Wall clock time and date at job start Mon Mar 30 2020 01:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46858 * 110.99983 * 2 1 4 4 C 1.53089 * 109.48281 * 186.16603 * 3 2 1 5 5 C 1.52846 * 109.27577 * 301.33094 * 4 3 2 6 6 C 1.53848 * 109.74080 * 177.70319 * 5 4 3 7 7 C 1.54883 * 104.08061 * 117.59894 * 6 5 4 8 8 C 1.55020 * 102.09663 * 339.14395 * 7 6 5 9 9 H 1.08999 * 110.60784 * 278.19903 * 8 7 6 10 10 C 1.52998 * 110.60656 * 155.38551 * 8 7 6 11 11 O 1.42906 * 109.47212 * 174.99774 * 10 8 7 12 12 C 1.42894 * 114.00137 * 179.97438 * 11 10 8 13 13 C 1.50706 * 109.47263 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99758 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00102 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47483 * 269.99808 * 17 15 13 19 19 H 1.48499 * 109.47134 * 30.00322 * 17 15 13 20 20 H 1.48507 * 109.46904 * 150.00145 * 17 15 13 21 21 O 1.43481 * 109.89059 * 295.81796 * 5 4 3 22 22 C 1.52841 * 109.93129 * 56.90207 * 5 4 3 23 23 C 1.46849 * 111.00032 * 124.30639 * 2 1 3 24 24 H 1.08998 * 109.46958 * 60.00208 * 1 2 3 25 25 H 1.09002 * 109.47054 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47060 * 300.00048 * 1 2 3 27 27 H 1.08997 * 109.46731 * 66.16154 * 3 2 1 28 28 H 1.08998 * 109.46495 * 306.16656 * 3 2 1 29 29 H 1.08997 * 109.50329 * 181.39478 * 4 3 2 30 30 H 1.09002 * 109.54034 * 61.28650 * 4 3 2 31 31 H 1.09000 * 110.50516 * 358.95509 * 6 5 4 32 32 H 1.08998 * 110.62337 * 236.30314 * 6 5 4 33 33 H 1.08995 * 110.90819 * 220.94420 * 7 6 5 34 34 H 1.09003 * 110.93397 * 97.35373 * 7 6 5 35 35 H 1.09001 * 109.47860 * 55.00079 * 10 8 7 36 36 H 1.09006 * 109.47541 * 294.99519 * 10 8 7 37 37 H 1.09001 * 109.47678 * 60.00187 * 12 11 10 38 38 H 1.09006 * 109.47375 * 299.99854 * 12 11 10 39 39 H 0.97001 * 119.99646 * 359.97438 * 16 15 13 40 40 H 1.09004 * 109.50120 * 63.04927 * 22 5 4 41 41 H 1.09001 * 109.50477 * 183.16688 * 22 5 4 42 42 H 1.09005 * 109.46772 * 293.85035 * 23 2 1 43 43 H 1.09000 * 109.46624 * 53.83783 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5178 1.3335 -0.1550 5 6 4.1220 0.5243 0.9923 6 6 5.6475 0.4311 0.8155 7 6 6.2161 1.1489 2.0647 8 6 5.0154 2.0209 2.5129 9 1 4.9695 2.9401 1.9289 10 6 5.1082 2.3381 4.0068 11 8 4.0573 3.2360 4.3694 12 6 4.0529 3.5977 5.7518 13 6 2.9099 4.5425 6.0203 14 1 2.2522 4.8368 5.2157 15 6 2.7030 5.0302 7.2931 16 7 3.5036 4.6714 8.2730 17 14 1.2866 6.2017 7.6257 18 1 1.7454 7.6008 7.4323 19 1 0.1734 5.9116 6.6867 20 1 0.8149 6.0242 9.0226 21 8 3.8698 1.1843 2.2410 22 6 3.5179 -0.8795 1.0144 23 6 1.9953 -0.7727 1.1325 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.7377 1.8590 0.9400 28 1 1.5593 1.9275 -0.8297 29 1 3.9113 2.3497 -0.1302 30 1 3.7761 0.8662 -1.1053 31 1 5.9585 0.9444 -0.0944 32 1 5.9686 -0.6103 0.7943 33 1 7.0712 1.7709 1.8003 34 1 6.4849 0.4298 2.8384 35 1 6.0715 2.8011 4.2209 36 1 5.0127 1.4163 4.5807 37 1 4.9943 4.0867 6.0024 38 1 3.9352 2.7019 6.3615 39 1 4.2393 4.0634 8.1002 40 1 3.7757 -1.4012 0.0927 41 1 3.9113 -1.4316 1.8679 42 1 1.7375 -0.2713 2.0654 43 1 1.5593 -1.7717 1.1245 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205604557.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:04 Heat of formation + Delta-G solvation = -126.823427 kcal Electronic energy + Delta-G solvation = -21640.288619 eV Core-core repulsion = 18490.773984 eV Total energy + Delta-G solvation = -3149.514635 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.50366 -39.08325 -38.20275 -35.32682 -33.92365 -33.14684 -31.94086 -30.35664 -28.60844 -26.80775 -24.86461 -24.47233 -24.22329 -22.50392 -22.04377 -20.39516 -19.25010 -17.91985 -17.32498 -17.19841 -16.40720 -16.17530 -16.11908 -15.83544 -15.66816 -15.31527 -14.92647 -14.66860 -14.36255 -14.09694 -13.62175 -13.47197 -13.37846 -13.09197 -12.94606 -12.68010 -12.65262 -12.55653 -12.49920 -12.16714 -12.02927 -11.96028 -11.85194 -11.43228 -11.20835 -10.93548 -10.89904 -10.49169 -10.44011 -9.39747 -8.89717 -6.60605 1.48356 1.58482 1.78917 2.44369 2.74110 2.87752 2.97796 2.98828 3.53096 3.69900 3.74750 3.93378 3.98564 4.10622 4.17152 4.25484 4.30373 4.33869 4.38580 4.45479 4.47466 4.54596 4.57105 4.60953 4.71708 4.80217 4.81281 4.84446 4.88359 4.93983 4.95724 5.02782 5.06635 5.11692 5.18219 5.30847 5.60044 5.85275 6.02604 6.04817 6.11193 6.26550 6.58637 7.20157 8.51628 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.019259 B = 0.004560 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.551618 B = 6139.089382 C = 7137.690559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.539 5.539 3 C 0.056 3.944 4 C -0.120 4.120 5 C 0.087 3.913 6 C -0.133 4.133 7 C -0.138 4.138 8 C 0.081 3.919 9 H 0.067 0.933 10 C 0.058 3.942 11 O -0.404 6.404 12 C 0.196 3.804 13 C -0.627 4.627 14 H 0.049 0.951 15 C -0.026 4.026 16 N -0.925 5.925 17 Si 1.131 2.869 18 H -0.263 1.263 19 H -0.274 1.274 20 H -0.272 1.272 21 O -0.384 6.384 22 C -0.100 4.100 23 C 0.054 3.946 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.008 0.992 27 H 0.004 0.996 28 H 0.084 0.916 29 H 0.065 0.935 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.040 0.960 37 H -0.012 1.012 38 H -0.021 1.021 39 H 0.256 0.744 40 H 0.104 0.896 41 H 0.073 0.927 42 H 0.006 0.994 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.694 -11.738 -19.900 23.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.264 5.264 3 C -0.072 4.072 4 C -0.158 4.158 5 C 0.047 3.953 6 C -0.171 4.171 7 C -0.176 4.176 8 C 0.024 3.976 9 H 0.085 0.915 10 C -0.019 4.019 11 O -0.324 6.324 12 C 0.121 3.879 13 C -0.664 4.664 14 H 0.067 0.933 15 C -0.224 4.224 16 N -0.561 5.561 17 Si 0.949 3.051 18 H -0.188 1.188 19 H -0.199 1.199 20 H -0.197 1.197 21 O -0.305 6.305 22 C -0.137 4.137 23 C -0.074 4.074 24 H 0.099 0.901 25 H 0.101 0.899 26 H 0.027 0.973 27 H 0.023 0.977 28 H 0.103 0.897 29 H 0.083 0.917 30 H 0.119 0.881 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.059 0.941 37 H 0.006 0.994 38 H -0.003 1.003 39 H 0.065 0.935 40 H 0.123 0.877 41 H 0.091 0.909 42 H 0.024 0.976 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.801 -11.066 -19.158 22.198 hybrid contribution 0.836 -0.476 0.180 0.978 sum 2.636 -11.542 -18.978 22.368 Atomic orbital electron populations 1.22427 0.86736 1.02855 1.00561 1.62096 1.08279 1.13321 1.42696 1.22025 0.96319 0.89376 0.99484 1.22002 0.94208 1.00523 0.99081 1.22237 0.95801 0.93105 0.84115 1.22968 0.92355 1.03166 0.98567 1.23104 0.97000 0.98941 0.98525 1.23133 0.86791 0.94502 0.93175 0.91531 1.22679 0.91000 0.92734 0.95472 1.87879 1.52053 1.65044 1.27416 1.19983 0.96020 0.93182 0.78701 1.22268 1.15177 1.30905 0.98043 0.93306 1.27645 1.03718 0.99867 0.91169 1.70897 1.17039 1.33723 1.34484 0.82794 0.71669 0.74125 0.76497 1.18838 1.19904 1.19674 1.89013 1.41365 1.60389 1.39686 1.21713 0.93858 0.94477 1.03698 1.22086 0.96393 0.98243 0.90726 0.90066 0.89894 0.97300 0.97724 0.89721 0.91678 0.88120 0.88519 0.88198 0.87852 0.90095 0.91447 0.94140 0.99417 1.00319 0.93482 0.87734 0.90881 0.97593 0.89261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 9.59 127.69 1.22 1.69 16 2 N -0.54 -12.86 4.90 -922.33 -4.52 -17.38 16 3 C 0.06 1.46 5.35 86.34 0.46 1.92 16 4 C -0.12 -2.70 4.82 30.57 0.15 -2.55 16 5 C 0.09 2.07 0.71 -10.61 -0.01 2.07 16 6 C -0.13 -2.31 6.26 31.52 0.20 -2.11 16 7 C -0.14 -2.92 6.59 31.93 0.21 -2.71 16 8 C 0.08 2.62 3.56 31.28 0.11 2.73 16 9 H 0.07 2.19 8.10 -2.39 -0.02 2.17 16 10 C 0.06 2.32 5.68 71.98 0.41 2.73 16 11 O -0.40 -21.65 10.33 -148.98 -1.54 -23.19 16 12 C 0.20 11.59 5.00 71.24 0.36 11.95 16 13 C -0.63 -39.63 9.43 25.60 0.24 -39.39 16 14 H 0.05 3.13 7.81 -2.91 -0.02 3.10 16 15 C -0.03 -1.59 5.46 84.65 0.46 -1.13 16 16 N -0.93 -58.47 13.65 21.45 0.29 -58.18 16 17 Si 1.13 52.00 29.90 68.60 2.05 54.05 16 18 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 21 O -0.38 -13.40 9.62 -148.98 -1.43 -14.84 16 22 C -0.10 -2.13 4.88 30.57 0.15 -1.98 16 23 C 0.05 1.33 5.35 86.35 0.46 1.79 16 24 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.08 1.44 8.09 -2.39 -0.02 1.42 16 26 H 0.01 0.21 8.14 -2.39 -0.02 0.19 16 27 H 0.00 0.15 7.84 -2.39 -0.02 0.13 16 28 H 0.08 1.91 8.12 -2.39 -0.02 1.89 16 29 H 0.06 1.51 8.08 -2.39 -0.02 1.49 16 30 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.10 1.32 7.68 -2.39 -0.02 1.30 16 32 H 0.10 1.34 7.69 -2.39 -0.02 1.32 16 33 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.08 1.67 8.05 -2.39 -0.02 1.65 16 35 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 37 H -0.01 -0.69 8.01 -2.39 -0.02 -0.71 16 38 H -0.02 -1.27 8.01 -2.38 -0.02 -1.29 16 39 H 0.26 16.32 7.22 -92.71 -0.67 15.65 16 40 H 0.10 1.70 8.14 -2.39 -0.02 1.69 16 41 H 0.07 1.54 8.14 -2.39 -0.02 1.53 16 42 H 0.01 0.19 7.84 -2.38 -0.02 0.17 16 43 H 0.09 1.84 8.08 -2.39 -0.02 1.82 16 Total: -1.00 -75.45 338.21 0.32 -75.13 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: 1.04 Total: 9.42 kcal Atomic # 6 Polarization: -29.43 SS G_CDS: 4.43 Total: -25.00 kcal Atomic # 7 Polarization: -71.33 SS G_CDS: -4.23 Total: -75.56 kcal Atomic # 8 Polarization: -35.06 SS G_CDS: -2.97 Total: -38.03 kcal Atomic # 14 Polarization: 52.00 SS G_CDS: 2.05 Total: 54.05 kcal Total: -75.45 0.32 -75.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205604557.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.698 kcal (2) G-P(sol) polarization free energy of solvation -75.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds