Wall clock time and date at job start Mon Mar 30 2020 00:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34225 * 116.99890 * 2 1 4 4 O 1.20825 * 120.00196 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00121 * 179.97438 * 3 2 1 6 6 H 1.09007 * 109.47043 * 59.99989 * 5 3 2 7 7 C 1.52997 * 109.47303 * 300.00197 * 5 3 2 8 8 C 1.52997 * 109.47449 * 180.02562 * 5 3 2 9 9 N 1.46898 * 109.47561 * 184.28084 * 8 5 3 10 10 C 1.46904 * 110.99994 * 72.40802 * 9 8 5 11 11 C 1.50698 * 109.47119 * 195.94399 * 10 9 8 12 12 H 1.07993 * 120.00410 * 5.08986 * 11 10 9 13 13 C 1.37884 * 119.99861 * 185.09386 * 11 10 9 14 14 N 1.31505 * 119.99759 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99775 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.47407 * 90.00335 * 15 13 11 17 17 H 1.48502 * 109.46848 * 210.00176 * 15 13 11 18 18 H 1.48497 * 109.47453 * 329.99817 * 15 13 11 19 19 C 1.46895 * 111.00513 * 196.36417 * 9 8 5 20 20 C 1.55243 * 110.57864 * 64.37716 * 19 9 8 21 21 C 1.54883 * 102.58846 * 203.34148 * 20 19 9 22 22 C 1.54263 * 104.31461 * 37.93022 * 21 20 19 23 23 C 1.53869 * 106.59997 * 336.32711 * 22 21 20 24 24 H 1.09000 * 109.47059 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47310 * 299.99692 * 1 2 3 26 26 H 1.08998 * 109.47097 * 59.99928 * 1 2 3 27 27 H 1.09002 * 109.46922 * 64.85875 * 7 5 3 28 28 H 1.08999 * 109.47439 * 184.85382 * 7 5 3 29 29 H 1.08997 * 109.47313 * 304.86267 * 7 5 3 30 30 H 1.08999 * 109.47426 * 64.27712 * 8 5 3 31 31 H 1.09005 * 109.46728 * 304.28145 * 8 5 3 32 32 H 1.08996 * 109.47151 * 315.94999 * 10 9 8 33 33 H 1.09009 * 109.46525 * 75.94320 * 10 9 8 34 34 H 0.97008 * 119.99916 * 180.02562 * 14 13 11 35 35 H 1.08997 * 110.43657 * 186.96244 * 19 9 8 36 36 H 1.08994 * 110.89764 * 85.04919 * 20 19 9 37 37 H 1.09002 * 110.76582 * 321.56995 * 20 19 9 38 38 H 1.09005 * 110.48768 * 279.19029 * 21 20 19 39 39 H 1.09003 * 110.48691 * 156.67570 * 21 20 19 40 40 H 1.09002 * 110.03219 * 95.60813 * 22 21 20 41 41 H 1.09003 * 110.03367 * 216.98897 * 22 21 20 42 42 H 1.09003 * 110.03937 * 119.28084 * 23 22 21 43 43 H 1.09007 * 110.03369 * 240.66488 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9564 0.7806 -0.8892 7 6 4.1129 0.5816 1.2501 8 6 4.0001 2.7421 0.0011 9 7 5.4634 2.8202 -0.1017 10 6 5.9161 2.4623 -1.4527 11 6 7.3945 2.1715 -1.4265 12 1 7.9270 2.1646 -0.4870 13 6 8.0675 1.9144 -2.6022 14 7 9.3575 1.6601 -2.5792 15 14 7.1463 1.9258 -4.2272 16 1 7.1730 3.2949 -4.8018 17 1 7.7954 0.9803 -5.1707 18 1 5.7385 1.5111 -4.0012 19 6 5.9476 4.1535 0.2798 20 6 5.6450 4.4365 1.7759 21 6 5.6401 5.9843 1.8324 22 6 4.9732 6.4122 0.5088 23 6 5.1686 5.2482 -0.4783 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.8778 -0.4819 1.2077 28 1 5.1940 0.7131 1.2951 29 1 3.6563 1.0195 2.1377 30 1 3.6751 3.2168 0.9269 31 1 3.5483 3.2548 -0.8481 32 1 5.3778 1.5781 -1.7939 33 1 5.7208 3.2915 -2.1328 34 1 9.8310 1.4796 -3.4064 35 1 7.0163 4.2407 0.0839 36 1 6.4284 4.0291 2.4149 37 1 4.6702 4.0368 2.0553 38 1 6.6592 6.3673 1.8872 39 1 5.0561 6.3332 2.6841 40 1 3.9100 6.5925 0.6676 41 1 5.4510 7.3132 0.1241 42 1 4.2003 4.8634 -0.7986 43 1 5.7412 5.5839 -1.3430 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208717455.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:04 Heat of formation + Delta-G solvation = -110.311041 kcal Electronic energy + Delta-G solvation = -21991.916238 eV Core-core repulsion = 18843.117634 eV Total energy + Delta-G solvation = -3148.798604 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.70371 -40.21458 -37.67437 -36.68862 -34.98295 -33.71495 -30.12004 -29.53477 -28.77980 -28.08520 -26.30069 -24.59100 -23.19688 -21.45688 -21.21284 -19.80484 -18.87376 -18.58561 -17.98374 -17.44568 -16.78721 -16.47573 -16.26333 -15.59992 -15.51103 -14.80945 -14.51334 -14.36607 -14.26498 -13.98812 -13.95335 -13.43392 -13.29500 -12.94003 -12.82636 -12.76968 -12.50394 -12.17336 -12.08602 -11.96057 -11.86285 -11.83451 -11.78314 -11.77381 -11.38629 -11.36162 -11.18741 -11.10897 -10.74627 -8.95335 -8.25432 -6.26248 1.11436 1.32374 1.34197 1.43775 1.69270 2.34153 3.08206 3.18908 3.64368 3.78194 3.84935 3.87197 4.01449 4.16244 4.29653 4.32838 4.37338 4.48808 4.55132 4.60703 4.69575 4.70240 4.75458 4.76275 4.84733 4.93283 4.99363 5.04297 5.07891 5.10430 5.13172 5.24133 5.29779 5.36291 5.44385 5.48599 5.55003 5.61153 6.05350 6.41347 6.63496 6.70867 6.80841 7.36695 8.91147 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.012193 B = 0.007509 C = 0.005369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.779387 B = 3728.122383 C = 5213.586069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.361 6.361 3 C 0.475 3.525 4 O -0.535 6.535 5 C -0.083 4.083 6 H 0.102 0.898 7 C -0.123 4.123 8 C 0.073 3.927 9 N -0.519 5.519 10 C 0.170 3.830 11 C -0.502 4.502 12 H 0.043 0.957 13 C 0.013 3.987 14 N -0.946 5.946 15 Si 0.934 3.066 16 H -0.273 1.273 17 H -0.281 1.281 18 H -0.252 1.252 19 C 0.086 3.914 20 C -0.110 4.110 21 C -0.118 4.118 22 C -0.113 4.113 23 C -0.161 4.161 24 H 0.133 0.867 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.027 0.973 32 H 0.029 0.971 33 H -0.016 1.016 34 H 0.265 0.735 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.356 1.629 7.530 18.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.277 6.277 3 C 0.319 3.681 4 O -0.424 6.424 5 C -0.102 4.102 6 H 0.120 0.880 7 C -0.180 4.180 8 C -0.055 4.055 9 N -0.241 5.241 10 C 0.043 3.957 11 C -0.540 4.540 12 H 0.061 0.939 13 C -0.184 4.184 14 N -0.587 5.587 15 Si 0.758 3.242 16 H -0.199 1.199 17 H -0.207 1.207 18 H -0.176 1.176 19 C -0.023 4.023 20 C -0.148 4.148 21 C -0.156 4.156 22 C -0.151 4.151 23 C -0.200 4.200 24 H 0.151 0.849 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.045 0.955 32 H 0.047 0.953 33 H 0.001 0.999 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -16.247 1.507 7.746 18.062 hybrid contribution -0.245 0.539 -1.826 1.920 sum -16.492 2.046 5.920 17.641 Atomic orbital electron populations 1.23576 0.74757 1.05767 1.02554 1.86522 1.25058 1.32553 1.83549 1.23882 0.92016 0.81269 0.70902 1.90619 1.67783 1.37167 1.46865 1.21049 0.86060 0.99272 1.03843 0.88015 1.21563 1.02623 1.00019 0.93832 1.21884 0.88649 0.93404 1.01598 1.61900 1.08362 1.27027 1.26846 1.19980 0.94870 0.94416 0.86465 1.21179 0.92981 1.46149 0.93732 0.93917 1.25696 0.95385 0.94864 1.02475 1.70030 1.09642 1.50361 1.28645 0.85915 0.79961 0.78392 0.79902 1.19889 1.20676 1.17555 1.22571 0.98436 0.85740 0.95528 1.22605 1.01793 0.96188 0.94214 1.22321 1.01088 0.94634 0.97508 1.22019 1.01118 0.96994 0.94987 1.22832 1.00226 0.97760 0.99177 0.84939 0.91607 0.92201 0.90908 0.90752 0.91786 0.89205 0.95526 0.95346 0.99855 0.92591 0.91838 0.91533 0.90735 0.91590 0.89683 0.91086 0.91427 0.92052 0.93742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 113.37 1.20 1.66 16 2 O -0.36 -9.08 10.49 -51.37 -0.54 -9.62 16 3 C 0.48 14.03 7.26 71.23 0.52 14.54 16 4 O -0.53 -17.80 15.68 21.97 0.34 -17.46 16 5 C -0.08 -2.55 2.84 -11.54 -0.03 -2.59 16 6 H 0.10 3.38 6.46 -2.38 -0.02 3.37 16 7 C -0.12 -3.37 9.06 71.98 0.65 -2.71 16 8 C 0.07 2.45 2.57 86.30 0.22 2.67 16 9 N -0.52 -20.46 3.75 -868.52 -3.25 -23.72 16 10 C 0.17 7.94 3.56 85.56 0.30 8.25 16 11 C -0.50 -28.31 8.96 25.60 0.23 -28.08 16 12 H 0.04 2.69 8.00 -2.91 -0.02 2.66 16 13 C 0.01 0.76 5.47 84.66 0.46 1.22 16 14 N -0.95 -58.55 13.96 21.45 0.30 -58.25 16 15 Si 0.93 44.12 27.37 68.60 1.88 46.00 16 16 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 17 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 18 H -0.25 -11.11 6.69 99.48 0.67 -10.45 16 19 C 0.09 3.17 2.80 46.12 0.13 3.30 16 20 C -0.11 -3.20 6.41 32.01 0.21 -2.99 16 21 C -0.12 -2.83 6.82 31.67 0.22 -2.62 16 22 C -0.11 -2.91 6.80 31.32 0.21 -2.69 16 23 C -0.16 -5.34 5.40 31.32 0.17 -5.17 16 24 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.07 1.10 8.13 -2.39 -0.02 1.08 16 26 H 0.06 1.07 8.13 -2.39 -0.02 1.05 16 27 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.07 2.37 7.60 -2.39 -0.02 2.35 16 29 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.09 2.81 5.81 -2.39 -0.01 2.79 16 31 H 0.03 0.96 6.34 -2.38 -0.02 0.95 16 32 H 0.03 1.32 5.68 -2.39 -0.01 1.31 16 33 H -0.02 -0.78 6.51 -2.38 -0.02 -0.79 16 34 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 35 H 0.06 2.81 7.28 -2.39 -0.02 2.79 16 36 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.07 2.04 5.98 -2.39 -0.01 2.02 16 38 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 39 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.06 2.07 5.50 -2.39 -0.01 2.06 16 43 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 Total: -1.00 -66.31 333.64 4.15 -62.16 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 0.94 Total: 16.10 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: 4.48 Total: -15.21 kcal Atomic # 7 Polarization: -79.02 SS G_CDS: -2.95 Total: -81.97 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.19 Total: -27.08 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.88 Total: 46.00 kcal Total: -66.31 4.15 -62.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208717455.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.150 kcal (2) G-P(sol) polarization free energy of solvation -66.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds