Wall clock time and date at job start Mon Mar 30 2020 01:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.45200 * 109.47316 * 2 1 4 4 C 1.34232 * 117.00457 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99867 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00136 * 180.02562 * 4 3 2 7 7 H 1.09001 * 109.47238 * 300.00207 * 6 4 3 8 8 C 1.52998 * 109.47240 * 59.99775 * 6 4 3 9 9 C 1.52998 * 109.47515 * 180.02562 * 8 6 4 10 10 C 1.53009 * 109.46787 * 300.00146 * 9 8 6 11 11 H 1.08994 * 109.47041 * 299.99905 * 10 9 8 12 12 C 1.53002 * 109.46902 * 179.97438 * 10 9 8 13 13 N 1.46502 * 109.46886 * 64.99887 * 12 10 9 14 14 C 1.46496 * 120.00262 * 269.99577 * 13 12 10 15 15 C 1.36939 * 119.99548 * 90.00070 * 13 12 10 16 16 H 1.07999 * 120.00272 * 20.39176 * 15 13 12 17 17 C 1.38810 * 119.99558 * 200.38970 * 15 13 12 18 18 N 1.31622 * 120.00561 * 15.05998 * 17 15 13 19 19 Si 1.86806 * 119.99805 * 195.06145 * 17 15 13 20 20 H 1.48500 * 109.47244 * 85.00313 * 19 17 15 21 21 H 1.48507 * 109.46705 * 205.00019 * 19 17 15 22 22 H 1.48494 * 109.46958 * 325.00014 * 19 17 15 23 23 C 1.52996 * 109.46902 * 59.99868 * 10 9 8 24 24 C 1.52996 * 109.47053 * 179.97438 * 6 4 3 25 25 H 1.09003 * 109.47104 * 299.99771 * 1 2 3 26 26 H 1.09001 * 109.47568 * 60.00265 * 1 2 3 27 27 H 1.09002 * 109.47234 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47104 * 240.00229 * 2 1 3 29 29 H 1.09001 * 109.47395 * 120.00261 * 2 1 3 30 30 H 1.08999 * 109.47003 * 300.00127 * 8 6 4 31 31 H 1.09001 * 109.47195 * 59.99533 * 8 6 4 32 32 H 1.08998 * 109.47768 * 179.97438 * 9 8 6 33 33 H 1.09001 * 109.47346 * 59.99533 * 9 8 6 34 34 H 1.08993 * 109.46862 * 184.99833 * 12 10 9 35 35 H 1.08995 * 109.47066 * 304.99901 * 12 10 9 36 36 H 1.09001 * 109.46898 * 95.23472 * 14 13 12 37 37 H 1.08994 * 109.47529 * 215.23259 * 14 13 12 38 38 H 1.09003 * 109.46721 * 335.23628 * 14 13 12 39 39 H 0.96998 * 120.00274 * 179.97438 * 18 17 15 40 40 H 1.09007 * 109.46669 * 180.02562 * 23 10 9 41 41 H 1.09001 * 109.47873 * 60.00034 * 23 10 9 42 42 H 1.09001 * 109.47548 * 300.00361 * 24 6 4 43 43 H 1.09005 * 109.46989 * 60.00105 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.5843 3.4701 -0.8895 8 6 3.4497 3.6837 1.2499 9 6 4.0339 5.0977 1.2502 10 6 5.5619 5.0182 1.2491 11 1 5.8986 4.4858 2.1386 12 6 6.1461 6.4323 1.2488 13 7 5.7939 7.1064 2.5009 14 6 4.5548 7.8827 2.5915 15 6 6.6231 7.0110 3.5865 16 1 7.6595 6.7387 3.4522 17 6 6.1314 7.2642 4.8596 18 7 4.8323 7.3029 5.0679 19 14 7.3135 7.5503 6.2776 20 1 7.7179 8.9789 6.3043 21 1 6.6454 7.2010 7.5570 22 1 8.5165 6.6984 6.0986 23 6 6.0328 4.2720 -0.0008 24 6 5.4485 2.8574 -0.0001 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.3612 3.7407 1.2504 31 1 3.7859 3.1510 2.1394 32 1 3.6980 5.6296 2.1403 33 1 3.6972 5.6302 0.3606 34 1 7.2309 6.3771 1.1585 35 1 5.7395 6.9931 0.4073 36 1 3.7658 7.2596 3.0125 37 1 4.7149 8.7491 3.2331 38 1 4.2618 8.2167 1.5961 39 1 4.4888 7.4795 5.9576 40 1 7.1214 4.2150 -0.0013 41 1 5.6961 4.8044 -0.8904 42 1 5.7846 2.3248 0.8896 43 1 5.7844 2.3256 -0.8904 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209003428.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:23 Heat of formation + Delta-G solvation = -92.922910 kcal Electronic energy + Delta-G solvation = -21433.177393 eV Core-core repulsion = 18285.132795 eV Total energy + Delta-G solvation = -3148.044598 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.66224 -38.30409 -36.61658 -35.23979 -32.33348 -31.66557 -30.51754 -29.94714 -26.44819 -25.61175 -23.80855 -22.46467 -22.25228 -20.92853 -19.92186 -19.31346 -17.59114 -16.64101 -16.54502 -16.41104 -14.90364 -14.78140 -14.16832 -13.93664 -13.72555 -13.57931 -13.43465 -13.06200 -12.84273 -12.58748 -12.10419 -12.03203 -11.91033 -11.74616 -11.49991 -11.24856 -10.89713 -10.84214 -10.70366 -10.64670 -10.56321 -10.52137 -10.27860 -10.01884 -9.98658 -9.78457 -9.54491 -9.43125 -8.45982 -6.68753 -5.66680 -3.08725 2.24063 2.65316 3.42298 3.48746 3.49400 4.56041 4.60821 4.72444 4.79962 4.85997 4.94652 5.06310 5.26966 5.41039 5.49499 5.51215 5.56044 5.57472 5.72488 5.75457 5.77764 5.84873 5.90506 5.98921 6.21259 6.30300 6.36062 6.41729 6.44690 6.50854 6.60880 6.73301 6.81959 6.84634 7.09826 7.23505 7.43040 7.77889 7.79249 7.87736 8.45968 9.30744 9.95542 10.43737 11.38685 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.025081 B = 0.004103 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.122653 B = 6821.992003 C = 7130.477780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.357 6.357 4 C 0.467 3.533 5 O -0.513 6.513 6 C -0.076 4.076 7 H 0.105 0.895 8 C -0.107 4.107 9 C -0.107 4.107 10 C -0.110 4.110 11 H 0.072 0.928 12 C 0.157 3.843 13 N -0.602 5.602 14 C 0.164 3.836 15 C -0.250 4.250 16 H 0.068 0.932 17 C 0.000 4.000 18 N -0.908 5.908 19 Si 0.901 3.099 20 H -0.289 1.289 21 H -0.292 1.292 22 H -0.281 1.281 23 C -0.112 4.112 24 C -0.100 4.100 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.051 0.949 34 H 0.041 0.959 35 H 0.035 0.965 36 H 0.032 0.968 37 H 0.039 0.961 38 H -0.004 1.004 39 H 0.251 0.749 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.069 0.931 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.704 -10.223 -11.976 17.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.274 6.274 4 C 0.310 3.690 5 O -0.401 6.401 6 C -0.095 4.095 7 H 0.123 0.877 8 C -0.144 4.144 9 C -0.145 4.145 10 C -0.132 4.132 11 H 0.090 0.910 12 C 0.030 3.970 13 N -0.324 5.324 14 C 0.019 3.981 15 C -0.379 4.379 16 H 0.085 0.915 17 C -0.198 4.198 18 N -0.554 5.554 19 Si 0.731 3.269 20 H -0.216 1.216 21 H -0.219 1.219 22 H -0.207 1.207 23 C -0.150 4.150 24 C -0.137 4.137 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.058 0.942 38 H 0.015 0.985 39 H 0.061 0.939 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.605 -10.483 -11.810 17.117 hybrid contribution 0.513 -0.228 0.901 1.061 sum -6.093 -10.711 -10.909 16.458 Atomic orbital electron populations 1.21799 0.92695 1.02801 1.03634 1.22992 0.95363 0.80674 1.02397 1.86541 1.24958 1.31932 1.83988 1.24116 0.80236 0.93105 0.71523 1.90634 1.60458 1.43392 1.45594 1.21211 0.97073 0.88721 1.02517 0.87724 1.21547 1.00536 0.97308 0.95043 1.21595 0.95767 0.94209 1.02880 1.21909 0.95268 0.99248 0.96742 0.90950 1.20856 0.97264 0.90189 0.88714 1.43961 1.23810 1.55818 1.08841 1.20834 0.88198 0.94985 0.94085 1.19212 0.91187 1.42455 0.85088 0.91452 1.24918 0.95602 1.02106 0.97159 1.70067 1.10520 1.53907 1.20911 0.86323 0.80324 0.78076 0.82132 1.21620 1.21878 1.20671 1.21609 1.00127 0.94135 0.99120 1.21444 0.91286 0.98227 1.02782 0.91319 0.91518 0.90411 0.91486 0.91339 0.91347 0.91642 0.89261 0.93070 0.94020 0.94660 0.94998 0.94240 0.98542 0.93905 0.91812 0.92378 0.91187 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.29 37.15 0.38 -0.76 16 2 C 0.06 0.62 6.19 37.15 0.23 0.85 16 3 O -0.36 -4.65 10.12 -39.26 -0.40 -5.05 16 4 C 0.47 6.71 7.26 36.00 0.26 6.97 16 5 O -0.51 -8.53 15.73 -18.75 -0.29 -8.82 16 6 C -0.08 -1.02 2.63 -91.78 -0.24 -1.27 16 7 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 8 C -0.11 -1.59 5.13 -26.73 -0.14 -1.73 16 9 C -0.11 -1.82 4.77 -26.73 -0.13 -1.94 16 10 C -0.11 -1.96 2.40 -90.62 -0.22 -2.18 16 11 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 12 C 0.16 3.14 5.18 -4.04 -0.02 3.12 16 13 N -0.60 -14.82 2.75 -181.13 -0.50 -15.32 16 14 C 0.16 3.95 7.87 59.84 0.47 4.42 16 15 C -0.25 -6.82 9.68 -15.06 -0.15 -6.97 16 16 H 0.07 1.82 7.86 -52.49 -0.41 1.41 16 17 C 0.00 0.00 5.06 -17.43 -0.09 -0.09 16 18 N -0.91 -26.25 10.67 55.49 0.59 -25.66 16 19 Si 0.90 22.00 29.58 -169.99 -5.03 16.97 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 C -0.11 -1.59 5.20 -26.71 -0.14 -1.73 16 24 C -0.10 -1.39 4.50 -26.71 -0.12 -1.51 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 29 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 30 H 0.07 0.95 8.11 -51.93 -0.42 0.53 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.09 1.83 5.55 -51.93 -0.29 1.54 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.04 0.83 8.03 -51.93 -0.42 0.41 16 35 H 0.04 0.65 7.86 -51.93 -0.41 0.24 16 36 H 0.03 0.82 5.91 -51.93 -0.31 0.51 16 37 H 0.04 1.04 7.23 -51.93 -0.38 0.66 16 38 H 0.00 -0.08 7.83 -51.93 -0.41 -0.49 16 39 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 43 H 0.06 0.82 8.10 -51.93 -0.42 0.40 16 LS Contribution 338.76 15.07 5.11 5.11 Total: -1.00 -30.31 338.76 -8.08 -38.38 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -7.66 Total: -2.79 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: 0.11 Total: -2.82 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 0.09 Total: -40.98 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.69 Total: -13.87 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.31 -8.08 -38.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209003428.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.541 kcal (2) G-P(sol) polarization free energy of solvation -30.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds