.00903 * 110.99811 * 151.04063 * 12 2 1 30 30 H 1.09005 * 109.47058 * 59.99946 * 13 12 2 31 31 H 1.08998 * 109.47293 * 300.00294 * 13 12 2 32 32 H 1.08996 * 109.51261 * 298.04513 * 16 14 13 33 33 H 1.09002 * 109.51316 * 58.14528 * 16 14 13 34 34 H 1.09001 * 109.55226 * 182.62509 * 17 16 14 35 35 H 1.09005 * 109.55195 * 62.31251 * 17 16 14 36 36 H 1.09004 * 109.51028 * 296.05691 * 18 17 16 37 37 H 1.09004 * 109.50723 * 175.92397 * 18 17 16 38 38 H 1.09007 * 110.54254 * 0.09455 * 20 19 18 39 39 H 1.09000 * 110.54216 * 122.74234 * 20 19 18 40 40 H 1.09003 * 110.36884 * 142.71711 * 21 20 19 41 41 H 1.09001 * 110.36634 * 265.04413 * 21 20 19 42 42 H 1.09001 * 110.38893 * 281.23016 * 23 22 21 43 43 H 1.09000 * 110.38450 * 158.84137 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6033 8 14 2.3214 -1.1205 -4.0079 9 1 1.8260 -2.5203 -4.0077 10 1 1.8271 -0.4200 -5.2204 11 1 3.8064 -1.1210 -4.0081 12 7 2.0196 -0.6925 1.1995 13 6 2.0825 0.2226 2.3469 14 6 2.5962 -0.5329 3.5742 15 1 3.5919 -0.9258 3.3688 16 6 2.6613 0.4200 4.7706 17 6 3.1313 -0.3534 6.0066 18 6 2.1707 -1.5208 6.2585 19 6 2.0918 -2.3864 5.0055 20 6 1.1006 -3.5451 5.2226 21 6 1.9722 -4.8128 5.0694 22 8 3.3160 -4.3760 5.3704 23 6 3.4442 -3.0767 4.7501 24 8 1.7087 -1.6131 3.8755 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 0.7096 1.1618 -3.4844 29 1 2.9172 -1.1206 1.0288 30 1 1.0870 0.6164 2.5525 31 1 2.7588 1.0462 2.1182 32 1 3.3635 1.2257 4.5564 33 1 1.6723 0.8389 4.9566 34 1 3.1349 0.3094 6.8720 35 1 4.1367 -0.7383 5.8356 36 1 1.1801 -1.1326 6.4956 37 1 2.5367 -2.1200 7.0923 38 1 0.6684 -3.4966 6.2221 39 1 0.3160 -3.5239 4.4663 40 1 1.6549 -5.5791 5.7766 41 1 1.9158 -5.1908 4.0485 42 1 3.6203 -3.1826 3.6797 43 1 4.2525 -2.5122 5.2149 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195658810.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:16 Heat of formation + Delta-G solvation = -100.030692 kcal Electronic energy + Delta-G solvation = -21867.615428 eV Core-core repulsion = 18719.262613 eV Total energy + Delta-G solvation = -3148.352815 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.61919 -37.91012 -35.75111 -33.66236 -33.13877 -31.83135 -29.99891 -28.57718 -27.02728 -25.38339 -24.71848 -23.33537 -21.91117 -21.08988 -19.72649 -19.24324 -17.04445 -16.70994 -16.27155 -15.67840 -15.26641 -14.82282 -14.54998 -14.20803 -13.98049 -13.93484 -13.62086 -13.08794 -12.70021 -12.65153 -12.35299 -12.10140 -11.79793 -11.56099 -11.42902 -11.27971 -11.08797 -10.98323 -10.90933 -10.72719 -10.58075 -10.23999 -10.18578 -10.07763 -9.88899 -9.65510 -9.13737 -8.79073 -8.44545 -7.17672 -6.00145 -4.06405 3.32531 3.36848 3.39931 3.60088 4.13407 4.41011 4.43528 4.58700 4.70372 4.72976 4.93969 4.98670 5.10923 5.20944 5.28037 5.31437 5.38549 5.52763 5.63431 5.63748 5.68272 5.74731 5.76360 5.82192 5.87363 5.97702 5.99247 6.05678 6.15764 6.24406 6.46981 6.67671 6.93339 7.19865 7.28586 7.51302 7.59299 7.80927 7.93917 8.31533 8.43683 8.71807 9.04540 9.59353 11.06150 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.024145 B = 0.004520 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.390706 B = 6193.061048 C = 6770.379356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.212 3.788 3 H -0.001 1.001 4 C -0.517 4.517 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.679 5.679 13 C 0.069 3.931 14 C 0.094 3.906 15 H 0.053 0.947 16 C -0.152 4.152 17 C -0.123 4.123 18 C -0.136 4.136 19 C 0.086 3.914 20 C -0.143 4.143 21 C 0.046 3.954 22 O -0.376 6.376 23 C 0.021 3.979 24 O -0.335 6.335 25 H 0.079 0.921 26 H 0.031 0.969 27 H 0.003 0.997 28 H 0.261 0.739 29 H 0.327 0.673 30 H 0.071 0.929 31 H 0.033 0.967 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.966 -4.330 17.801 18.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.104 3.896 3 H 0.016 0.984 4 C -0.556 4.556 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.204 1.204 12 N -0.309 5.309 13 C -0.061 4.061 14 C 0.036 3.964 15 H 0.071 0.929 16 C -0.190 4.190 17 C -0.160 4.160 18 C -0.174 4.174 19 C 0.046 3.954 20 C -0.180 4.180 21 C -0.031 4.031 22 O -0.294 6.294 23 C -0.056 4.056 24 O -0.254 6.254 25 H 0.097 0.903 26 H 0.050 0.950 27 H 0.022 0.978 28 H 0.071 0.929 29 H 0.144 0.856 30 H 0.089 0.911 31 H 0.050 0.950 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.243 -4.603 17.820 18.541 hybrid contribution 1.120 0.374 -1.072 1.595 sum 3.363 -4.229 16.748 17.598 Atomic orbital electron populations 1.21686 0.97858 0.99353 0.99148 1.19101 0.92704 0.92129 0.85634 0.98386 1.21229 1.31426 1.12447 0.90490 0.92325 1.24917 0.95068 0.95004 0.99006 1.69896 1.36663 1.22891 1.23499 0.86587 0.79024 0.79822 0.82107 1.20194 1.21318 1.20381 1.60646 1.31842 1.32823 1.05619 1.21925 1.00519 0.93512 0.90185 1.22233 0.93137 0.87003 0.94023 0.92934 1.22212 1.02617 0.98823 0.95343 1.21662 0.98945 0.97169 0.98264 1.22064 1.00749 0.97157 0.97430 1.22280 0.93910 0.91722 0.87529 1.22864 0.98871 0.92945 1.03368 1.23450 0.81896 0.96485 1.01279 1.89111 1.31163 1.33641 1.75526 1.24108 0.98201 0.84300 0.99024 1.88092 1.49471 1.42872 1.44979 0.90276 0.94958 0.97779 0.92919 0.85592 0.91086 0.94953 0.90907 0.90875 0.91446 0.91810 0.90894 0.90800 0.90026 0.88684 0.89116 0.91697 0.90932 0.89036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.13 9.19 37.16 0.34 -2.79 16 2 C 0.21 5.46 2.60 -68.86 -0.18 5.28 16 3 H 0.00 -0.04 7.80 -51.93 -0.40 -0.45 16 4 C -0.52 -14.37 8.59 -34.44 -0.30 -14.66 16 5 H 0.06 1.60 7.62 -52.49 -0.40 1.20 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.68 11.32 55.43 0.63 -25.06 16 8 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.68 -14.79 6.17 -107.95 -0.67 -15.46 16 13 C 0.07 1.25 5.18 -3.83 -0.02 1.23 16 14 C 0.09 1.39 2.62 -26.68 -0.07 1.32 16 15 H 0.05 0.76 7.19 -51.93 -0.37 0.38 16 16 C -0.15 -1.80 5.40 -26.58 -0.14 -1.94 16 17 C -0.12 -1.24 5.82 -26.49 -0.15 -1.39 16 18 C -0.14 -1.45 4.65 -26.85 -0.12 -1.58 16 19 C 0.09 1.10 1.04 -89.84 -0.09 1.00 16 20 C -0.14 -1.63 6.52 -25.36 -0.17 -1.80 16 21 C 0.05 0.51 7.64 38.00 0.29 0.80 16 22 O -0.38 -4.99 11.65 -35.23 -0.41 -5.40 16 23 C 0.02 0.26 5.62 37.66 0.21 0.48 16 24 O -0.34 -5.34 9.64 -35.23 -0.34 -5.68 16 25 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 26 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 28 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16 29 H 0.33 6.97 8.22 -39.29 -0.32 6.64 16 30 H 0.07 1.35 7.44 -51.93 -0.39 0.97 16 31 H 0.03 0.58 8.06 -51.93 -0.42 0.16 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.62 6.56 -51.93 -0.34 0.28 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.78 7.71 -51.92 -0.40 0.38 16 39 H 0.09 1.18 7.99 -51.93 -0.41 0.77 16 40 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 1.02 7.90 -51.93 -0.41 0.61 16 43 H 0.09 1.04 6.21 -51.93 -0.32 0.72 16 LS Contribution 329.49 15.07 4.97 4.97 Total: -1.00 -29.83 329.49 -8.76 -38.58 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -7.41 Total: 4.07 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -0.50 Total: -12.44 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: -0.04 Total: -40.52 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: -0.75 Total: -11.08 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.83 -8.76 -38.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195658810.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.450 kcal (2) G-P(sol) polarization free energy of solvation -29.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds