Wall clock time and date at job start Mon Mar 30 2020 01:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45203 * 109.46806 * 2 1 4 4 C 1.34232 * 116.99940 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99888 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99766 * 179.97438 * 4 3 2 7 7 N 1.46900 * 109.46536 * 182.96744 * 6 4 3 8 8 C 1.46902 * 111.00353 * 286.86169 * 7 6 4 9 9 C 1.50704 * 109.46720 * 293.65738 * 8 7 6 10 10 H 1.07998 * 120.00414 * 5.04385 * 9 8 7 11 11 C 1.37880 * 119.99638 * 185.04563 * 9 8 7 12 12 N 1.31517 * 119.99863 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00145 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46950 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47178 * 120.00166 * 13 11 9 16 16 H 1.48499 * 109.47474 * 240.00366 * 13 11 9 17 17 C 1.46905 * 110.99609 * 162.91029 * 7 6 4 18 18 C 1.53001 * 109.46999 * 200.80815 * 17 7 6 19 19 C 1.54273 * 110.03125 * 290.72536 * 18 17 7 20 20 C 1.54965 * 104.15887 * 217.13779 * 19 18 17 21 21 C 1.54894 * 102.77736 * 37.88727 * 20 19 18 22 22 C 1.53875 * 110.03386 * 173.50698 * 18 17 7 23 23 H 1.09001 * 109.47882 * 300.00257 * 1 2 3 24 24 H 1.09008 * 109.47189 * 60.00539 * 1 2 3 25 25 H 1.09008 * 109.47006 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47523 * 239.99458 * 2 1 3 27 27 H 1.08996 * 109.47002 * 119.99093 * 2 1 3 28 28 H 1.08996 * 109.47231 * 62.97266 * 6 4 3 29 29 H 1.08998 * 109.47335 * 302.96483 * 6 4 3 30 30 H 1.08998 * 109.47084 * 53.65579 * 8 7 6 31 31 H 1.09001 * 109.47167 * 173.65900 * 8 7 6 32 32 H 0.97004 * 119.99878 * 179.97438 * 12 11 9 33 33 H 1.08996 * 109.47210 * 320.80169 * 17 7 6 34 34 H 1.09001 * 109.47337 * 80.80867 * 17 7 6 35 35 H 1.08997 * 110.02078 * 52.11640 * 18 17 7 36 36 H 1.08995 * 110.48198 * 335.78017 * 19 18 17 37 37 H 1.08993 * 110.48306 * 98.42901 * 19 18 17 38 38 H 1.09000 * 110.72366 * 279.57585 * 20 19 18 39 39 H 1.08998 * 110.92256 * 156.29598 * 20 19 18 40 40 H 1.09004 * 110.48342 * 203.40242 * 21 20 19 41 41 H 1.08996 * 110.59869 * 80.81701 * 21 20 19 42 42 H 1.08997 * 110.03632 * 238.57018 * 22 18 17 43 43 H 1.08999 * 110.03209 * 359.95128 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9205 2.9376 0.0000 7 7 5.3858 2.8613 -0.0710 8 6 5.9522 2.4116 1.2077 9 6 5.7046 3.4590 2.2627 10 1 5.1094 4.3296 2.0302 11 6 6.2381 3.3056 3.5248 12 7 6.9634 2.2456 3.8078 13 14 5.9320 4.6040 4.8324 14 1 5.0923 5.6894 4.2650 15 1 5.2301 3.9879 5.9869 16 1 7.2296 5.1666 5.2849 17 6 5.9610 4.1507 -0.4770 18 6 7.3675 3.9282 -1.0364 19 6 8.3263 3.5070 0.0965 20 6 9.6620 4.2086 -0.2569 21 6 9.1940 5.5767 -0.8122 22 6 7.9191 5.2433 -1.6144 23 1 -0.3635 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8900 28 1 3.6274 3.4523 0.9149 29 1 3.5431 3.4865 -0.8627 30 1 5.4786 1.4764 1.5060 31 1 7.0251 2.2559 1.0951 32 1 7.3391 2.1379 4.6956 33 1 5.3325 4.6035 -1.2439 34 1 6.0141 4.8131 0.3870 35 1 7.3443 3.1610 -1.8103 36 1 7.9552 3.8567 1.0599 37 1 8.4537 2.4246 0.1057 38 1 10.2029 3.6471 -1.0187 39 1 10.2783 4.3429 0.6321 40 1 9.9550 6.0038 -1.4655 41 1 8.9634 6.2628 0.0027 42 1 8.1643 5.1141 -2.6685 43 1 7.1844 6.0398 -1.4971 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202189583.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:07 Heat of formation + Delta-G solvation = -113.183752 kcal Electronic energy + Delta-G solvation = -21793.574649 eV Core-core repulsion = 18644.651475 eV Total energy + Delta-G solvation = -3148.923174 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.43199 -39.79208 -37.85764 -36.87035 -34.54112 -32.69412 -31.11944 -30.12312 -29.00152 -27.48360 -25.59191 -24.17449 -22.62183 -21.41123 -21.35753 -20.37323 -18.78859 -18.41269 -17.69240 -17.17272 -16.78012 -16.53795 -15.88063 -15.72537 -15.46798 -14.83760 -14.60517 -14.12440 -14.07026 -13.90512 -13.55248 -13.25218 -13.01243 -12.87852 -12.72826 -12.59895 -12.56766 -12.45966 -12.07554 -11.89018 -11.83472 -11.67355 -11.47843 -11.42156 -11.36489 -11.23403 -11.11049 -10.96563 -10.46921 -9.00479 -8.10038 -6.27626 1.34716 1.35687 1.37785 1.47947 1.71601 2.38604 3.15232 3.39848 3.87751 3.91815 3.96129 4.00783 4.05666 4.14035 4.30677 4.36019 4.53774 4.55357 4.67357 4.73716 4.84977 4.86953 4.91613 4.93791 4.96192 5.03509 5.11758 5.15430 5.19654 5.31087 5.33407 5.39116 5.45887 5.53458 5.61252 5.62643 5.77979 5.88862 6.07055 6.26794 6.50982 6.93180 6.95581 7.41661 8.92743 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.013469 B = 0.006703 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.333801 B = 4176.397677 C = 5615.700966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.051 3.949 3 O -0.365 6.365 4 C 0.463 3.537 5 O -0.528 6.528 6 C 0.066 3.934 7 N -0.536 5.536 8 C 0.187 3.813 9 C -0.545 4.545 10 H 0.063 0.937 11 C 0.014 3.986 12 N -0.925 5.925 13 Si 0.948 3.052 14 H -0.260 1.260 15 H -0.286 1.286 16 H -0.280 1.280 17 C 0.067 3.933 18 C -0.077 4.077 19 C -0.116 4.116 20 C -0.125 4.125 21 C -0.117 4.117 22 C -0.109 4.109 23 H 0.065 0.935 24 H 0.075 0.925 25 H 0.101 0.899 26 H 0.068 0.932 27 H 0.052 0.948 28 H 0.077 0.923 29 H 0.135 0.865 30 H -0.011 1.011 31 H 0.041 0.959 32 H 0.261 0.739 33 H 0.084 0.916 34 H 0.039 0.961 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.031 0.969 38 H 0.070 0.930 39 H 0.052 0.948 40 H 0.082 0.918 41 H 0.056 0.944 42 H 0.079 0.921 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.156 4.613 -10.729 13.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.022 4.022 3 O -0.282 6.282 4 C 0.307 3.693 5 O -0.416 6.416 6 C -0.063 4.063 7 N -0.261 5.261 8 C 0.060 3.940 9 C -0.584 4.584 10 H 0.081 0.919 11 C -0.185 4.185 12 N -0.565 5.565 13 Si 0.774 3.226 14 H -0.184 1.184 15 H -0.212 1.212 16 H -0.206 1.206 17 C -0.060 4.060 18 C -0.096 4.096 19 C -0.154 4.154 20 C -0.163 4.163 21 C -0.155 4.155 22 C -0.147 4.147 23 H 0.084 0.916 24 H 0.094 0.906 25 H 0.119 0.881 26 H 0.086 0.914 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.153 0.847 30 H 0.007 0.993 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.058 0.942 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.050 0.950 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.101 0.899 41 H 0.075 0.925 42 H 0.097 0.903 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.762 3.860 -10.967 12.976 hybrid contribution -0.065 0.253 2.002 2.019 sum -5.827 4.113 -8.965 11.455 Atomic orbital electron populations 1.21799 0.89694 1.04400 1.03820 1.23237 0.97478 0.79638 1.01870 1.86477 1.24005 1.33439 1.84322 1.24182 0.80351 0.93408 0.71387 1.90618 1.61083 1.44223 1.45635 1.21601 0.90606 0.89309 1.04794 1.62096 1.02250 1.29088 1.32619 1.19848 0.96429 0.93605 0.84080 1.21963 1.32120 1.07218 0.97135 0.91927 1.25730 0.94891 0.97235 1.00635 1.70111 1.35298 1.29420 1.21660 0.85650 0.78048 0.79663 0.79231 1.18402 1.21179 1.20602 1.22256 0.95566 0.89250 0.98917 1.21642 0.93600 0.97837 0.96525 1.22512 0.95673 0.98031 0.99155 1.22544 0.96546 0.97064 1.00121 1.22309 0.97562 0.96181 0.99398 1.22118 0.97048 0.95864 0.99626 0.91563 0.90581 0.88076 0.91355 0.92936 0.90517 0.84710 0.99309 0.94066 0.92996 0.89813 0.94242 0.91806 0.92534 0.95013 0.91099 0.92888 0.89914 0.92492 0.90260 0.90974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 10.29 71.98 0.74 -1.84 16 2 C 0.05 1.43 6.19 71.98 0.45 1.88 16 3 O -0.37 -12.37 10.22 -51.44 -0.53 -12.90 16 4 C 0.46 18.77 7.70 71.24 0.55 19.32 16 5 O -0.53 -25.51 14.57 21.96 0.32 -25.19 16 6 C 0.07 2.48 5.44 85.56 0.47 2.94 16 7 N -0.54 -23.07 4.26 -905.35 -3.86 -26.93 16 8 C 0.19 9.95 4.25 85.56 0.36 10.31 16 9 C -0.55 -29.41 6.25 25.60 0.16 -29.25 16 10 H 0.06 3.23 6.11 -2.91 -0.02 3.21 16 11 C 0.01 0.80 5.46 84.65 0.46 1.27 16 12 N -0.92 -55.81 13.29 21.45 0.28 -55.52 16 13 Si 0.95 43.61 29.54 68.60 2.03 45.64 16 14 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 15 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 16 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 17 C 0.07 2.43 4.17 86.30 0.36 2.79 16 18 C -0.08 -2.61 3.14 -10.07 -0.03 -2.64 16 19 C -0.12 -4.64 4.39 31.70 0.14 -4.50 16 20 C -0.13 -3.93 6.91 31.91 0.22 -3.71 16 21 C -0.12 -3.04 6.83 31.67 0.22 -2.83 16 22 C -0.11 -2.79 6.46 31.32 0.20 -2.58 16 23 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 25 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 26 H 0.07 1.85 8.13 -2.39 -0.02 1.83 16 27 H 0.05 1.60 8.13 -2.39 -0.02 1.59 16 28 H 0.08 3.06 6.53 -2.39 -0.02 3.04 16 29 H 0.14 3.84 7.65 -2.39 -0.02 3.83 16 30 H -0.01 -0.70 6.37 -2.39 -0.02 -0.71 16 31 H 0.04 2.36 4.26 -2.39 -0.01 2.35 16 32 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 33 H 0.08 2.42 7.61 -2.39 -0.02 2.41 16 34 H 0.04 1.59 5.86 -2.39 -0.01 1.58 16 35 H 0.06 2.20 8.14 -2.39 -0.02 2.19 16 36 H 0.06 2.70 5.87 -2.39 -0.01 2.69 16 37 H 0.03 1.41 7.12 -2.39 -0.02 1.40 16 38 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 41 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.07 1.70 7.67 -2.39 -0.02 1.68 16 Total: -1.00 -68.62 333.56 3.52 -65.11 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.98 Total: 18.62 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: 4.29 Total: -8.84 kcal Atomic # 7 Polarization: -78.88 SS G_CDS: -3.57 Total: -82.45 kcal Atomic # 8 Polarization: -37.88 SS G_CDS: -0.21 Total: -38.09 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -68.62 3.52 -65.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202189583.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.075 kcal (2) G-P(sol) polarization free energy of solvation -68.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds