Wall clock time and date at job start Mon Mar 30 2020 01:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46858 * 110.99983 * 2 1 4 4 C 1.53089 * 109.48281 * 186.16603 * 3 2 1 5 5 C 1.52846 * 109.27577 * 301.33094 * 4 3 2 6 6 C 1.53848 * 109.74080 * 177.70319 * 5 4 3 7 7 C 1.54883 * 104.08061 * 117.59894 * 6 5 4 8 8 C 1.55020 * 102.09663 * 339.14395 * 7 6 5 9 9 H 1.08999 * 110.60784 * 278.19903 * 8 7 6 10 10 C 1.52998 * 110.60656 * 155.38551 * 8 7 6 11 11 O 1.42906 * 109.47212 * 174.99774 * 10 8 7 12 12 C 1.42894 * 114.00137 * 179.97438 * 11 10 8 13 13 C 1.50706 * 109.47263 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99758 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00102 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47483 * 269.99808 * 17 15 13 19 19 H 1.48499 * 109.47134 * 30.00322 * 17 15 13 20 20 H 1.48507 * 109.46904 * 150.00145 * 17 15 13 21 21 O 1.43481 * 109.89059 * 295.81796 * 5 4 3 22 22 C 1.52841 * 109.93129 * 56.90207 * 5 4 3 23 23 C 1.46849 * 111.00032 * 124.30639 * 2 1 3 24 24 H 1.08998 * 109.46958 * 60.00208 * 1 2 3 25 25 H 1.09002 * 109.47054 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47060 * 300.00048 * 1 2 3 27 27 H 1.08997 * 109.46731 * 66.16154 * 3 2 1 28 28 H 1.08998 * 109.46495 * 306.16656 * 3 2 1 29 29 H 1.08997 * 109.50329 * 181.39478 * 4 3 2 30 30 H 1.09002 * 109.54034 * 61.28650 * 4 3 2 31 31 H 1.09000 * 110.50516 * 358.95509 * 6 5 4 32 32 H 1.08998 * 110.62337 * 236.30314 * 6 5 4 33 33 H 1.08995 * 110.90819 * 220.94420 * 7 6 5 34 34 H 1.09003 * 110.93397 * 97.35373 * 7 6 5 35 35 H 1.09001 * 109.47860 * 55.00079 * 10 8 7 36 36 H 1.09006 * 109.47541 * 294.99519 * 10 8 7 37 37 H 1.09001 * 109.47678 * 60.00187 * 12 11 10 38 38 H 1.09006 * 109.47375 * 299.99854 * 12 11 10 39 39 H 0.97001 * 119.99646 * 359.97438 * 16 15 13 40 40 H 1.09004 * 109.50120 * 63.04927 * 22 5 4 41 41 H 1.09001 * 109.50477 * 183.16688 * 22 5 4 42 42 H 1.09005 * 109.46772 * 293.85035 * 23 2 1 43 43 H 1.09000 * 109.46624 * 53.83783 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5178 1.3335 -0.1550 5 6 4.1220 0.5243 0.9923 6 6 5.6475 0.4311 0.8155 7 6 6.2161 1.1489 2.0647 8 6 5.0154 2.0209 2.5129 9 1 4.9695 2.9401 1.9289 10 6 5.1082 2.3381 4.0068 11 8 4.0573 3.2360 4.3694 12 6 4.0529 3.5977 5.7518 13 6 2.9099 4.5425 6.0203 14 1 2.2522 4.8368 5.2157 15 6 2.7030 5.0302 7.2931 16 7 3.5036 4.6714 8.2730 17 14 1.2866 6.2017 7.6257 18 1 1.7454 7.6008 7.4323 19 1 0.1734 5.9116 6.6867 20 1 0.8149 6.0242 9.0226 21 8 3.8698 1.1843 2.2410 22 6 3.5179 -0.8795 1.0144 23 6 1.9953 -0.7727 1.1325 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.7377 1.8590 0.9400 28 1 1.5593 1.9275 -0.8297 29 1 3.9113 2.3497 -0.1302 30 1 3.7761 0.8662 -1.1053 31 1 5.9585 0.9444 -0.0944 32 1 5.9686 -0.6103 0.7943 33 1 7.0712 1.7709 1.8003 34 1 6.4849 0.4298 2.8384 35 1 6.0715 2.8011 4.2209 36 1 5.0127 1.4163 4.5807 37 1 4.9943 4.0867 6.0024 38 1 3.9352 2.7019 6.3615 39 1 4.2393 4.0634 8.1002 40 1 3.7757 -1.4012 0.0927 41 1 3.9113 -1.4316 1.8679 42 1 1.7375 -0.2713 2.0654 43 1 1.5593 -1.7717 1.1245 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205604557.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:05 Heat of formation + Delta-G solvation = -103.147882 kcal Electronic energy + Delta-G solvation = -21639.261970 eV Core-core repulsion = 18490.773984 eV Total energy + Delta-G solvation = -3148.487986 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.44939 -37.74452 -36.53404 -33.21159 -32.69209 -32.03449 -30.96845 -28.95689 -26.71483 -25.52632 -23.45797 -23.27130 -22.45435 -21.33640 -20.99471 -19.36082 -16.99761 -16.55275 -16.15022 -15.52393 -15.15836 -15.02342 -14.88802 -14.34823 -14.31010 -13.77024 -13.74005 -13.28637 -13.00982 -12.57162 -12.41546 -12.19569 -12.01008 -11.82904 -11.65900 -11.52334 -11.46527 -11.17122 -11.14547 -10.89465 -10.70168 -10.53240 -10.26459 -10.21768 -10.09524 -9.35600 -8.86528 -8.62353 -8.34481 -8.23868 -6.45958 -4.14096 3.42841 3.47559 3.64154 3.79776 3.98981 4.34285 4.48693 4.55125 4.63471 4.77665 4.90384 5.03465 5.13724 5.27044 5.32158 5.32549 5.40244 5.48585 5.50836 5.51284 5.57538 5.63396 5.71142 5.74673 5.78781 5.82822 5.84437 5.87444 5.93795 5.99982 6.04838 6.11682 6.20234 6.31716 6.75460 7.01931 7.04162 7.12775 7.19692 7.89623 8.18577 8.64850 8.81790 9.56434 10.94451 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.019259 B = 0.004560 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.551618 B = 6139.089382 C = 7137.690559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.056 3.944 4 C -0.123 4.123 5 C 0.099 3.901 6 C -0.143 4.143 7 C -0.148 4.148 8 C 0.083 3.917 9 H 0.074 0.926 10 C 0.067 3.933 11 O -0.381 6.381 12 C 0.186 3.814 13 C -0.595 4.595 14 H 0.060 0.940 15 C 0.017 3.983 16 N -0.912 5.912 17 Si 1.082 2.918 18 H -0.286 1.286 19 H -0.286 1.286 20 H -0.283 1.283 21 O -0.347 6.347 22 C -0.103 4.103 23 C 0.055 3.945 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.027 0.973 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.050 0.950 36 H 0.045 0.955 37 H -0.005 1.005 38 H -0.005 1.005 39 H 0.267 0.733 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.046 0.954 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.215 -11.125 -17.991 21.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.270 5.270 3 C -0.072 4.072 4 C -0.161 4.161 5 C 0.059 3.941 6 C -0.181 4.181 7 C -0.186 4.186 8 C 0.026 3.974 9 H 0.092 0.908 10 C -0.010 4.010 11 O -0.301 6.301 12 C 0.111 3.889 13 C -0.633 4.633 14 H 0.079 0.921 15 C -0.186 4.186 16 N -0.548 5.548 17 Si 0.909 3.091 18 H -0.212 1.212 19 H -0.212 1.212 20 H -0.208 1.208 21 O -0.266 6.266 22 C -0.141 4.141 23 C -0.073 4.073 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.046 0.954 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.012 0.988 38 H 0.013 0.987 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.064 0.936 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.289 -10.426 -17.223 20.174 hybrid contribution 0.982 -0.592 -0.376 1.207 sum 2.271 -11.019 -17.598 20.887 Atomic orbital electron populations 1.22327 0.87497 1.01766 1.00767 1.61994 1.07498 1.14067 1.43418 1.22024 0.94905 0.89029 1.01211 1.21991 0.95419 1.00518 0.98209 1.21913 0.93657 0.92906 0.85652 1.22958 0.94772 1.01699 0.98627 1.23118 0.98343 0.99354 0.97812 1.23131 0.84539 0.93668 0.96104 0.90823 1.22293 0.91932 0.94047 0.92755 1.87928 1.49330 1.63536 1.29274 1.20295 0.96995 0.94323 0.77249 1.21926 1.14199 1.29565 0.97593 0.92141 1.25939 1.01936 0.99054 0.91698 1.70773 1.16722 1.33347 1.33993 0.83371 0.74570 0.75310 0.75873 1.21220 1.21245 1.20811 1.89030 1.40418 1.59879 1.37283 1.21673 0.95065 0.94881 1.02433 1.22050 0.94994 0.97860 0.92413 0.91556 0.91608 0.95393 0.93404 0.91116 0.91193 0.90648 0.90580 0.90417 0.90150 0.90391 0.93203 0.93727 0.98780 0.98692 0.92313 0.90340 0.90898 0.93569 0.91085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.59 60.06 0.58 0.84 16 2 N -0.54 -6.72 4.90 -242.88 -1.19 -7.91 16 3 C 0.06 0.73 5.35 -3.80 -0.02 0.71 16 4 C -0.12 -1.48 4.82 -26.76 -0.13 -1.60 16 5 C 0.10 1.25 0.71 -90.34 -0.06 1.19 16 6 C -0.14 -1.48 6.26 -25.30 -0.16 -1.64 16 7 C -0.15 -1.74 6.59 -24.67 -0.16 -1.90 16 8 C 0.08 1.34 3.56 -25.66 -0.09 1.24 16 9 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 10 C 0.07 1.31 5.68 37.16 0.21 1.53 16 11 O -0.38 -9.79 10.33 -35.23 -0.36 -10.16 16 12 C 0.19 5.27 5.00 36.01 0.18 5.45 16 13 C -0.59 -18.28 9.43 -34.44 -0.32 -18.60 16 14 H 0.06 1.88 7.81 -52.48 -0.41 1.47 16 15 C 0.02 0.50 5.46 -17.82 -0.10 0.40 16 16 N -0.91 -28.47 13.65 55.43 0.76 -27.71 16 17 Si 1.08 26.06 29.90 -169.99 -5.08 20.97 16 18 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 O -0.35 -5.92 9.62 -35.23 -0.34 -6.26 16 22 C -0.10 -1.19 4.88 -26.76 -0.13 -1.32 16 23 C 0.05 0.69 5.35 -3.80 -0.02 0.67 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 26 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.76 7.84 -51.93 -0.41 0.36 16 28 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 29 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 0.69 7.68 -51.93 -0.40 0.29 16 32 H 0.08 0.69 7.69 -51.93 -0.40 0.29 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 0.89 8.05 -51.93 -0.42 0.47 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 37 H -0.01 -0.15 8.01 -51.93 -0.42 -0.57 16 38 H 0.00 -0.13 8.01 -51.93 -0.42 -0.55 16 39 H 0.27 8.27 7.22 -40.82 -0.29 7.98 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.71 7.84 -51.93 -0.41 0.30 16 43 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 LS Contribution 338.21 15.07 5.10 5.10 Total: -1.00 -33.72 338.21 -9.20 -42.93 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -7.85 Total: -3.92 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -0.23 Total: -13.04 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: -0.43 Total: -35.62 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.70 Total: -16.42 kcal Atomic # 14 Polarization: 26.06 SS G_CDS: -5.08 Total: 20.97 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.72 -9.20 -42.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205604557.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.223 kcal (2) G-P(sol) polarization free energy of solvation -33.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds