Wall clock time and date at job start Mon Mar 30 2020 00:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47283 * 2 1 4 4 C 1.50697 * 109.47289 * 239.99812 * 2 1 3 5 5 H 1.07998 * 120.00067 * 240.00528 * 4 2 1 6 6 C 1.37877 * 120.00080 * 60.00039 * 4 2 1 7 7 N 1.31516 * 119.99562 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00221 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47308 * 59.99831 * 8 6 4 10 10 H 1.48500 * 109.47219 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46993 * 300.00007 * 8 6 4 12 12 N 1.46902 * 109.46912 * 119.99773 * 2 1 3 13 13 C 1.46894 * 111.00333 * 274.99852 * 12 2 1 14 14 C 1.53002 * 109.47150 * 180.02562 * 13 12 2 15 15 H 1.08992 * 109.48482 * 60.03763 * 14 13 12 16 16 C 1.53089 * 109.49725 * 180.02562 * 14 13 12 17 17 C 1.53194 * 109.22796 * 178.11582 * 16 14 13 18 18 C 1.53270 * 108.95751 * 302.46775 * 17 16 14 19 19 C 1.52486 * 109.25479 * 55.98873 * 18 17 16 20 20 C 1.54018 * 110.15458 * 181.57926 * 19 18 17 21 21 C 1.54598 * 103.89443 * 241.49220 * 20 19 18 22 22 O 1.44472 * 104.82131 * 23.88026 * 21 20 19 23 23 C 1.44548 * 105.35833 * 319.82424 * 22 21 20 24 24 O 1.42187 * 110.99384 * 304.10127 * 19 18 17 25 25 H 1.09001 * 109.47038 * 60.00052 * 1 2 3 26 26 H 1.08997 * 109.47283 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47221 * 300.00338 * 1 2 3 28 28 H 0.97006 * 119.99613 * 179.97438 * 7 6 4 29 29 H 1.00903 * 110.99811 * 151.04063 * 12 2 1 30 30 H 1.09005 * 109.47058 * 59.99946 * 13 12 2 31 31 H 1.08998 * 109.47293 * 300.00294 * 13 12 2 32 32 H 1.08996 * 109.51261 * 298.04513 * 16 14 13 33 33 H 1.09002 * 109.51316 * 58.14528 * 16 14 13 34 34 H 1.09001 * 109.55226 * 182.62509 * 17 16 14 35 35 H 1.09005 * 109.55195 * 62.31251 * 17 16 14 36 36 H 1.09004 * 109.51028 * 296.05691 * 18 17 16 37 37 H 1.09004 * 109.50723 * 175.92397 * 18 17 16 38 38 H 1.09007 * 110.54254 * 0.09455 * 20 19 18 39 39 H 1.09000 * 110.54216 * 122.74234 * 20 19 18 40 40 H 1.09003 * 110.36884 * 142.71711 * 21 20 19 41 41 H 1.09001 * 110.36634 * 265.04413 * 21 20 19 42 42 H 1.09001 * 110.38893 * 281.23016 * 23 22 21 43 43 H 1.09000 * 110.38450 * 158.84137 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6033 8 14 2.3214 -1.1205 -4.0079 9 1 1.8260 -2.5203 -4.0077 10 1 1.8271 -0.4200 -5.2204 11 1 3.8064 -1.1210 -4.0081 12 7 2.0196 -0.6925 1.1995 13 6 2.0825 0.2226 2.3469 14 6 2.5962 -0.5329 3.5742 15 1 3.5919 -0.9258 3.3688 16 6 2.6613 0.4200 4.7706 17 6 3.1313 -0.3534 6.0066 18 6 2.1707 -1.5208 6.2585 19 6 2.0918 -2.3864 5.0055 20 6 1.1006 -3.5451 5.2226 21 6 1.9722 -4.8128 5.0694 22 8 3.3160 -4.3760 5.3704 23 6 3.4442 -3.0767 4.7501 24 8 1.7087 -1.6131 3.8755 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 0.7096 1.1618 -3.4844 29 1 2.9172 -1.1206 1.0288 30 1 1.0870 0.6164 2.5525 31 1 2.7588 1.0462 2.1182 32 1 3.3635 1.2257 4.5564 33 1 1.6723 0.8389 4.9566 34 1 3.1349 0.3094 6.8720 35 1 4.1367 -0.7383 5.8356 36 1 1.1801 -1.1326 6.4956 37 1 2.5367 -2.1200 7.0923 38 1 0.6684 -3.4966 6.2221 39 1 0.3160 -3.5239 4.4663 40 1 1.6549 -5.5791 5.7766 41 1 1.9158 -5.1908 4.0485 42 1 3.6203 -3.1826 3.6797 43 1 4.2525 -2.5122 5.2149 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195658810.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:15 Heat of formation + Delta-G solvation = -120.204343 kcal Electronic energy + Delta-G solvation = -21868.490223 eV Core-core repulsion = 18719.262613 eV Total energy + Delta-G solvation = -3149.227610 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.61884 -39.01663 -37.50798 -34.82371 -34.62725 -33.28413 -31.27196 -30.02089 -28.25915 -27.34477 -26.11867 -24.28149 -23.13287 -22.15964 -21.67078 -20.26380 -18.59616 -18.04521 -17.45236 -16.92517 -16.59832 -16.29825 -15.73806 -15.58022 -15.40737 -15.11556 -14.69166 -14.50129 -14.39490 -13.79692 -13.54091 -13.32239 -13.16809 -13.01756 -12.83117 -12.68729 -12.49897 -12.39729 -12.24411 -12.19435 -12.08191 -11.89694 -11.87475 -11.46180 -11.06951 -10.90421 -10.75436 -10.57208 -10.17951 -8.99655 -8.13436 -6.27747 1.41971 1.44237 1.51854 2.41331 2.56796 3.14739 3.17000 3.45655 3.54582 3.71974 3.78962 3.93556 4.07656 4.10559 4.23182 4.27094 4.32940 4.41694 4.49844 4.63373 4.64331 4.76487 4.80577 4.84438 4.89230 4.95947 4.98189 5.01774 5.07546 5.11142 5.12843 5.19119 5.22702 5.39247 5.46498 5.66045 5.71693 5.85183 6.21412 6.46552 6.49248 6.79273 7.00685 7.42623 8.92172 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.024145 B = 0.004520 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.390706 B = 6193.061048 C = 6770.379356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.216 3.784 3 H -0.030 1.030 4 C -0.539 4.539 5 H 0.057 0.943 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.963 3.037 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.270 1.270 12 N -0.679 5.679 13 C 0.069 3.931 14 C 0.100 3.900 15 H 0.056 0.944 16 C -0.147 4.147 17 C -0.119 4.119 18 C -0.132 4.132 19 C 0.079 3.921 20 C -0.142 4.142 21 C 0.043 3.957 22 O -0.387 6.387 23 C 0.022 3.978 24 O -0.364 6.364 25 H 0.057 0.943 26 H 0.023 0.977 27 H 0.018 0.982 28 H 0.263 0.737 29 H 0.329 0.671 30 H 0.059 0.941 31 H 0.036 0.964 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.079 0.921 40 H 0.117 0.883 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.755 -4.937 19.267 20.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.108 3.892 3 H -0.012 1.012 4 C -0.577 4.577 5 H 0.076 0.924 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.789 3.211 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.195 1.195 12 N -0.310 5.310 13 C -0.061 4.061 14 C 0.042 3.958 15 H 0.074 0.926 16 C -0.185 4.185 17 C -0.156 4.156 18 C -0.169 4.169 19 C 0.039 3.961 20 C -0.180 4.180 21 C -0.033 4.033 22 O -0.306 6.306 23 C -0.055 4.055 24 O -0.284 6.284 25 H 0.076 0.924 26 H 0.043 0.957 27 H 0.037 0.963 28 H 0.072 0.928 29 H 0.146 0.854 30 H 0.077 0.923 31 H 0.054 0.946 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.122 0.878 39 H 0.098 0.902 40 H 0.135 0.865 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.039 -5.215 19.309 20.230 hybrid contribution 0.846 0.553 -1.501 1.810 sum 3.885 -4.662 17.808 18.814 Atomic orbital electron populations 1.21509 0.97957 0.98568 0.98771 1.18911 0.92617 0.90735 0.86981 1.01240 1.21544 1.31797 1.12680 0.91661 0.92437 1.25737 0.95128 0.95669 1.02026 1.70022 1.37403 1.24033 1.24245 0.85535 0.78760 0.78586 0.78268 1.19808 1.20787 1.19487 1.60549 1.32020 1.33310 1.05115 1.21973 1.00177 0.93593 0.90329 1.22108 0.92636 0.87366 0.93697 0.92604 1.22167 1.02908 0.98574 0.94842 1.21669 0.98943 0.97068 0.97935 1.22043 1.01164 0.97164 0.96556 1.22520 0.94058 0.92070 0.87477 1.22912 0.98319 0.92628 1.04133 1.23587 0.81090 0.97018 1.01626 1.89096 1.32235 1.33825 1.75450 1.24087 0.98894 0.84512 0.98004 1.88038 1.50139 1.43495 1.46719 0.92438 0.95735 0.96285 0.92802 0.85391 0.92290 0.94600 0.89732 0.91317 0.89266 0.91119 0.90780 0.89266 0.87770 0.90212 0.86450 0.92684 0.92994 0.87525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.74 9.19 71.98 0.66 -5.08 16 2 C 0.22 11.39 2.60 44.17 0.11 11.51 16 3 H -0.03 -1.72 7.80 -2.39 -0.02 -1.74 16 4 C -0.54 -30.31 8.59 25.60 0.22 -30.09 16 5 H 0.06 3.17 7.62 -2.91 -0.02 3.15 16 6 C 0.01 0.76 5.30 84.65 0.45 1.21 16 7 N -0.92 -53.63 11.32 21.45 0.24 -53.38 16 8 Si 0.96 44.01 29.54 68.60 2.03 46.04 16 9 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 12 N -0.68 -30.11 6.17 -495.46 -3.06 -33.17 16 13 C 0.07 2.52 5.18 86.31 0.45 2.96 16 14 C 0.10 2.87 2.62 30.62 0.08 2.95 16 15 H 0.06 1.56 7.19 -2.39 -0.02 1.54 16 16 C -0.15 -3.20 5.40 30.69 0.17 -3.03 16 17 C -0.12 -2.03 5.82 30.75 0.18 -1.86 16 18 C -0.13 -2.45 4.65 30.51 0.14 -2.31 16 19 C 0.08 1.89 1.04 -10.29 -0.01 1.88 16 20 C -0.14 -3.06 6.52 31.48 0.21 -2.86 16 21 C 0.04 0.90 7.64 72.53 0.55 1.46 16 22 O -0.39 -9.68 11.65 -148.98 -1.74 -11.42 16 23 C 0.02 0.54 5.62 72.31 0.41 0.94 16 24 O -0.36 -11.42 9.64 -148.98 -1.44 -12.86 16 25 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 26 H 0.02 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.02 0.88 7.45 -2.39 -0.02 0.87 16 28 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 29 H 0.33 14.24 8.22 -89.69 -0.74 13.51 16 30 H 0.06 2.27 7.44 -2.38 -0.02 2.26 16 31 H 0.04 1.28 8.06 -2.39 -0.02 1.26 16 32 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.07 1.13 6.56 -2.38 -0.02 1.12 16 36 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 38 H 0.10 1.73 7.71 -2.38 -0.02 1.72 16 39 H 0.08 1.96 7.99 -2.39 -0.02 1.94 16 40 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.05 1.46 7.90 -2.39 -0.02 1.44 16 43 H 0.11 2.21 6.21 -2.39 -0.01 2.20 16 Total: -1.00 -63.96 329.49 -0.10 -64.06 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: 0.24 Total: 23.03 kcal Atomic # 6 Polarization: -25.92 SS G_CDS: 3.61 Total: -22.30 kcal Atomic # 7 Polarization: -83.74 SS G_CDS: -2.81 Total: -86.56 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -3.17 Total: -24.27 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -63.96 -0.10 -64.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195658810.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.143 kcal (2) G-P(sol) polarization free energy of solvation -63.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds