Wall clock time and date at job start Mon Mar 30 2020 00:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34227 * 116.99934 * 2 1 4 4 O 1.20827 * 120.00215 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99596 * 179.97438 * 3 2 1 6 6 H 1.08998 * 109.47521 * 300.00050 * 5 3 2 7 7 C 1.52998 * 109.47520 * 60.00327 * 5 3 2 8 8 C 1.53007 * 109.47147 * 180.02562 * 5 3 2 9 9 N 1.46897 * 109.47302 * 176.71511 * 8 5 3 10 10 C 1.46899 * 111.00266 * 174.12147 * 9 8 5 11 11 C 1.50698 * 109.47275 * 195.88843 * 10 9 8 12 12 H 1.07999 * 119.99730 * 5.01824 * 11 10 9 13 13 C 1.37880 * 120.00178 * 185.01219 * 11 10 9 14 14 N 1.31516 * 119.99448 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00139 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.46733 * 90.00479 * 15 13 11 17 17 H 1.48492 * 109.47078 * 210.00131 * 15 13 11 18 18 H 1.48498 * 109.47052 * 330.00708 * 15 13 11 19 19 C 1.46909 * 110.99632 * 298.07041 * 9 8 5 20 20 C 1.55236 * 110.46515 * 86.22438 * 19 9 8 21 21 C 1.54899 * 102.58367 * 203.39484 * 20 19 9 22 22 C 1.54257 * 104.31297 * 37.92600 * 21 20 19 23 23 C 1.53874 * 106.60314 * 336.32491 * 22 21 20 24 24 H 1.09002 * 109.46915 * 300.00302 * 1 2 3 25 25 H 1.09003 * 109.47171 * 59.99917 * 1 2 3 26 26 H 1.08996 * 109.47313 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47019 * 300.00348 * 7 5 3 28 28 H 1.08998 * 109.46950 * 59.99373 * 7 5 3 29 29 H 1.08995 * 109.47906 * 179.97438 * 7 5 3 30 30 H 1.08995 * 109.46997 * 56.71140 * 8 5 3 31 31 H 1.09000 * 109.46778 * 296.71368 * 8 5 3 32 32 H 1.09000 * 109.46822 * 315.88797 * 10 9 8 33 33 H 1.09000 * 109.47397 * 75.88374 * 10 9 8 34 34 H 0.97006 * 119.99434 * 179.97438 * 14 13 11 35 35 H 1.09009 * 110.43092 * 208.86778 * 19 9 8 36 36 H 1.08993 * 110.90154 * 85.10175 * 20 19 9 37 37 H 1.08994 * 110.76697 * 321.61655 * 20 19 9 38 38 H 1.09004 * 110.48027 * 279.18258 * 21 20 19 39 39 H 1.09001 * 110.48484 * 156.68059 * 21 20 19 40 40 H 1.09008 * 110.02877 * 95.61382 * 22 21 20 41 41 H 1.09003 * 110.03507 * 216.98769 * 22 21 20 42 42 H 1.09009 * 110.03195 * 119.28011 * 23 22 21 43 43 H 1.08994 * 110.03601 * 240.66426 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9557 0.7808 0.8908 7 6 4.1139 0.5810 -1.2483 8 6 4.0002 2.7420 0.0011 9 7 5.4650 2.8195 0.0810 10 6 5.9271 4.2071 -0.0563 11 6 7.4031 4.2173 -0.3601 12 1 7.9272 3.2872 -0.5231 13 6 8.0843 5.4140 -0.4301 14 7 7.4460 6.5465 -0.2312 15 14 9.9140 5.4266 -0.8060 16 1 10.1170 5.5103 -2.2747 17 1 10.5458 6.6001 -0.1513 18 1 10.5337 4.1792 -0.2910 19 6 5.9563 2.2222 1.3301 20 6 6.1519 0.6917 1.1596 21 6 6.0588 0.1752 2.6170 22 6 4.9602 1.0459 3.2607 23 6 4.8950 2.3475 2.4425 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.8047 -0.4643 -1.2483 28 1 3.7245 1.0749 -2.1385 29 1 5.2023 0.6383 -1.2482 30 1 3.5621 3.2501 0.8601 31 1 3.6606 3.2216 -0.9169 32 1 5.3856 4.6916 -0.8688 33 1 5.7439 4.7449 0.8739 34 1 7.9254 7.3884 -0.2801 35 1 6.8888 2.6958 1.6373 36 1 7.1300 0.4698 0.7329 37 1 5.3567 0.2662 0.5476 38 1 7.0086 0.3161 3.1330 39 1 5.7702 -0.8758 2.6315 40 1 4.0013 0.5293 3.2177 41 1 5.2183 1.2676 4.2963 42 1 3.9045 2.4625 2.0023 43 1 5.1211 3.2015 3.0808 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208717456.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:06 Heat of formation + Delta-G solvation = -74.945653 kcal Electronic energy + Delta-G solvation = -22271.131578 eV Core-core repulsion = 19123.866532 eV Total energy + Delta-G solvation = -3147.265046 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.68769 -39.10133 -36.44806 -34.85057 -33.51559 -32.00175 -28.62640 -27.92881 -27.51277 -26.66792 -24.91404 -23.07387 -21.56062 -20.35777 -19.97257 -18.79073 -17.30743 -16.80590 -16.28725 -16.15221 -15.73008 -15.10779 -14.62621 -14.03445 -13.87348 -13.51095 -13.25217 -12.91547 -12.75141 -12.45715 -12.27216 -12.05149 -11.76916 -11.64242 -11.42345 -11.04410 -10.92367 -10.83919 -10.80397 -10.72108 -10.56343 -10.52160 -10.26625 -10.12473 -9.89326 -9.72777 -9.61223 -9.22345 -8.40679 -7.20615 -6.00094 -4.01569 2.32613 2.76740 3.33450 3.39615 3.42931 4.43328 4.73820 4.90742 5.02020 5.04178 5.06510 5.08198 5.08921 5.21474 5.34771 5.37665 5.47406 5.56374 5.76263 5.88909 5.93477 5.95981 6.01881 6.06897 6.12194 6.20404 6.22364 6.31088 6.38989 6.41499 6.53086 6.54523 6.65965 6.74228 6.92103 7.27997 7.39916 7.82163 7.86879 8.12304 8.21398 8.55151 9.07228 9.62665 11.10300 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.022106 B = 0.005465 C = 0.004917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.326065 B = 5122.650060 C = 5693.250518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.360 6.360 3 C 0.463 3.537 4 O -0.508 6.508 5 C -0.095 4.095 6 H 0.125 0.875 7 C -0.138 4.138 8 C 0.064 3.936 9 N -0.523 5.523 10 C 0.193 3.807 11 C -0.503 4.503 12 H 0.064 0.936 13 C 0.055 3.945 14 N -0.899 5.899 15 Si 0.897 3.103 16 H -0.281 1.281 17 H -0.288 1.288 18 H -0.274 1.274 19 C 0.087 3.913 20 C -0.135 4.135 21 C -0.127 4.127 22 C -0.120 4.120 23 C -0.177 4.177 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.098 0.902 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.094 0.906 30 H 0.046 0.954 31 H 0.075 0.925 32 H 0.026 0.974 33 H -0.002 1.002 34 H 0.261 0.739 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.079 0.921 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.181 -14.652 3.278 17.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.277 6.277 3 C 0.306 3.694 4 O -0.395 6.395 5 C -0.114 4.114 6 H 0.142 0.858 7 C -0.195 4.195 8 C -0.064 4.064 9 N -0.246 5.246 10 C 0.068 3.932 11 C -0.542 4.542 12 H 0.082 0.918 13 C -0.146 4.146 14 N -0.538 5.538 15 Si 0.725 3.275 16 H -0.207 1.207 17 H -0.214 1.214 18 H -0.199 1.199 19 C -0.023 4.023 20 C -0.172 4.172 21 C -0.165 4.165 22 C -0.158 4.158 23 C -0.216 4.216 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.116 0.884 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.112 0.888 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.044 0.956 33 H 0.016 0.984 34 H 0.070 0.930 35 H 0.112 0.888 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.097 0.903 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.184 -14.393 2.871 17.314 hybrid contribution 0.328 0.813 0.563 1.042 sum -8.856 -13.580 3.434 16.572 Atomic orbital electron populations 1.23216 0.77056 1.03314 1.02421 1.86526 1.22882 1.33960 1.84325 1.24217 0.92479 0.81029 0.71686 1.90657 1.67335 1.36349 1.45173 1.21629 0.85333 1.00863 1.03551 0.85784 1.21771 1.03899 0.98844 0.94955 1.22013 0.90936 0.91743 1.01729 1.62241 1.05934 1.23295 1.33098 1.19750 0.95947 0.81392 0.96084 1.21144 0.93217 0.92650 1.47184 0.91756 1.24991 0.98451 0.95554 0.95643 1.69970 1.36143 0.97493 1.50232 0.86519 0.85169 0.77434 0.78402 1.20699 1.21437 1.19853 1.22587 0.97919 0.94203 0.87567 1.23136 1.02508 0.96103 0.95498 1.22364 0.98728 0.98414 0.96966 1.22059 0.98456 0.96188 0.99083 1.23152 1.02049 0.97524 0.98829 0.92117 0.92051 0.88368 0.92493 0.92486 0.88780 0.93649 0.90687 0.95603 0.98421 0.92984 0.88793 0.91453 0.89774 0.91855 0.92265 0.92725 0.92392 0.90290 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.65 10.47 -39.25 -0.41 -5.06 16 3 C 0.46 7.05 7.26 36.00 0.26 7.31 16 4 O -0.51 -9.09 15.70 -18.75 -0.29 -9.38 16 5 C -0.09 -1.42 1.70 -91.77 -0.16 -1.57 16 6 H 0.12 1.77 3.58 -51.93 -0.19 1.58 16 7 C -0.14 -1.87 7.98 37.16 0.30 -1.58 16 8 C 0.06 1.18 3.14 -3.82 -0.01 1.17 16 9 N -0.52 -10.68 3.84 -225.87 -0.87 -11.55 16 10 C 0.19 4.93 4.67 -4.98 -0.02 4.91 16 11 C -0.50 -13.80 8.36 -34.44 -0.29 -14.09 16 12 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 13 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 14 N -0.90 -26.62 13.29 55.43 0.74 -25.89 16 15 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 C 0.09 1.59 2.69 -65.86 -0.18 1.41 16 20 C -0.13 -2.01 5.52 -24.54 -0.14 -2.15 16 21 C -0.13 -1.62 6.81 -25.07 -0.17 -1.79 16 22 C -0.12 -1.59 6.23 -25.62 -0.16 -1.75 16 23 C -0.18 -2.89 5.35 -25.62 -0.14 -3.03 16 24 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 25 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 26 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.66 8.11 -51.93 -0.42 0.23 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.09 1.37 6.41 -51.93 -0.33 1.04 16 30 H 0.05 0.88 5.64 -51.93 -0.29 0.59 16 31 H 0.07 1.47 7.96 -51.93 -0.41 1.06 16 32 H 0.03 0.71 7.87 -51.93 -0.41 0.30 16 33 H 0.00 -0.06 8.05 -51.93 -0.42 -0.48 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.09 1.99 7.13 -51.92 -0.37 1.62 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.08 1.17 3.07 -51.93 -0.16 1.01 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.67 8.09 -51.92 -0.42 0.25 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.08 1.32 3.90 -51.92 -0.20 1.12 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 329.09 15.07 4.96 4.96 Total: -1.00 -30.27 329.09 -7.61 -37.88 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -6.97 Total: 0.92 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: 0.27 Total: -8.33 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: -0.13 Total: -37.44 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -0.71 Total: -14.45 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.27 -7.61 -37.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208717456.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.069 kcal (2) G-P(sol) polarization free energy of solvation -30.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds