Wall clock time and date at job start Mon Mar 30 2020 01:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34228 * 117.00088 * 2 1 4 4 O 1.20825 * 119.99840 * 359.97438 * 3 2 1 5 5 C 1.50692 * 120.00186 * 180.02562 * 3 2 1 6 6 H 1.09005 * 109.47389 * 300.00169 * 5 3 2 7 7 C 1.53001 * 109.47417 * 59.99831 * 5 3 2 8 8 C 1.52998 * 109.47675 * 180.02562 * 7 5 3 9 9 C 1.52999 * 109.46698 * 300.00261 * 8 7 5 10 10 H 1.09003 * 109.47266 * 299.99302 * 9 8 7 11 11 C 1.53001 * 109.47048 * 179.97438 * 9 8 7 12 12 N 1.46895 * 109.47287 * 64.52748 * 11 9 8 13 13 C 1.46901 * 111.00274 * 196.04791 * 12 11 9 14 14 C 1.46898 * 111.00477 * 72.09113 * 12 11 9 15 15 C 1.50701 * 109.47713 * 190.00325 * 14 12 11 16 16 H 1.07993 * 119.99752 * 359.97438 * 15 14 12 17 17 C 1.37870 * 119.99933 * 179.97438 * 15 14 12 18 18 N 1.31519 * 120.00254 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99847 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47161 * 59.99888 * 19 17 15 21 21 H 1.48504 * 109.47160 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47188 * 299.99631 * 19 17 15 23 23 C 1.52997 * 109.47766 * 59.99901 * 9 8 7 24 24 C 1.53000 * 109.47446 * 179.97438 * 5 3 2 25 25 H 1.09003 * 109.47016 * 60.00467 * 1 2 3 26 26 H 1.08999 * 109.47280 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47252 * 300.00194 * 1 2 3 28 28 H 1.09005 * 109.47164 * 300.00184 * 7 5 3 29 29 H 1.09005 * 109.46564 * 59.99833 * 7 5 3 30 30 H 1.08993 * 109.47409 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.46892 * 59.99409 * 8 7 5 32 32 H 1.09001 * 109.46824 * 304.52890 * 11 9 8 33 33 H 1.09005 * 109.47668 * 184.52743 * 11 9 8 34 34 H 1.08998 * 109.47502 * 54.92744 * 13 12 11 35 35 H 1.09003 * 109.47491 * 174.93202 * 13 12 11 36 36 H 1.09007 * 109.46681 * 294.92787 * 13 12 11 37 37 H 1.09005 * 109.46516 * 310.00268 * 14 12 11 38 38 H 1.08999 * 109.47036 * 69.99542 * 14 12 11 39 39 H 0.97004 * 120.00204 * 180.02562 * 18 17 15 40 40 H 1.09003 * 109.47218 * 59.99371 * 23 9 8 41 41 H 1.08996 * 109.47563 * 179.97438 * 23 9 8 42 42 H 1.09006 * 109.47123 * 59.99940 * 24 5 3 43 43 H 1.08997 * 109.47145 * 300.00169 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9564 0.7805 0.8892 7 6 4.1129 0.5815 -1.2501 8 6 5.6408 0.6610 -1.2505 9 6 6.0751 2.1281 -1.2500 10 1 5.6854 2.6227 -2.1398 11 6 7.6030 2.2077 -1.2497 12 7 8.1233 1.6387 -2.5001 13 6 9.5585 1.3461 -2.3883 14 6 7.8547 2.5303 -3.6362 15 6 8.1761 1.8151 -4.9231 16 1 8.5435 0.7999 -4.8994 17 6 8.0010 2.4569 -6.1307 18 7 7.5530 3.6931 -6.1596 19 14 8.4001 1.5705 -7.7259 20 1 7.5565 0.3539 -7.8406 21 1 8.1284 2.4720 -8.8744 22 1 9.8332 1.1815 -7.7309 23 6 5.5286 2.8215 -0.0005 24 6 4.0001 2.7421 -0.0011 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 3.8039 -0.4638 -1.2502 29 1 3.7228 1.0759 -2.1399 30 1 6.0302 0.1675 -2.1409 31 1 6.0305 0.1666 -0.3607 32 1 7.9959 1.6447 -0.4031 33 1 7.9127 3.2497 -1.1683 34 1 9.7318 0.7002 -1.5276 35 1 9.8986 0.8438 -3.2939 36 1 10.1102 2.2775 -2.2605 37 1 6.8029 2.8166 -3.6325 38 1 8.4745 3.4229 -3.5519 39 1 7.4295 4.1445 -7.0093 40 1 5.9183 2.3269 0.8893 41 1 5.8383 3.8665 0.0000 42 1 3.6107 3.2364 0.8889 43 1 3.6101 3.2360 -0.8910 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208624840.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:50 Heat of formation + Delta-G solvation = -109.023982 kcal Electronic energy + Delta-G solvation = -21294.846519 eV Core-core repulsion = 18146.103726 eV Total energy + Delta-G solvation = -3148.742793 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.72844 -38.54428 -36.64995 -35.94046 -32.65533 -31.59384 -30.54245 -28.11414 -27.29350 -26.23226 -23.94012 -22.55216 -22.38157 -20.82100 -19.80115 -19.28108 -17.56978 -16.76650 -16.49720 -16.31634 -15.02147 -14.75158 -14.25364 -14.21039 -13.99071 -13.75868 -13.54436 -13.00531 -12.99464 -12.53975 -12.09515 -12.05268 -11.98826 -11.91777 -11.48852 -11.21466 -10.98596 -10.94591 -10.89387 -10.87119 -10.64834 -10.52023 -10.45848 -10.15148 -9.85367 -9.76103 -9.64018 -9.13625 -8.39258 -7.17459 -5.99757 -4.00779 2.15912 2.65170 3.34764 3.38986 3.41697 4.44707 4.57017 4.74985 4.79552 4.93641 4.97310 5.02048 5.21765 5.30643 5.35793 5.37484 5.48312 5.50507 5.66831 5.71777 5.78404 5.93466 6.05246 6.13773 6.16008 6.20726 6.25879 6.31949 6.34897 6.38483 6.44130 6.56813 6.76320 6.87157 6.89373 7.35310 7.39392 7.69105 7.83769 8.14826 8.25325 8.60177 9.06906 9.63278 11.11076 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020239 B = 0.004268 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.161055 B = 6558.315898 C = 7231.215967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.465 3.535 4 O -0.510 6.510 5 C -0.077 4.077 6 H 0.106 0.894 7 C -0.111 4.111 8 C -0.099 4.099 9 C -0.086 4.086 10 H 0.080 0.920 11 C 0.062 3.938 12 N -0.540 5.540 13 C 0.040 3.960 14 C 0.192 3.808 15 C -0.507 4.507 16 H 0.062 0.938 17 C 0.055 3.945 18 N -0.899 5.899 19 Si 0.896 3.104 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.278 1.278 23 C -0.112 4.112 24 C -0.101 4.101 25 H 0.062 0.938 26 H 0.099 0.901 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.022 0.978 34 H 0.042 0.958 35 H 0.071 0.929 36 H 0.009 0.991 37 H 0.033 0.967 38 H -0.012 1.012 39 H 0.261 0.739 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.595 -6.286 14.346 17.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.308 3.692 4 O -0.397 6.397 5 C -0.096 4.096 6 H 0.124 0.876 7 C -0.149 4.149 8 C -0.137 4.137 9 C -0.105 4.105 10 H 0.098 0.902 11 C -0.067 4.067 12 N -0.264 5.264 13 C -0.109 4.109 14 C 0.067 3.933 15 C -0.545 4.545 16 H 0.080 0.920 17 C -0.146 4.146 18 N -0.539 5.539 19 Si 0.724 3.276 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.150 4.150 24 C -0.138 4.138 25 H 0.081 0.919 26 H 0.118 0.882 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.040 0.960 34 H 0.061 0.939 35 H 0.090 0.910 36 H 0.028 0.972 37 H 0.051 0.949 38 H 0.005 0.995 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.117 -6.285 14.123 17.947 hybrid contribution 0.314 0.526 -0.791 1.001 sum -8.803 -5.759 13.332 16.983 Atomic orbital electron populations 1.23239 0.76783 1.03518 1.02426 1.86532 1.23102 1.33795 1.84100 1.24102 0.92384 0.81087 0.71645 1.90650 1.67324 1.36430 1.45326 1.21198 0.85846 1.00016 1.02518 0.87595 1.21594 0.97692 1.00248 0.95328 1.21429 0.92443 0.96660 1.03136 1.21202 0.95235 0.96170 0.97861 0.90207 1.22033 0.94461 0.96927 0.93304 1.62093 1.13922 1.47193 1.03232 1.22174 0.89124 0.98543 1.01034 1.19764 0.96610 0.89871 0.87093 1.21140 1.43327 0.99875 0.90194 0.91997 1.24978 0.95506 0.94905 0.99192 1.69951 1.46353 1.11452 1.26122 0.86596 0.78799 0.79453 0.82754 1.20186 1.21416 1.20344 1.21585 0.93864 1.00990 0.98534 1.21439 0.96317 0.92852 1.03241 0.91919 0.88228 0.92126 0.90985 0.91298 0.89320 0.92640 0.92510 0.95973 0.93880 0.90986 0.97209 0.94900 0.99458 0.92937 0.92087 0.91580 0.91543 0.90864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.37 16 2 O -0.36 -4.23 10.47 -39.25 -0.41 -4.64 16 3 C 0.46 6.13 7.26 36.00 0.26 6.40 16 4 O -0.51 -8.01 15.73 -18.75 -0.29 -8.31 16 5 C -0.08 -0.91 2.63 -91.77 -0.24 -1.15 16 6 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 7 C -0.11 -1.43 5.13 -26.73 -0.14 -1.57 16 8 C -0.10 -1.42 5.09 -26.73 -0.14 -1.55 16 9 C -0.09 -1.34 2.20 -90.62 -0.20 -1.54 16 10 H 0.08 1.49 6.47 -51.93 -0.34 1.16 16 11 C 0.06 1.06 4.37 -3.83 -0.02 1.04 16 12 N -0.54 -11.31 4.14 -244.36 -1.01 -12.33 16 13 C 0.04 0.77 9.33 60.07 0.56 1.33 16 14 C 0.19 4.93 4.57 -4.98 -0.02 4.91 16 15 C -0.51 -14.12 8.53 -34.44 -0.29 -14.41 16 16 H 0.06 1.70 7.10 -52.49 -0.37 1.33 16 17 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 18 N -0.90 -26.75 13.29 55.43 0.74 -26.02 16 19 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 C -0.11 -1.42 5.21 -26.71 -0.14 -1.56 16 24 C -0.10 -1.27 4.50 -26.70 -0.12 -1.39 16 25 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 26 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.51 8.13 -51.93 -0.42 0.08 16 28 H 0.07 0.85 8.11 -51.93 -0.42 0.43 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.09 1.50 7.74 -51.93 -0.40 1.10 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.86 7.88 -51.93 -0.41 0.45 16 33 H 0.02 0.40 8.05 -51.93 -0.42 -0.02 16 34 H 0.04 0.70 7.98 -51.93 -0.41 0.28 16 35 H 0.07 1.47 6.89 -51.93 -0.36 1.12 16 36 H 0.01 0.18 8.14 -51.92 -0.42 -0.24 16 37 H 0.03 0.90 6.35 -51.93 -0.33 0.57 16 38 H -0.01 -0.35 8.12 -51.93 -0.42 -0.77 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 43 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 LS Contribution 341.74 15.07 5.15 5.15 Total: -1.00 -31.03 341.74 -8.03 -39.06 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -7.66 Total: -2.87 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: 0.48 Total: -6.67 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: -0.28 Total: -38.34 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -0.71 Total: -12.95 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.03 -8.03 -39.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208624840.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.960 kcal (2) G-P(sol) polarization free energy of solvation -31.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds