Wall clock time and date at job start Mon Mar 30 2020 01:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45203 * 109.46806 * 2 1 4 4 C 1.34232 * 116.99940 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99888 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99766 * 179.97438 * 4 3 2 7 7 N 1.46900 * 109.46536 * 182.96744 * 6 4 3 8 8 C 1.46902 * 111.00353 * 286.86169 * 7 6 4 9 9 C 1.50704 * 109.46720 * 293.65738 * 8 7 6 10 10 H 1.07998 * 120.00414 * 5.04385 * 9 8 7 11 11 C 1.37880 * 119.99638 * 185.04563 * 9 8 7 12 12 N 1.31517 * 119.99863 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00145 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46950 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47178 * 120.00166 * 13 11 9 16 16 H 1.48499 * 109.47474 * 240.00366 * 13 11 9 17 17 C 1.46905 * 110.99609 * 162.91029 * 7 6 4 18 18 C 1.53001 * 109.46999 * 200.80815 * 17 7 6 19 19 C 1.54273 * 110.03125 * 290.72536 * 18 17 7 20 20 C 1.54965 * 104.15887 * 217.13779 * 19 18 17 21 21 C 1.54894 * 102.77736 * 37.88727 * 20 19 18 22 22 C 1.53875 * 110.03386 * 173.50698 * 18 17 7 23 23 H 1.09001 * 109.47882 * 300.00257 * 1 2 3 24 24 H 1.09008 * 109.47189 * 60.00539 * 1 2 3 25 25 H 1.09008 * 109.47006 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47523 * 239.99458 * 2 1 3 27 27 H 1.08996 * 109.47002 * 119.99093 * 2 1 3 28 28 H 1.08996 * 109.47231 * 62.97266 * 6 4 3 29 29 H 1.08998 * 109.47335 * 302.96483 * 6 4 3 30 30 H 1.08998 * 109.47084 * 53.65579 * 8 7 6 31 31 H 1.09001 * 109.47167 * 173.65900 * 8 7 6 32 32 H 0.97004 * 119.99878 * 179.97438 * 12 11 9 33 33 H 1.08996 * 109.47210 * 320.80169 * 17 7 6 34 34 H 1.09001 * 109.47337 * 80.80867 * 17 7 6 35 35 H 1.08997 * 110.02078 * 52.11640 * 18 17 7 36 36 H 1.08995 * 110.48198 * 335.78017 * 19 18 17 37 37 H 1.08993 * 110.48306 * 98.42901 * 19 18 17 38 38 H 1.09000 * 110.72366 * 279.57585 * 20 19 18 39 39 H 1.08998 * 110.92256 * 156.29598 * 20 19 18 40 40 H 1.09004 * 110.48342 * 203.40242 * 21 20 19 41 41 H 1.08996 * 110.59869 * 80.81701 * 21 20 19 42 42 H 1.08997 * 110.03632 * 238.57018 * 22 18 17 43 43 H 1.08999 * 110.03209 * 359.95128 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9205 2.9376 0.0000 7 7 5.3858 2.8613 -0.0710 8 6 5.9522 2.4116 1.2077 9 6 5.7046 3.4590 2.2627 10 1 5.1094 4.3296 2.0302 11 6 6.2381 3.3056 3.5248 12 7 6.9634 2.2456 3.8078 13 14 5.9320 4.6040 4.8324 14 1 5.0923 5.6894 4.2650 15 1 5.2301 3.9879 5.9869 16 1 7.2296 5.1666 5.2849 17 6 5.9610 4.1507 -0.4770 18 6 7.3675 3.9282 -1.0364 19 6 8.3263 3.5070 0.0965 20 6 9.6620 4.2086 -0.2569 21 6 9.1940 5.5767 -0.8122 22 6 7.9191 5.2433 -1.6144 23 1 -0.3635 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8900 28 1 3.6274 3.4523 0.9149 29 1 3.5431 3.4865 -0.8627 30 1 5.4786 1.4764 1.5060 31 1 7.0251 2.2559 1.0951 32 1 7.3391 2.1379 4.6956 33 1 5.3325 4.6035 -1.2439 34 1 6.0141 4.8131 0.3870 35 1 7.3443 3.1610 -1.8103 36 1 7.9552 3.8567 1.0599 37 1 8.4537 2.4246 0.1057 38 1 10.2029 3.6471 -1.0187 39 1 10.2783 4.3429 0.6321 40 1 9.9550 6.0038 -1.4655 41 1 8.9634 6.2628 0.0027 42 1 8.1643 5.1141 -2.6685 43 1 7.1844 6.0398 -1.4971 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202189583.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:08 Heat of formation + Delta-G solvation = -95.420868 kcal Electronic energy + Delta-G solvation = -21792.804393 eV Core-core repulsion = 18644.651475 eV Total energy + Delta-G solvation = -3148.152918 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.88177 -38.31628 -36.38502 -35.25261 -32.48781 -31.58840 -29.72300 -28.52807 -27.38565 -25.85910 -23.78572 -22.99821 -21.10376 -20.06941 -19.68922 -18.97628 -17.14476 -16.56514 -16.21954 -15.64810 -15.28943 -14.77735 -14.41270 -14.09224 -14.07833 -13.38240 -13.01800 -12.74496 -12.72820 -12.41555 -12.34183 -11.83911 -11.43440 -11.32144 -11.24555 -10.96828 -10.89623 -10.81878 -10.66562 -10.46069 -10.25221 -10.18254 -10.06935 -9.92281 -9.77056 -9.67661 -9.45513 -9.31341 -8.35850 -7.21594 -6.01788 -4.10402 2.93666 3.09913 3.25012 3.33978 3.35601 4.39382 4.91634 5.05610 5.10549 5.19777 5.22751 5.28243 5.30657 5.38498 5.43409 5.72572 5.84999 5.87631 5.91535 5.93803 6.02690 6.04598 6.11352 6.22310 6.26029 6.28477 6.32193 6.39126 6.57019 6.67690 6.73324 6.88018 6.93830 7.07501 7.32599 7.37018 7.60807 7.98471 8.00777 8.24662 8.30164 8.51118 9.00257 9.54615 11.02795 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.013469 B = 0.006703 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.333801 B = 4176.397677 C = 5615.700966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.370 6.370 4 C 0.463 3.537 5 O -0.486 6.486 6 C 0.068 3.932 7 N -0.529 5.529 8 C 0.167 3.833 9 C -0.551 4.551 10 H 0.056 0.944 11 C 0.069 3.931 12 N -0.884 5.884 13 Si 0.882 3.118 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.283 1.283 17 C 0.066 3.934 18 C -0.079 4.079 19 C -0.117 4.117 20 C -0.128 4.128 21 C -0.122 4.122 22 C -0.117 4.117 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.034 0.966 31 H 0.062 0.938 32 H 0.261 0.739 33 H 0.047 0.953 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.096 0.904 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.062 0.938 42 H 0.055 0.945 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.021 2.378 -9.137 10.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.288 6.288 4 C 0.305 3.695 5 O -0.371 6.371 6 C -0.062 4.062 7 N -0.254 5.254 8 C 0.042 3.958 9 C -0.590 4.590 10 H 0.074 0.926 11 C -0.134 4.134 12 N -0.522 5.522 13 Si 0.710 3.290 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.209 1.209 17 C -0.062 4.062 18 C -0.098 4.098 19 C -0.154 4.154 20 C -0.166 4.166 21 C -0.159 4.159 22 C -0.155 4.155 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.093 0.907 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.104 0.896 29 H 0.109 0.891 30 H 0.052 0.948 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.115 0.885 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.592 1.598 -9.356 10.544 hybrid contribution -0.362 1.039 1.546 1.898 sum -4.954 2.638 -7.810 9.617 Atomic orbital electron populations 1.21782 0.93224 1.02460 1.03244 1.22867 0.94781 0.81246 1.02324 1.86485 1.25765 1.31515 1.85077 1.23939 0.79656 0.93463 0.72456 1.90631 1.59927 1.42944 1.43570 1.21462 0.92001 0.89340 1.03355 1.62201 1.00747 1.27240 1.35167 1.20305 0.97910 0.95516 0.82103 1.21746 1.33017 1.07278 0.96973 0.92634 1.24907 0.94982 0.95293 0.98260 1.69966 1.33805 1.27260 1.21170 0.86695 0.78068 0.82030 0.82177 1.19851 1.21071 1.20910 1.22158 0.94259 0.90993 0.98749 1.21628 0.94633 0.95934 0.97570 1.22700 0.92808 0.99839 1.00091 1.22565 0.98435 0.95873 0.99733 1.22318 0.96806 0.97695 0.99126 1.22152 0.97002 0.97718 0.98616 0.91599 0.91764 0.90704 0.91705 0.91482 0.89638 0.89071 0.94777 0.92065 0.92894 0.93423 0.92295 0.91494 0.88546 0.91824 0.92633 0.92290 0.92816 0.91904 0.92639 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 10.29 37.16 0.38 -1.16 16 2 C 0.06 0.88 6.19 37.16 0.23 1.11 16 3 O -0.37 -6.38 10.22 -39.26 -0.40 -6.78 16 4 C 0.46 9.29 7.70 36.01 0.28 9.57 16 5 O -0.49 -11.30 14.57 -18.75 -0.27 -11.57 16 6 C 0.07 1.30 5.44 -4.98 -0.03 1.27 16 7 N -0.53 -11.26 4.26 -237.51 -1.01 -12.27 16 8 C 0.17 4.23 4.25 -4.97 -0.02 4.21 16 9 C -0.55 -14.48 6.25 -34.44 -0.22 -14.69 16 10 H 0.06 1.43 6.11 -52.49 -0.32 1.11 16 11 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 12 N -0.88 -25.55 13.29 55.43 0.74 -24.81 16 13 Si 0.88 20.96 29.54 -169.99 -5.02 15.94 16 14 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 C 0.07 1.23 4.17 -3.82 -0.02 1.22 16 18 C -0.08 -1.37 3.14 -89.50 -0.28 -1.65 16 19 C -0.12 -2.26 4.39 -25.03 -0.11 -2.37 16 20 C -0.13 -2.06 6.91 -24.69 -0.17 -2.23 16 21 C -0.12 -1.75 6.83 -25.07 -0.17 -1.92 16 22 C -0.12 -1.69 6.46 -25.61 -0.17 -1.85 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 25 H 0.07 0.61 8.14 -51.92 -0.42 0.18 16 26 H 0.06 0.89 8.13 -51.93 -0.42 0.46 16 27 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 28 H 0.09 1.72 6.53 -51.93 -0.34 1.38 16 29 H 0.09 1.44 7.65 -51.93 -0.40 1.04 16 30 H 0.03 0.99 6.37 -51.93 -0.33 0.66 16 31 H 0.06 1.63 4.26 -51.93 -0.22 1.41 16 32 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 33 H 0.05 0.77 7.61 -51.93 -0.40 0.38 16 34 H 0.06 1.21 5.86 -51.93 -0.30 0.91 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.10 2.19 5.87 -51.93 -0.30 1.89 16 37 H 0.06 1.33 7.12 -51.93 -0.37 0.96 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.82 7.67 -51.93 -0.40 0.42 16 LS Contribution 333.56 15.07 5.03 5.03 Total: -1.00 -29.97 333.56 -8.50 -38.46 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -7.17 Total: 2.71 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -0.38 Total: -6.71 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: -0.28 Total: -37.09 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.67 Total: -18.35 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.97 -8.50 -38.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202189583.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.958 kcal (2) G-P(sol) polarization free energy of solvation -29.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds