Wall clock time and date at job start Mon Mar 30 2020 00:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34227 * 116.99934 * 2 1 4 4 O 1.20827 * 120.00215 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99596 * 179.97438 * 3 2 1 6 6 H 1.08998 * 109.47521 * 300.00050 * 5 3 2 7 7 C 1.52998 * 109.47520 * 60.00327 * 5 3 2 8 8 C 1.53007 * 109.47147 * 180.02562 * 5 3 2 9 9 N 1.46897 * 109.47302 * 176.71511 * 8 5 3 10 10 C 1.46899 * 111.00266 * 174.12147 * 9 8 5 11 11 C 1.50698 * 109.47275 * 195.88843 * 10 9 8 12 12 H 1.07999 * 119.99730 * 5.01824 * 11 10 9 13 13 C 1.37880 * 120.00178 * 185.01219 * 11 10 9 14 14 N 1.31516 * 119.99448 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00139 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.46733 * 90.00479 * 15 13 11 17 17 H 1.48492 * 109.47078 * 210.00131 * 15 13 11 18 18 H 1.48498 * 109.47052 * 330.00708 * 15 13 11 19 19 C 1.46909 * 110.99632 * 298.07041 * 9 8 5 20 20 C 1.55236 * 110.46515 * 86.22438 * 19 9 8 21 21 C 1.54899 * 102.58367 * 203.39484 * 20 19 9 22 22 C 1.54257 * 104.31297 * 37.92600 * 21 20 19 23 23 C 1.53874 * 106.60314 * 336.32491 * 22 21 20 24 24 H 1.09002 * 109.46915 * 300.00302 * 1 2 3 25 25 H 1.09003 * 109.47171 * 59.99917 * 1 2 3 26 26 H 1.08996 * 109.47313 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47019 * 300.00348 * 7 5 3 28 28 H 1.08998 * 109.46950 * 59.99373 * 7 5 3 29 29 H 1.08995 * 109.47906 * 179.97438 * 7 5 3 30 30 H 1.08995 * 109.46997 * 56.71140 * 8 5 3 31 31 H 1.09000 * 109.46778 * 296.71368 * 8 5 3 32 32 H 1.09000 * 109.46822 * 315.88797 * 10 9 8 33 33 H 1.09000 * 109.47397 * 75.88374 * 10 9 8 34 34 H 0.97006 * 119.99434 * 179.97438 * 14 13 11 35 35 H 1.09009 * 110.43092 * 208.86778 * 19 9 8 36 36 H 1.08993 * 110.90154 * 85.10175 * 20 19 9 37 37 H 1.08994 * 110.76697 * 321.61655 * 20 19 9 38 38 H 1.09004 * 110.48027 * 279.18258 * 21 20 19 39 39 H 1.09001 * 110.48484 * 156.68059 * 21 20 19 40 40 H 1.09008 * 110.02877 * 95.61382 * 22 21 20 41 41 H 1.09003 * 110.03507 * 216.98769 * 22 21 20 42 42 H 1.09009 * 110.03195 * 119.28011 * 23 22 21 43 43 H 1.08994 * 110.03601 * 240.66426 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9557 0.7808 0.8908 7 6 4.1139 0.5810 -1.2483 8 6 4.0002 2.7420 0.0011 9 7 5.4650 2.8195 0.0810 10 6 5.9271 4.2071 -0.0563 11 6 7.4031 4.2173 -0.3601 12 1 7.9272 3.2872 -0.5231 13 6 8.0843 5.4140 -0.4301 14 7 7.4460 6.5465 -0.2312 15 14 9.9140 5.4266 -0.8060 16 1 10.1170 5.5103 -2.2747 17 1 10.5458 6.6001 -0.1513 18 1 10.5337 4.1792 -0.2910 19 6 5.9563 2.2222 1.3301 20 6 6.1519 0.6917 1.1596 21 6 6.0588 0.1752 2.6170 22 6 4.9602 1.0459 3.2607 23 6 4.8950 2.3475 2.4425 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.8047 -0.4643 -1.2483 28 1 3.7245 1.0749 -2.1385 29 1 5.2023 0.6383 -1.2482 30 1 3.5621 3.2501 0.8601 31 1 3.6606 3.2216 -0.9169 32 1 5.3856 4.6916 -0.8688 33 1 5.7439 4.7449 0.8739 34 1 7.9254 7.3884 -0.2801 35 1 6.8888 2.6958 1.6373 36 1 7.1300 0.4698 0.7329 37 1 5.3567 0.2662 0.5476 38 1 7.0086 0.3161 3.1330 39 1 5.7702 -0.8758 2.6315 40 1 4.0013 0.5293 3.2177 41 1 5.2183 1.2676 4.2963 42 1 3.9045 2.4625 2.0023 43 1 5.1211 3.2015 3.0808 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208717456.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:06 Heat of formation + Delta-G solvation = -93.064099 kcal Electronic energy + Delta-G solvation = -22271.917252 eV Core-core repulsion = 19123.866532 eV Total energy + Delta-G solvation = -3148.050720 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.93135 -40.45103 -37.58956 -36.30585 -35.20764 -33.82069 -29.95765 -29.36727 -28.70212 -28.06037 -26.43943 -24.52426 -23.34707 -21.52429 -21.19950 -20.17989 -18.57306 -18.39073 -17.97029 -17.39416 -17.03398 -16.54484 -16.43193 -15.29877 -15.19996 -14.79876 -14.63720 -14.15248 -14.12576 -14.10370 -13.86153 -13.27415 -13.15362 -12.85939 -12.81091 -12.74936 -12.57660 -12.25534 -12.13702 -12.07804 -11.90284 -11.80420 -11.74867 -11.52398 -11.41923 -11.28333 -11.06274 -10.96015 -10.58905 -8.95068 -8.17826 -6.28240 1.12393 1.42092 1.43666 1.54671 1.68719 2.41829 3.14390 3.25641 3.62200 3.78821 3.85696 3.87715 3.96635 4.18061 4.28892 4.33466 4.34565 4.51363 4.57574 4.62801 4.71485 4.73942 4.75765 4.82200 4.89485 4.99683 5.01126 5.07666 5.12177 5.19385 5.22237 5.28973 5.30592 5.41566 5.44266 5.52404 5.60947 5.71250 6.08531 6.39112 6.58658 6.71160 6.88936 7.41549 8.92862 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.022106 B = 0.005465 C = 0.004917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.326065 B = 5122.650060 C = 5693.250518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.354 6.354 3 C 0.470 3.530 4 O -0.542 6.542 5 C -0.085 4.085 6 H 0.139 0.861 7 C -0.134 4.134 8 C 0.068 3.932 9 N -0.519 5.519 10 C 0.209 3.791 11 C -0.513 4.513 12 H 0.067 0.933 13 C -0.001 4.001 14 N -0.938 5.938 15 Si 0.970 3.030 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.261 1.261 19 C 0.078 3.922 20 C -0.127 4.127 21 C -0.119 4.119 22 C -0.114 4.114 23 C -0.175 4.175 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.137 0.863 27 H 0.088 0.912 28 H 0.050 0.950 29 H 0.085 0.915 30 H 0.032 0.968 31 H 0.054 0.946 32 H -0.005 1.005 33 H -0.037 1.037 34 H 0.263 0.737 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.099 0.901 38 H 0.064 0.936 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.987 -17.991 3.616 20.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.270 6.270 3 C 0.314 3.686 4 O -0.432 6.432 5 C -0.104 4.104 6 H 0.156 0.844 7 C -0.191 4.191 8 C -0.060 4.060 9 N -0.241 5.241 10 C 0.082 3.918 11 C -0.552 4.552 12 H 0.085 0.915 13 C -0.198 4.198 14 N -0.579 5.579 15 Si 0.794 3.206 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.185 1.185 19 C -0.031 4.031 20 C -0.165 4.165 21 C -0.157 4.157 22 C -0.152 4.152 23 C -0.214 4.214 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.155 0.845 27 H 0.107 0.893 28 H 0.069 0.931 29 H 0.103 0.897 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.013 0.987 33 H -0.019 1.019 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.117 0.883 38 H 0.083 0.917 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -9.000 -17.783 3.215 20.188 hybrid contribution 0.160 1.859 0.467 1.923 sum -8.840 -15.924 3.682 18.581 Atomic orbital electron populations 1.23582 0.74937 1.05882 1.02358 1.86497 1.24825 1.32068 1.83573 1.24074 0.92326 0.81307 0.70911 1.90656 1.67996 1.37661 1.46898 1.21465 0.85877 0.97996 1.05030 0.84358 1.21764 1.03155 1.00427 0.93743 1.21939 0.89449 0.94593 1.00069 1.62208 1.07290 1.19773 1.34842 1.19375 0.95372 0.83949 0.93072 1.21420 0.94007 0.92861 1.46883 0.91503 1.25936 1.03574 0.95036 0.95275 1.70115 1.38248 0.98209 1.51326 0.85374 0.78957 0.77838 0.78398 1.19908 1.21120 1.18529 1.22657 0.96818 0.96428 0.87153 1.23092 1.02919 0.92754 0.97702 1.22361 0.98679 0.99924 0.94722 1.22050 0.99893 0.94245 0.98974 1.23097 1.00836 0.99059 0.98359 0.92172 0.92273 0.84456 0.89321 0.93135 0.89665 0.95052 0.92754 0.98711 1.01933 0.92858 0.92383 0.91695 0.88336 0.91742 0.89008 0.90683 0.91318 0.90741 0.94233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 113.37 1.20 1.62 16 2 O -0.35 -8.12 10.47 -51.39 -0.54 -8.65 16 3 C 0.47 13.71 7.26 71.23 0.52 14.22 16 4 O -0.54 -19.45 15.70 21.96 0.34 -19.10 16 5 C -0.08 -2.45 1.70 -11.54 -0.02 -2.47 16 6 H 0.14 3.61 3.58 -2.39 -0.01 3.60 16 7 C -0.13 -3.39 7.98 71.98 0.57 -2.82 16 8 C 0.07 2.60 3.14 86.31 0.27 2.87 16 9 N -0.52 -22.12 3.84 -868.51 -3.34 -25.46 16 10 C 0.21 11.38 4.67 85.56 0.40 11.78 16 11 C -0.51 -29.19 8.36 25.60 0.21 -28.98 16 12 H 0.07 3.69 7.81 -2.91 -0.02 3.67 16 13 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 14 N -0.94 -57.68 13.29 21.45 0.28 -57.40 16 15 Si 0.97 44.62 29.54 68.60 2.03 46.65 16 16 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 17 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 18 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 19 C 0.08 2.93 2.69 46.11 0.12 3.05 16 20 C -0.13 -3.55 5.52 32.01 0.18 -3.37 16 21 C -0.12 -2.64 6.81 31.67 0.22 -2.42 16 22 C -0.11 -2.72 6.23 31.31 0.19 -2.53 16 23 C -0.17 -5.77 5.35 31.32 0.17 -5.60 16 24 H 0.06 1.03 8.13 -2.39 -0.02 1.01 16 25 H 0.06 1.03 8.13 -2.39 -0.02 1.01 16 26 H 0.14 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.09 1.71 8.11 -2.39 -0.02 1.69 16 28 H 0.05 1.34 8.14 -2.39 -0.02 1.33 16 29 H 0.08 2.35 6.41 -2.39 -0.02 2.33 16 30 H 0.03 1.30 5.64 -2.39 -0.01 1.28 16 31 H 0.05 2.27 7.96 -2.39 -0.02 2.25 16 32 H -0.01 -0.31 7.87 -2.39 -0.02 -0.33 16 33 H -0.04 -2.24 8.05 -2.39 -0.02 -2.26 16 34 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 35 H 0.06 2.58 7.13 -2.38 -0.02 2.56 16 36 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.10 2.46 3.07 -2.39 -0.01 2.45 16 38 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.07 1.53 8.09 -2.38 -0.02 1.51 16 41 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.07 2.53 3.90 -2.38 -0.01 2.52 16 43 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -68.94 329.09 4.26 -64.68 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.99 Total: 13.52 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: 4.49 Total: -14.24 kcal Atomic # 7 Polarization: -79.80 SS G_CDS: -3.05 Total: -82.85 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -0.19 Total: -27.76 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -68.94 4.26 -64.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208717456.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.384 kcal (2) G-P(sol) polarization free energy of solvation -68.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds