Wall clock time and date at job start Mon Mar 30 2020 01:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46857 * 110.99708 * 2 1 4 4 C 1.53098 * 109.48370 * 186.16337 * 3 2 1 5 5 C 1.52843 * 109.30046 * 301.31208 * 4 3 2 6 6 C 1.53852 * 109.75216 * 177.72907 * 5 4 3 7 7 C 1.54878 * 104.07797 * 121.48461 * 6 5 4 8 8 C 1.55015 * 102.10242 * 20.85986 * 7 6 5 9 9 H 1.09005 * 110.60705 * 81.79854 * 8 7 6 10 10 C 1.52998 * 110.60770 * 204.61978 * 8 7 6 11 11 O 1.42898 * 109.47090 * 185.00254 * 10 8 7 12 12 C 1.42893 * 114.00181 * 179.97438 * 11 10 8 13 13 C 1.50707 * 109.46991 * 179.97438 * 12 11 10 14 14 H 1.07992 * 119.99869 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99530 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00381 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99707 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47388 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47073 * 120.00185 * 17 15 13 20 20 H 1.48495 * 109.47479 * 239.99979 * 17 15 13 21 21 O 1.43480 * 109.90332 * 295.85678 * 5 4 3 22 22 C 1.52934 * 109.88246 * 56.90353 * 5 4 3 23 23 C 1.46843 * 111.00467 * 124.31625 * 2 1 3 24 24 H 1.08993 * 109.47409 * 60.00123 * 1 2 3 25 25 H 1.09006 * 109.46963 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47205 * 299.99671 * 1 2 3 27 27 H 1.09002 * 109.46752 * 66.16192 * 3 2 1 28 28 H 1.08998 * 109.46590 * 306.16731 * 3 2 1 29 29 H 1.09002 * 109.50596 * 61.27365 * 4 3 2 30 30 H 1.09003 * 109.50536 * 181.35630 * 4 3 2 31 31 H 1.09000 * 110.51070 * 240.13613 * 6 5 4 32 32 H 1.09000 * 110.51030 * 2.83483 * 6 5 4 33 33 H 1.09004 * 110.90243 * 139.06116 * 7 6 5 34 34 H 1.09001 * 110.90763 * 262.62235 * 7 6 5 35 35 H 1.09007 * 109.46918 * 304.99529 * 10 8 7 36 36 H 1.08996 * 109.47523 * 64.99958 * 10 8 7 37 37 H 1.08992 * 109.47142 * 299.99620 * 12 11 10 38 38 H 1.09001 * 109.47279 * 59.99863 * 12 11 10 39 39 H 0.97002 * 119.99839 * 179.97438 * 16 15 13 40 40 H 1.08997 * 109.49491 * 183.16705 * 22 5 4 41 41 H 1.08996 * 109.52976 * 63.07382 * 22 5 4 42 42 H 1.09002 * 109.46767 * 293.85135 * 23 2 1 43 43 H 1.08998 * 109.46625 * 53.83488 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3711 0.0000 4 6 3.5179 1.3336 -0.1550 5 6 4.1227 0.5249 0.9924 6 6 5.6482 0.4326 0.8157 7 6 6.2163 1.0609 2.1124 8 6 5.0158 0.9390 3.0855 9 1 4.9709 -0.0614 3.5160 10 6 5.1079 1.9949 4.1890 11 8 4.0572 1.7878 5.1352 12 6 4.0528 2.7255 6.2134 13 6 2.9093 2.4149 7.1446 14 1 2.2520 1.5843 6.9342 15 6 2.7030 3.1907 8.2655 16 7 3.5037 4.2020 8.5219 17 14 1.2851 2.8063 9.4194 18 1 0.5382 1.6280 8.9104 19 1 1.8161 2.5079 10.7737 20 1 0.3743 3.9769 9.4917 21 8 3.8700 1.1846 2.2412 22 6 3.5180 -0.8796 1.0141 23 6 1.9953 -0.7728 1.1322 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.7376 1.8590 0.9400 28 1 1.5591 1.9275 -0.8296 29 1 3.7756 0.8661 -1.1053 30 1 3.9113 2.3499 -0.1308 31 1 5.9602 -0.6080 0.7271 32 1 5.9669 1.0033 -0.0565 33 1 7.0720 0.4927 2.4773 34 1 6.4844 2.1053 1.9535 35 1 6.0713 1.9117 4.6920 36 1 5.0114 2.9881 3.7506 37 1 4.9943 2.6571 6.7582 38 1 3.9347 3.7341 5.8172 39 1 3.3583 4.7480 9.3104 40 1 3.9114 -1.4319 1.8674 41 1 3.7757 -1.4016 0.0926 42 1 1.7376 -0.2717 2.0653 43 1 1.5594 -1.7718 1.1241 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205604558.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:06 Heat of formation + Delta-G solvation = -122.493655 kcal Electronic energy + Delta-G solvation = -21604.392362 eV Core-core repulsion = 18455.065481 eV Total energy + Delta-G solvation = -3149.326882 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.44701 -38.96630 -38.07932 -35.01890 -33.87806 -33.09227 -31.90417 -30.45474 -28.93814 -26.81434 -24.70820 -24.39450 -24.11381 -22.44385 -21.98427 -20.34965 -18.72319 -17.80351 -17.22318 -17.11522 -16.57217 -16.13040 -16.06104 -16.02952 -15.72042 -15.27904 -14.87629 -14.62259 -14.09037 -13.98898 -13.44739 -13.36209 -13.15926 -13.04084 -12.94873 -12.79877 -12.71421 -12.57976 -12.48873 -12.23068 -12.13028 -11.98966 -11.73240 -11.40599 -11.30248 -11.16786 -10.92994 -10.43541 -10.30947 -9.36545 -8.36851 -6.49705 1.36088 1.38053 1.52752 2.30993 2.79970 2.96534 3.00821 3.04110 3.58524 3.73818 3.80408 3.97959 4.06517 4.17820 4.21770 4.32493 4.38067 4.40280 4.49457 4.52431 4.57577 4.60362 4.64840 4.74235 4.81207 4.84252 4.88082 4.92611 4.96153 4.99976 5.06511 5.09166 5.12146 5.17010 5.22158 5.35184 5.49687 5.90345 6.05896 6.07833 6.16597 6.47691 6.76122 7.22330 8.75906 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.019293 B = 0.004540 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.964485 B = 6166.491401 C = 7163.068000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.540 5.540 3 C 0.054 3.946 4 C -0.100 4.100 5 C 0.087 3.913 6 C -0.133 4.133 7 C -0.139 4.139 8 C 0.082 3.918 9 H 0.067 0.933 10 C 0.060 3.940 11 O -0.410 6.410 12 C 0.209 3.791 13 C -0.551 4.551 14 H 0.057 0.943 15 C 0.008 3.992 16 N -0.929 5.929 17 Si 0.984 3.016 18 H -0.267 1.267 19 H -0.266 1.266 20 H -0.270 1.270 21 O -0.383 6.383 22 C -0.120 4.120 23 C 0.056 3.944 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.009 0.991 27 H 0.007 0.993 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.039 0.961 37 H -0.009 1.009 38 H -0.018 1.018 39 H 0.272 0.728 40 H 0.065 0.935 41 H 0.099 0.901 42 H 0.006 0.994 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.638 -9.312 -20.280 22.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.264 5.264 3 C -0.074 4.074 4 C -0.138 4.138 5 C 0.047 3.953 6 C -0.171 4.171 7 C -0.176 4.176 8 C 0.024 3.976 9 H 0.085 0.915 10 C -0.017 4.017 11 O -0.330 6.330 12 C 0.134 3.866 13 C -0.589 4.589 14 H 0.075 0.925 15 C -0.190 4.190 16 N -0.568 5.568 17 Si 0.807 3.193 18 H -0.191 1.191 19 H -0.191 1.191 20 H -0.195 1.195 21 O -0.304 6.304 22 C -0.158 4.158 23 C -0.072 4.072 24 H 0.101 0.899 25 H 0.098 0.902 26 H 0.028 0.972 27 H 0.025 0.975 28 H 0.107 0.893 29 H 0.122 0.878 30 H 0.091 0.909 31 H 0.114 0.886 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.057 0.943 37 H 0.009 0.991 38 H 0.000 1.000 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.118 0.882 42 H 0.024 0.976 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.506 -9.422 -20.557 22.752 hybrid contribution -0.636 0.826 1.825 2.102 sum 1.870 -8.596 -18.732 20.694 Atomic orbital electron populations 1.22422 0.86776 1.02742 1.00625 1.62089 1.08244 1.13523 1.42591 1.22080 0.96371 0.89238 0.99727 1.21711 0.93863 1.00538 0.97647 1.22245 0.95752 0.92547 0.84717 1.22967 0.92412 1.03305 0.98376 1.23103 0.97093 1.03041 0.94393 1.23142 0.86620 0.97230 0.90595 0.91494 1.22615 0.91099 0.98122 0.89828 1.87850 1.51980 1.55910 1.37299 1.19842 0.96001 0.86852 0.83880 1.21384 1.13733 1.15426 1.08309 0.92501 1.25965 0.99905 0.94132 0.99038 1.70068 1.39486 1.18783 1.28459 0.85125 0.77806 0.78564 0.77836 1.19146 1.19129 1.19464 1.89012 1.41354 1.74448 1.25555 1.22013 0.94209 0.96315 1.03265 1.22028 0.96317 0.98062 0.90815 0.89857 0.90220 0.97247 0.97467 0.89341 0.87838 0.90887 0.88564 0.88297 0.87907 0.90139 0.91603 0.94292 0.99090 0.99979 0.91883 0.91637 0.88231 0.97606 0.89766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 9.59 127.69 1.22 1.69 16 2 N -0.54 -12.91 4.90 -922.34 -4.52 -17.43 16 3 C 0.05 1.34 5.35 86.34 0.46 1.80 16 4 C -0.10 -2.15 4.88 30.57 0.15 -2.00 16 5 C 0.09 2.09 0.72 -10.58 -0.01 2.08 16 6 C -0.13 -2.35 6.27 31.52 0.20 -2.15 16 7 C -0.14 -2.97 6.59 31.93 0.21 -2.76 16 8 C 0.08 2.63 3.57 31.28 0.11 2.75 16 9 H 0.07 2.20 8.11 -2.38 -0.02 2.19 16 10 C 0.06 2.43 5.68 71.98 0.41 2.84 16 11 O -0.41 -21.94 10.33 -148.98 -1.54 -23.48 16 12 C 0.21 12.46 5.69 71.24 0.41 12.87 16 13 C -0.55 -34.53 9.43 25.60 0.24 -34.29 16 14 H 0.06 3.58 7.81 -2.91 -0.02 3.55 16 15 C 0.01 0.49 5.46 84.66 0.46 0.95 16 16 N -0.93 -57.12 13.29 21.45 0.28 -56.83 16 17 Si 0.98 45.74 29.54 68.60 2.03 47.77 16 18 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 19 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 21 O -0.38 -13.40 9.63 -148.98 -1.43 -14.83 16 22 C -0.12 -2.71 4.83 30.60 0.15 -2.56 16 23 C 0.06 1.45 5.35 86.35 0.46 1.92 16 24 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.08 1.43 8.09 -2.38 -0.02 1.41 16 26 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 27 H 0.01 0.23 7.84 -2.39 -0.02 0.21 16 28 H 0.09 1.84 8.12 -2.39 -0.02 1.82 16 29 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.10 1.34 7.69 -2.39 -0.02 1.32 16 32 H 0.10 1.36 7.69 -2.39 -0.02 1.34 16 33 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.08 1.70 8.06 -2.39 -0.02 1.68 16 35 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 36 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 37 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 38 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 39 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 40 H 0.06 1.52 8.09 -2.39 -0.02 1.50 16 41 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.01 0.19 7.84 -2.39 -0.02 0.17 16 43 H 0.08 1.90 8.08 -2.39 -0.02 1.88 16 Total: -1.00 -73.29 339.56 0.24 -73.05 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: 0.94 Total: 8.61 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: 4.48 Total: -16.86 kcal Atomic # 7 Polarization: -70.03 SS G_CDS: -4.23 Total: -74.26 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: -2.97 Total: -38.31 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -73.29 0.24 -73.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205604558.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.442 kcal (2) G-P(sol) polarization free energy of solvation -73.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds