Wall clock time and date at job start Mon Mar 30 2020 01:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34228 * 117.00088 * 2 1 4 4 O 1.20825 * 119.99840 * 359.97438 * 3 2 1 5 5 C 1.50692 * 120.00186 * 180.02562 * 3 2 1 6 6 H 1.09005 * 109.47389 * 300.00169 * 5 3 2 7 7 C 1.53001 * 109.47417 * 59.99831 * 5 3 2 8 8 C 1.52998 * 109.47675 * 180.02562 * 7 5 3 9 9 C 1.52999 * 109.46698 * 300.00261 * 8 7 5 10 10 H 1.09003 * 109.47266 * 299.99302 * 9 8 7 11 11 C 1.53001 * 109.47048 * 179.97438 * 9 8 7 12 12 N 1.46895 * 109.47287 * 64.52748 * 11 9 8 13 13 C 1.46901 * 111.00274 * 196.04791 * 12 11 9 14 14 C 1.46898 * 111.00477 * 72.09113 * 12 11 9 15 15 C 1.50701 * 109.47713 * 190.00325 * 14 12 11 16 16 H 1.07993 * 119.99752 * 359.97438 * 15 14 12 17 17 C 1.37870 * 119.99933 * 179.97438 * 15 14 12 18 18 N 1.31519 * 120.00254 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99847 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47161 * 59.99888 * 19 17 15 21 21 H 1.48504 * 109.47160 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47188 * 299.99631 * 19 17 15 23 23 C 1.52997 * 109.47766 * 59.99901 * 9 8 7 24 24 C 1.53000 * 109.47446 * 179.97438 * 5 3 2 25 25 H 1.09003 * 109.47016 * 60.00467 * 1 2 3 26 26 H 1.08999 * 109.47280 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47252 * 300.00194 * 1 2 3 28 28 H 1.09005 * 109.47164 * 300.00184 * 7 5 3 29 29 H 1.09005 * 109.46564 * 59.99833 * 7 5 3 30 30 H 1.08993 * 109.47409 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.46892 * 59.99409 * 8 7 5 32 32 H 1.09001 * 109.46824 * 304.52890 * 11 9 8 33 33 H 1.09005 * 109.47668 * 184.52743 * 11 9 8 34 34 H 1.08998 * 109.47502 * 54.92744 * 13 12 11 35 35 H 1.09003 * 109.47491 * 174.93202 * 13 12 11 36 36 H 1.09007 * 109.46681 * 294.92787 * 13 12 11 37 37 H 1.09005 * 109.46516 * 310.00268 * 14 12 11 38 38 H 1.08999 * 109.47036 * 69.99542 * 14 12 11 39 39 H 0.97004 * 120.00204 * 180.02562 * 18 17 15 40 40 H 1.09003 * 109.47218 * 59.99371 * 23 9 8 41 41 H 1.08996 * 109.47563 * 179.97438 * 23 9 8 42 42 H 1.09006 * 109.47123 * 59.99940 * 24 5 3 43 43 H 1.08997 * 109.47145 * 300.00169 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9564 0.7805 0.8892 7 6 4.1129 0.5815 -1.2501 8 6 5.6408 0.6610 -1.2505 9 6 6.0751 2.1281 -1.2500 10 1 5.6854 2.6227 -2.1398 11 6 7.6030 2.2077 -1.2497 12 7 8.1233 1.6387 -2.5001 13 6 9.5585 1.3461 -2.3883 14 6 7.8547 2.5303 -3.6362 15 6 8.1761 1.8151 -4.9231 16 1 8.5435 0.7999 -4.8994 17 6 8.0010 2.4569 -6.1307 18 7 7.5530 3.6931 -6.1596 19 14 8.4001 1.5705 -7.7259 20 1 7.5565 0.3539 -7.8406 21 1 8.1284 2.4720 -8.8744 22 1 9.8332 1.1815 -7.7309 23 6 5.5286 2.8215 -0.0005 24 6 4.0001 2.7421 -0.0011 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 3.8039 -0.4638 -1.2502 29 1 3.7228 1.0759 -2.1399 30 1 6.0302 0.1675 -2.1409 31 1 6.0305 0.1666 -0.3607 32 1 7.9959 1.6447 -0.4031 33 1 7.9127 3.2497 -1.1683 34 1 9.7318 0.7002 -1.5276 35 1 9.8986 0.8438 -3.2939 36 1 10.1102 2.2775 -2.2605 37 1 6.8029 2.8166 -3.6325 38 1 8.4745 3.4229 -3.5519 39 1 7.4295 4.1445 -7.0093 40 1 5.9183 2.3269 0.8893 41 1 5.8383 3.8665 0.0000 42 1 3.6107 3.2364 0.8889 43 1 3.6101 3.2360 -0.8910 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208624840.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:50 Heat of formation + Delta-G solvation = -127.433390 kcal Electronic energy + Delta-G solvation = -21295.644811 eV Core-core repulsion = 18146.103726 eV Total energy + Delta-G solvation = -3149.541085 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.74142 -39.76167 -37.86994 -37.28829 -34.69608 -32.91851 -31.63223 -29.43957 -28.89279 -27.49531 -25.65801 -23.92335 -23.52324 -22.16760 -21.03455 -20.56969 -18.58811 -18.50442 -17.73814 -17.41001 -16.74468 -16.19475 -15.79512 -15.67579 -15.06164 -14.98030 -14.81603 -14.48178 -14.11290 -13.90532 -13.64408 -13.35011 -13.14023 -13.06865 -12.93560 -12.80676 -12.56643 -12.48962 -12.34035 -12.09964 -11.98761 -11.92244 -11.80302 -11.54753 -11.28021 -11.16949 -10.98229 -10.89624 -10.56458 -8.92657 -8.18309 -6.28014 1.13944 1.41003 1.44216 1.51945 1.77189 2.41449 3.14240 3.38439 3.60863 3.73174 3.80697 4.10091 4.19269 4.30143 4.31588 4.34973 4.41029 4.52845 4.58123 4.61179 4.63421 4.69668 4.74809 4.79923 4.88750 5.02594 5.10153 5.12415 5.16506 5.18697 5.23786 5.28036 5.32954 5.38718 5.42416 5.64789 5.65388 5.70994 6.10918 6.40816 6.70593 6.72528 6.89439 7.41789 8.92586 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020239 B = 0.004268 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.161055 B = 6558.315898 C = 7231.215967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.361 6.361 3 C 0.466 3.534 4 O -0.542 6.542 5 C -0.071 4.071 6 H 0.140 0.860 7 C -0.104 4.104 8 C -0.091 4.091 9 C -0.084 4.084 10 H 0.034 0.966 11 C 0.061 3.939 12 N -0.544 5.544 13 C 0.041 3.959 14 C 0.210 3.790 15 C -0.522 4.522 16 H 0.064 0.936 17 C 0.000 4.000 18 N -0.937 5.937 19 Si 0.967 3.033 20 H -0.268 1.268 21 H -0.285 1.285 22 H -0.266 1.266 23 C -0.102 4.102 24 C -0.098 4.098 25 H 0.055 0.945 26 H 0.132 0.868 27 H 0.064 0.936 28 H 0.088 0.912 29 H 0.041 0.959 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.010 0.990 34 H 0.084 0.916 35 H 0.054 0.946 36 H 0.004 0.996 37 H 0.007 0.993 38 H -0.048 1.048 39 H 0.263 0.737 40 H 0.093 0.907 41 H 0.061 0.939 42 H 0.078 0.922 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.369 -8.523 15.975 19.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.277 6.277 3 C 0.311 3.689 4 O -0.432 6.432 5 C -0.089 4.089 6 H 0.158 0.842 7 C -0.142 4.142 8 C -0.129 4.129 9 C -0.103 4.103 10 H 0.052 0.948 11 C -0.067 4.067 12 N -0.268 5.268 13 C -0.108 4.108 14 C 0.083 3.917 15 C -0.560 4.560 16 H 0.082 0.918 17 C -0.197 4.197 18 N -0.578 5.578 19 Si 0.791 3.209 20 H -0.193 1.193 21 H -0.211 1.211 22 H -0.191 1.191 23 C -0.139 4.139 24 C -0.136 4.136 25 H 0.074 0.926 26 H 0.150 0.850 27 H 0.083 0.917 28 H 0.107 0.893 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.104 0.896 32 H 0.111 0.889 33 H 0.028 0.972 34 H 0.102 0.898 35 H 0.073 0.927 36 H 0.022 0.978 37 H 0.025 0.975 38 H -0.030 1.030 39 H 0.071 0.929 40 H 0.112 0.888 41 H 0.080 0.920 42 H 0.097 0.903 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.885 -8.551 15.771 20.020 hybrid contribution 0.206 1.212 -1.254 1.756 sum -8.680 -7.339 14.518 18.438 Atomic orbital electron populations 1.23537 0.75140 1.05681 1.02315 1.86516 1.24751 1.32833 1.83560 1.24307 0.92825 0.81048 0.70759 1.90641 1.68076 1.37522 1.46944 1.21192 0.85220 0.99398 1.03119 0.84200 1.21494 0.96729 1.01071 0.94914 1.21330 0.93245 0.95258 1.03057 1.21150 0.94202 0.97322 0.97628 0.94779 1.22180 0.95437 0.96615 0.92479 1.62022 1.15342 1.45910 1.03477 1.22212 0.87723 0.98833 1.01990 1.19369 0.94177 0.89231 0.88900 1.21488 1.43133 1.00053 0.91325 0.91773 1.25912 0.95185 0.95611 1.03040 1.70095 1.47446 1.13139 1.27077 0.85477 0.79098 0.78300 0.78003 1.19261 1.21078 1.19133 1.21506 0.93710 1.00778 0.97941 1.21379 0.96185 0.93565 1.02428 0.92641 0.84959 0.91715 0.89301 0.94051 0.92346 0.89558 0.88892 0.97184 0.89770 0.92689 0.97784 0.97523 1.03021 0.92861 0.88836 0.91990 0.90335 0.93762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 113.37 1.20 1.62 16 2 O -0.36 -7.81 10.47 -51.39 -0.54 -8.35 16 3 C 0.47 11.74 7.26 71.23 0.52 12.26 16 4 O -0.54 -16.90 15.73 21.97 0.35 -16.56 16 5 C -0.07 -1.54 2.63 -11.54 -0.03 -1.57 16 6 H 0.14 2.18 8.14 -2.38 -0.02 2.16 16 7 C -0.10 -2.59 5.13 30.59 0.16 -2.44 16 8 C -0.09 -2.49 5.09 30.59 0.16 -2.34 16 9 C -0.08 -2.62 2.20 -10.79 -0.02 -2.65 16 10 H 0.03 1.37 6.47 -2.39 -0.02 1.35 16 11 C 0.06 2.05 4.37 86.30 0.38 2.43 16 12 N -0.54 -22.90 4.14 -927.03 -3.84 -26.74 16 13 C 0.04 1.53 9.33 127.69 1.19 2.72 16 14 C 0.21 11.29 4.57 85.56 0.39 11.68 16 15 C -0.52 -29.82 8.53 25.60 0.22 -29.60 16 16 H 0.06 3.56 7.10 -2.91 -0.02 3.54 16 17 C 0.00 0.01 5.46 84.65 0.46 0.47 16 18 N -0.94 -57.58 13.29 21.45 0.28 -57.29 16 19 Si 0.97 44.77 29.54 68.60 2.03 46.79 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 23 C -0.10 -2.42 5.21 30.61 0.16 -2.26 16 24 C -0.10 -2.39 4.50 30.61 0.14 -2.25 16 25 H 0.05 0.96 8.13 -2.39 -0.02 0.94 16 26 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.06 0.98 8.13 -2.39 -0.02 0.96 16 28 H 0.09 1.92 8.11 -2.38 -0.02 1.90 16 29 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.06 1.96 7.74 -2.39 -0.02 1.94 16 31 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.09 2.49 7.88 -2.39 -0.02 2.47 16 33 H 0.01 0.36 8.05 -2.38 -0.02 0.34 16 34 H 0.08 2.46 7.98 -2.39 -0.02 2.44 16 35 H 0.05 2.22 6.89 -2.39 -0.02 2.21 16 36 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 37 H 0.01 0.39 6.35 -2.38 -0.02 0.38 16 38 H -0.05 -2.85 8.12 -2.39 -0.02 -2.87 16 39 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 40 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.08 1.74 8.10 -2.38 -0.02 1.73 16 43 H 0.04 1.32 8.10 -2.39 -0.02 1.30 16 Total: -1.00 -70.03 341.74 4.14 -65.89 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: 0.95 Total: 8.18 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: 4.91 Total: -11.93 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -3.55 Total: -84.03 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.19 Total: -24.91 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -70.03 4.14 -65.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208624840.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.545 kcal (2) G-P(sol) polarization free energy of solvation -70.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds