Wall clock time and date at job start Mon Mar 30 2020 01:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.45200 * 109.47316 * 2 1 4 4 C 1.34232 * 117.00457 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99867 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00136 * 180.02562 * 4 3 2 7 7 H 1.09001 * 109.47238 * 300.00207 * 6 4 3 8 8 C 1.52998 * 109.47240 * 59.99775 * 6 4 3 9 9 C 1.52998 * 109.47515 * 180.02562 * 8 6 4 10 10 C 1.53009 * 109.46787 * 300.00146 * 9 8 6 11 11 H 1.08994 * 109.47041 * 299.99905 * 10 9 8 12 12 C 1.53002 * 109.46902 * 179.97438 * 10 9 8 13 13 N 1.46502 * 109.46886 * 64.99887 * 12 10 9 14 14 C 1.46496 * 120.00262 * 269.99577 * 13 12 10 15 15 C 1.36939 * 119.99548 * 90.00070 * 13 12 10 16 16 H 1.07999 * 120.00272 * 20.39176 * 15 13 12 17 17 C 1.38810 * 119.99558 * 200.38970 * 15 13 12 18 18 N 1.31622 * 120.00561 * 15.05998 * 17 15 13 19 19 Si 1.86806 * 119.99805 * 195.06145 * 17 15 13 20 20 H 1.48500 * 109.47244 * 85.00313 * 19 17 15 21 21 H 1.48507 * 109.46705 * 205.00019 * 19 17 15 22 22 H 1.48494 * 109.46958 * 325.00014 * 19 17 15 23 23 C 1.52996 * 109.46902 * 59.99868 * 10 9 8 24 24 C 1.52996 * 109.47053 * 179.97438 * 6 4 3 25 25 H 1.09003 * 109.47104 * 299.99771 * 1 2 3 26 26 H 1.09001 * 109.47568 * 60.00265 * 1 2 3 27 27 H 1.09002 * 109.47234 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47104 * 240.00229 * 2 1 3 29 29 H 1.09001 * 109.47395 * 120.00261 * 2 1 3 30 30 H 1.08999 * 109.47003 * 300.00127 * 8 6 4 31 31 H 1.09001 * 109.47195 * 59.99533 * 8 6 4 32 32 H 1.08998 * 109.47768 * 179.97438 * 9 8 6 33 33 H 1.09001 * 109.47346 * 59.99533 * 9 8 6 34 34 H 1.08993 * 109.46862 * 184.99833 * 12 10 9 35 35 H 1.08995 * 109.47066 * 304.99901 * 12 10 9 36 36 H 1.09001 * 109.46898 * 95.23472 * 14 13 12 37 37 H 1.08994 * 109.47529 * 215.23259 * 14 13 12 38 38 H 1.09003 * 109.46721 * 335.23628 * 14 13 12 39 39 H 0.96998 * 120.00274 * 179.97438 * 18 17 15 40 40 H 1.09007 * 109.46669 * 180.02562 * 23 10 9 41 41 H 1.09001 * 109.47873 * 60.00034 * 23 10 9 42 42 H 1.09001 * 109.47548 * 300.00361 * 24 6 4 43 43 H 1.09005 * 109.46989 * 60.00105 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.5843 3.4701 -0.8895 8 6 3.4497 3.6837 1.2499 9 6 4.0339 5.0977 1.2502 10 6 5.5619 5.0182 1.2491 11 1 5.8986 4.4858 2.1386 12 6 6.1461 6.4323 1.2488 13 7 5.7939 7.1064 2.5009 14 6 4.5548 7.8827 2.5915 15 6 6.6231 7.0110 3.5865 16 1 7.6595 6.7387 3.4522 17 6 6.1314 7.2642 4.8596 18 7 4.8323 7.3029 5.0679 19 14 7.3135 7.5503 6.2776 20 1 7.7179 8.9789 6.3043 21 1 6.6454 7.2010 7.5570 22 1 8.5165 6.6984 6.0986 23 6 6.0328 4.2720 -0.0008 24 6 5.4485 2.8574 -0.0001 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.3612 3.7407 1.2504 31 1 3.7859 3.1510 2.1394 32 1 3.6980 5.6296 2.1403 33 1 3.6972 5.6302 0.3606 34 1 7.2309 6.3771 1.1585 35 1 5.7395 6.9931 0.4073 36 1 3.7658 7.2596 3.0125 37 1 4.7149 8.7491 3.2331 38 1 4.2618 8.2167 1.5961 39 1 4.4888 7.4795 5.9576 40 1 7.1214 4.2150 -0.0013 41 1 5.6961 4.8044 -0.8904 42 1 5.7846 2.3248 0.8896 43 1 5.7844 2.3256 -0.8904 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209003428.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:23 Heat of formation + Delta-G solvation = -108.469689 kcal Electronic energy + Delta-G solvation = -21433.851552 eV Core-core repulsion = 18285.132795 eV Total energy + Delta-G solvation = -3148.718757 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.77116 -39.60724 -37.77986 -36.96147 -33.87653 -32.72549 -31.84843 -31.45647 -28.15082 -27.45481 -24.98162 -23.65972 -23.46519 -22.43532 -21.29745 -20.59355 -18.69838 -18.61010 -17.59669 -17.53266 -16.76570 -16.10935 -15.53085 -15.34507 -15.22145 -15.01140 -14.61084 -14.30645 -14.21589 -13.76555 -13.38881 -13.27295 -13.01068 -12.93976 -12.89162 -12.72527 -12.52890 -12.49638 -12.23419 -12.12689 -12.00831 -11.93399 -11.71394 -11.65333 -11.52582 -11.25721 -11.03762 -10.81620 -10.53008 -8.69823 -7.77700 -5.20897 1.12015 1.46824 1.47959 1.55533 1.68103 2.54595 3.34738 3.55685 3.72430 3.74113 3.86042 3.99145 4.07157 4.18828 4.24280 4.33532 4.40072 4.48878 4.57000 4.62066 4.67036 4.82125 4.86325 4.91347 4.94692 5.02049 5.10248 5.12599 5.15655 5.20125 5.28671 5.30128 5.38875 5.42276 5.46874 5.65531 5.67389 5.78268 5.88528 6.38968 6.69547 7.22129 7.97419 8.38613 9.25418 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.025081 B = 0.004103 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.122653 B = 6821.992003 C = 7130.477780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.050 3.950 3 O -0.360 6.360 4 C 0.469 3.531 5 O -0.540 6.540 6 C -0.070 4.070 7 H 0.135 0.865 8 C -0.098 4.098 9 C -0.100 4.100 10 C -0.102 4.102 11 H 0.030 0.970 12 C 0.152 3.848 13 N -0.617 5.617 14 C 0.179 3.821 15 C -0.256 4.256 16 H 0.067 0.933 17 C -0.053 4.053 18 N -0.936 5.936 19 Si 0.960 3.040 20 H -0.286 1.286 21 H -0.297 1.297 22 H -0.273 1.273 23 C -0.100 4.100 24 C -0.096 4.096 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.100 0.900 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.040 0.960 32 H 0.048 0.952 33 H 0.076 0.924 34 H 0.042 0.958 35 H 0.061 0.939 36 H 0.011 0.989 37 H 0.008 0.992 38 H 0.030 0.970 39 H 0.245 0.755 40 H 0.068 0.932 41 H 0.086 0.914 42 H 0.046 0.954 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.914 -10.630 -14.101 18.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.023 4.023 3 O -0.277 6.277 4 C 0.314 3.686 5 O -0.430 6.430 6 C -0.089 4.089 7 H 0.153 0.847 8 C -0.136 4.136 9 C -0.138 4.138 10 C -0.123 4.123 11 H 0.049 0.951 12 C 0.027 3.973 13 N -0.340 5.340 14 C 0.034 3.966 15 C -0.387 4.387 16 H 0.085 0.915 17 C -0.248 4.248 18 N -0.583 5.583 19 Si 0.789 3.211 20 H -0.213 1.213 21 H -0.224 1.224 22 H -0.198 1.198 23 C -0.138 4.138 24 C -0.133 4.133 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.119 0.881 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.029 0.971 37 H 0.026 0.974 38 H 0.049 0.951 39 H 0.054 0.946 40 H 0.087 0.913 41 H 0.104 0.896 42 H 0.065 0.935 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.810 -10.899 -13.966 18.979 hybrid contribution 0.556 -0.139 1.512 1.617 sum -6.254 -11.038 -12.454 17.777 Atomic orbital electron populations 1.21821 0.90380 1.04372 1.03719 1.23295 0.97189 0.79402 1.02413 1.86535 1.24082 1.33601 1.83475 1.24222 0.80579 0.93042 0.70786 1.90624 1.61137 1.44259 1.46983 1.21187 0.96668 0.88410 1.02629 0.84701 1.21406 1.01105 0.96038 0.95050 1.21465 0.95103 0.95167 1.02040 1.21702 0.95799 0.97782 0.97042 0.95119 1.21063 0.97598 0.91268 0.87394 1.44184 1.23500 1.56659 1.09624 1.20584 0.87629 0.93343 0.95043 1.19509 0.91649 1.41368 0.86175 0.91528 1.25614 0.96980 1.02810 0.99429 1.70226 1.11931 1.55298 1.20858 0.85380 0.78676 0.77913 0.79081 1.21343 1.22414 1.19771 1.21508 1.00502 0.93926 0.97894 1.21385 0.91681 0.97854 1.02419 0.91680 0.90926 0.88113 0.90928 0.91962 0.90159 0.94152 0.93290 0.90543 0.93994 0.92087 0.97064 0.97363 0.95136 0.94572 0.91282 0.89570 0.93531 0.90312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 10.29 71.98 0.74 -1.15 16 2 C 0.05 0.97 6.19 71.98 0.45 1.42 16 3 O -0.36 -8.80 10.12 -51.44 -0.52 -9.32 16 4 C 0.47 12.81 7.26 71.23 0.52 13.33 16 5 O -0.54 -17.49 15.73 21.96 0.35 -17.14 16 6 C -0.07 -1.73 2.63 -11.54 -0.03 -1.76 16 7 H 0.14 2.58 8.14 -2.39 -0.02 2.56 16 8 C -0.10 -2.85 5.13 30.59 0.16 -2.70 16 9 C -0.10 -3.30 4.77 30.60 0.15 -3.15 16 10 C -0.10 -3.55 2.40 -10.79 -0.03 -3.57 16 11 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 12 C 0.15 5.87 5.18 86.38 0.45 6.32 16 13 N -0.62 -30.43 2.75 -726.96 -2.00 -32.43 16 14 C 0.18 8.69 7.87 127.77 1.01 9.70 16 15 C -0.26 -14.18 9.68 84.03 0.81 -13.37 16 16 H 0.07 3.61 7.86 -2.91 -0.02 3.59 16 17 C -0.05 -3.03 5.06 84.86 0.43 -2.60 16 18 N -0.94 -55.64 10.67 21.65 0.23 -55.41 16 19 Si 0.96 45.92 29.58 68.60 2.03 47.95 16 20 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 21 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 22 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 23 C -0.10 -2.59 5.20 30.61 0.16 -2.43 16 24 C -0.10 -2.48 4.50 30.61 0.14 -2.34 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.07 1.32 8.13 -2.39 -0.02 1.30 16 29 H 0.06 1.27 8.13 -2.39 -0.02 1.25 16 30 H 0.08 2.13 8.11 -2.39 -0.02 2.11 16 31 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.05 2.03 5.55 -2.39 -0.01 2.02 16 33 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.04 1.60 8.03 -2.39 -0.02 1.58 16 35 H 0.06 2.05 7.86 -2.39 -0.02 2.03 16 36 H 0.01 0.59 5.91 -2.39 -0.01 0.58 16 37 H 0.01 0.41 7.23 -2.39 -0.02 0.40 16 38 H 0.03 1.24 7.83 -2.39 -0.02 1.22 16 39 H 0.25 14.28 8.31 -92.71 -0.77 13.50 16 40 H 0.07 1.73 8.14 -2.38 -0.02 1.72 16 41 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.05 1.42 8.10 -2.39 -0.02 1.40 16 43 H 0.08 1.84 8.10 -2.38 -0.02 1.82 16 Total: -1.00 -66.73 338.76 5.98 -60.74 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: 0.95 Total: 7.92 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: 4.94 Total: -2.31 kcal Atomic # 7 Polarization: -86.07 SS G_CDS: -1.77 Total: -87.84 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.18 Total: -26.46 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -66.73 5.98 -60.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209003428.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.726 kcal (2) G-P(sol) polarization free energy of solvation -66.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds