Wall clock time and date at job start Mon Mar 30 2020 00:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34225 * 116.99890 * 2 1 4 4 O 1.20825 * 120.00196 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00121 * 179.97438 * 3 2 1 6 6 H 1.09007 * 109.47043 * 59.99989 * 5 3 2 7 7 C 1.52997 * 109.47303 * 300.00197 * 5 3 2 8 8 C 1.52997 * 109.47449 * 180.02562 * 5 3 2 9 9 N 1.46898 * 109.47561 * 184.28084 * 8 5 3 10 10 C 1.46904 * 110.99994 * 72.40802 * 9 8 5 11 11 C 1.50698 * 109.47119 * 195.94399 * 10 9 8 12 12 H 1.07993 * 120.00410 * 5.08986 * 11 10 9 13 13 C 1.37884 * 119.99861 * 185.09386 * 11 10 9 14 14 N 1.31505 * 119.99759 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99775 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.47407 * 90.00335 * 15 13 11 17 17 H 1.48502 * 109.46848 * 210.00176 * 15 13 11 18 18 H 1.48497 * 109.47453 * 329.99817 * 15 13 11 19 19 C 1.46895 * 111.00513 * 196.36417 * 9 8 5 20 20 C 1.55243 * 110.57864 * 64.37716 * 19 9 8 21 21 C 1.54883 * 102.58846 * 203.34148 * 20 19 9 22 22 C 1.54263 * 104.31461 * 37.93022 * 21 20 19 23 23 C 1.53869 * 106.59997 * 336.32711 * 22 21 20 24 24 H 1.09000 * 109.47059 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47310 * 299.99692 * 1 2 3 26 26 H 1.08998 * 109.47097 * 59.99928 * 1 2 3 27 27 H 1.09002 * 109.46922 * 64.85875 * 7 5 3 28 28 H 1.08999 * 109.47439 * 184.85382 * 7 5 3 29 29 H 1.08997 * 109.47313 * 304.86267 * 7 5 3 30 30 H 1.08999 * 109.47426 * 64.27712 * 8 5 3 31 31 H 1.09005 * 109.46728 * 304.28145 * 8 5 3 32 32 H 1.08996 * 109.47151 * 315.94999 * 10 9 8 33 33 H 1.09009 * 109.46525 * 75.94320 * 10 9 8 34 34 H 0.97008 * 119.99916 * 180.02562 * 14 13 11 35 35 H 1.08997 * 110.43657 * 186.96244 * 19 9 8 36 36 H 1.08994 * 110.89764 * 85.04919 * 20 19 9 37 37 H 1.09002 * 110.76582 * 321.56995 * 20 19 9 38 38 H 1.09005 * 110.48768 * 279.19029 * 21 20 19 39 39 H 1.09003 * 110.48691 * 156.67570 * 21 20 19 40 40 H 1.09002 * 110.03219 * 95.60813 * 22 21 20 41 41 H 1.09003 * 110.03367 * 216.98897 * 22 21 20 42 42 H 1.09003 * 110.03937 * 119.28084 * 23 22 21 43 43 H 1.09007 * 110.03369 * 240.66488 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9564 0.7806 -0.8892 7 6 4.1129 0.5816 1.2501 8 6 4.0001 2.7421 0.0011 9 7 5.4634 2.8202 -0.1017 10 6 5.9161 2.4623 -1.4527 11 6 7.3945 2.1715 -1.4265 12 1 7.9270 2.1646 -0.4870 13 6 8.0675 1.9144 -2.6022 14 7 9.3575 1.6601 -2.5792 15 14 7.1463 1.9258 -4.2272 16 1 7.1730 3.2949 -4.8018 17 1 7.7954 0.9803 -5.1707 18 1 5.7385 1.5111 -4.0012 19 6 5.9476 4.1535 0.2798 20 6 5.6450 4.4365 1.7759 21 6 5.6401 5.9843 1.8324 22 6 4.9732 6.4122 0.5088 23 6 5.1686 5.2482 -0.4783 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.8778 -0.4819 1.2077 28 1 5.1940 0.7131 1.2951 29 1 3.6563 1.0195 2.1377 30 1 3.6751 3.2168 0.9269 31 1 3.5483 3.2548 -0.8481 32 1 5.3778 1.5781 -1.7939 33 1 5.7208 3.2915 -2.1328 34 1 9.8310 1.4796 -3.4064 35 1 7.0163 4.2407 0.0839 36 1 6.4284 4.0291 2.4149 37 1 4.6702 4.0368 2.0553 38 1 6.6592 6.3673 1.8872 39 1 5.0561 6.3332 2.6841 40 1 3.9100 6.5925 0.6676 41 1 5.4510 7.3132 0.1241 42 1 4.2003 4.8634 -0.7986 43 1 5.7412 5.5839 -1.3430 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208717455.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:04 Heat of formation + Delta-G solvation = -92.494288 kcal Electronic energy + Delta-G solvation = -21991.143645 eV Core-core repulsion = 18843.117634 eV Total energy + Delta-G solvation = -3148.026012 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.49987 -38.81982 -36.52792 -35.33418 -33.18039 -32.00081 -28.46704 -28.11733 -27.82633 -26.80132 -24.85194 -23.15769 -21.49790 -20.21894 -20.03642 -18.29122 -17.44389 -16.80863 -16.68739 -16.30482 -15.47027 -15.04543 -14.66896 -14.18893 -13.88085 -13.70343 -13.20156 -12.97806 -12.63517 -12.48820 -12.39859 -12.25012 -12.03987 -11.74327 -11.49108 -11.05550 -10.92546 -10.81142 -10.76535 -10.72508 -10.68490 -10.60471 -10.29516 -10.13928 -9.93984 -9.83534 -9.69868 -9.27990 -8.57004 -7.35887 -6.05590 -4.02128 2.32952 2.78113 3.26894 3.35239 3.36845 4.41177 4.61952 4.88545 5.01905 5.03087 5.06523 5.08573 5.16954 5.23522 5.26865 5.38159 5.47188 5.65921 5.76135 5.88356 5.89651 5.96908 6.01587 6.06492 6.11761 6.17586 6.22804 6.28212 6.35313 6.42453 6.43411 6.59058 6.66500 6.69959 6.79850 6.91835 7.00390 7.62178 7.82943 7.91292 8.04138 8.65585 9.05428 9.57046 11.07546 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.012193 B = 0.007509 C = 0.005369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.779387 B = 3728.122383 C = 5213.586069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.467 3.533 4 O -0.513 6.513 5 C -0.081 4.081 6 H 0.113 0.887 7 C -0.131 4.131 8 C 0.065 3.935 9 N -0.515 5.515 10 C 0.158 3.842 11 C -0.504 4.504 12 H 0.082 0.918 13 C 0.070 3.930 14 N -0.899 5.899 15 Si 0.870 3.130 16 H -0.278 1.278 17 H -0.286 1.286 18 H -0.269 1.269 19 C 0.094 3.906 20 C -0.118 4.118 21 C -0.124 4.124 22 C -0.118 4.118 23 C -0.163 4.163 24 H 0.098 0.902 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.095 0.905 29 H 0.048 0.952 30 H 0.077 0.923 31 H 0.037 0.963 32 H 0.025 0.975 33 H -0.011 1.011 34 H 0.263 0.737 35 H 0.102 0.898 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.064 0.936 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.743 1.420 7.070 15.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.310 3.690 4 O -0.401 6.401 5 C -0.100 4.100 6 H 0.131 0.869 7 C -0.188 4.188 8 C -0.064 4.064 9 N -0.237 5.237 10 C 0.032 3.968 11 C -0.543 4.543 12 H 0.100 0.900 13 C -0.132 4.132 14 N -0.538 5.538 15 Si 0.698 3.302 16 H -0.204 1.204 17 H -0.212 1.212 18 H -0.193 1.193 19 C -0.015 4.015 20 C -0.156 4.156 21 C -0.162 4.162 22 C -0.157 4.157 23 C -0.202 4.202 24 H 0.117 0.883 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.113 0.887 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.055 0.945 32 H 0.043 0.957 33 H 0.007 0.993 34 H 0.073 0.927 35 H 0.120 0.880 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.612 1.306 7.268 15.486 hybrid contribution -1.055 0.645 -1.761 2.152 sum -14.667 1.950 5.507 15.788 Atomic orbital electron populations 1.23216 0.77058 1.03377 1.02304 1.86547 1.22867 1.33864 1.84155 1.24172 0.92434 0.80985 0.71365 1.90627 1.67424 1.36394 1.45679 1.21112 0.85123 1.00244 1.03527 0.86887 1.21641 1.04086 0.99078 0.94031 1.21925 0.90670 0.92266 1.01495 1.61982 1.06605 1.25870 1.29229 1.20251 0.97555 0.94583 0.84388 1.21001 0.90898 1.47082 0.95279 0.89971 1.24879 0.94650 0.95048 0.98612 1.69886 1.07819 1.48594 1.27540 0.86943 0.80517 0.78158 0.84592 1.20410 1.21195 1.19340 1.22568 1.00407 0.85759 0.92761 1.22660 1.01540 0.94400 0.97011 1.22327 1.00454 0.96509 0.96913 1.22034 0.99915 0.98066 0.95637 1.22887 1.01191 0.97038 0.99104 0.88325 0.92116 0.92132 0.92390 0.88656 0.93254 0.90460 0.94521 0.95710 0.99339 0.92713 0.88019 0.91327 0.91619 0.91736 0.92339 0.92601 0.92447 0.91745 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.93 10.49 -39.24 -0.41 -5.34 16 3 C 0.47 7.32 7.26 36.00 0.26 7.58 16 4 O -0.51 -9.01 15.68 -18.75 -0.29 -9.31 16 5 C -0.08 -1.29 2.84 -91.78 -0.26 -1.55 16 6 H 0.11 1.92 6.46 -51.92 -0.34 1.58 16 7 C -0.13 -1.88 9.06 37.16 0.34 -1.54 16 8 C 0.06 1.12 2.57 -3.83 -0.01 1.11 16 9 N -0.51 -10.03 3.75 -225.87 -0.85 -10.87 16 10 C 0.16 3.65 3.56 -4.97 -0.02 3.64 16 11 C -0.50 -13.71 8.96 -34.44 -0.31 -14.02 16 12 H 0.08 2.44 8.00 -52.49 -0.42 2.02 16 13 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 14 N -0.90 -26.97 13.96 55.43 0.77 -26.20 16 15 Si 0.87 21.25 27.37 -169.99 -4.65 16.59 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.27 -6.31 6.69 56.52 0.38 -5.93 16 19 C 0.09 1.71 2.80 -65.86 -0.18 1.52 16 20 C -0.12 -1.78 6.41 -24.55 -0.16 -1.94 16 21 C -0.12 -1.64 6.82 -25.08 -0.17 -1.81 16 22 C -0.12 -1.65 6.80 -25.62 -0.17 -1.82 16 23 C -0.16 -2.74 5.40 -25.62 -0.14 -2.88 16 24 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.59 8.13 -51.93 -0.42 0.16 16 26 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.09 1.53 7.60 -51.93 -0.39 1.14 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.08 1.27 5.81 -51.93 -0.30 0.97 16 31 H 0.04 0.68 6.34 -51.93 -0.33 0.35 16 32 H 0.03 0.58 5.68 -51.93 -0.29 0.28 16 33 H -0.01 -0.26 6.51 -51.92 -0.34 -0.60 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.10 2.13 7.28 -51.93 -0.38 1.75 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.07 0.97 5.98 -51.93 -0.31 0.66 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.06 1.11 5.50 -51.93 -0.29 0.83 16 43 H 0.06 1.11 8.14 -51.92 -0.42 0.68 16 LS Contribution 333.64 15.07 5.03 5.03 Total: -1.00 -30.08 333.64 -7.45 -37.54 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -7.19 Total: 0.99 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: 0.14 Total: -8.42 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: -0.07 Total: -37.08 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.71 Total: -14.65 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.65 Total: 16.59 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.08 -7.45 -37.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208717455.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.958 kcal (2) G-P(sol) polarization free energy of solvation -30.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds