Wall clock time and date at job start Mon Mar 30 2020 01:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45203 * 109.47391 * 2 1 4 4 C 1.34224 * 116.99922 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00221 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.99972 * 180.02562 * 4 3 2 7 7 C 1.52994 * 109.47218 * 179.97438 * 6 4 3 8 8 N 1.46896 * 109.47061 * 173.57522 * 7 6 4 9 9 C 1.46905 * 111.00151 * 185.33868 * 8 7 6 10 10 C 1.50693 * 109.47491 * 164.02771 * 9 8 7 11 11 H 1.08006 * 119.99701 * 4.81885 * 10 9 8 12 12 C 1.37876 * 120.00263 * 184.81729 * 10 9 8 13 13 N 1.31513 * 119.99786 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00255 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47144 * 59.99945 * 14 12 10 16 16 H 1.48493 * 109.47402 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.46910 * 300.00388 * 14 12 10 18 18 C 1.46896 * 111.00043 * 61.38578 * 8 7 6 19 19 C 1.54262 * 110.03496 * 23.19167 * 18 8 7 20 20 C 1.54967 * 104.16097 * 217.14151 * 19 18 8 21 21 C 1.54889 * 102.77947 * 37.88498 * 20 19 18 22 22 C 1.53876 * 110.03148 * 265.97159 * 18 8 7 23 23 H 1.09012 * 109.46839 * 299.99864 * 1 2 3 24 24 H 1.08996 * 109.47513 * 59.99556 * 1 2 3 25 25 H 1.09000 * 109.47591 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46412 * 240.00079 * 2 1 3 27 27 H 1.08996 * 109.47513 * 120.00444 * 2 1 3 28 28 H 1.08998 * 109.47231 * 59.99486 * 6 4 3 29 29 H 1.09000 * 109.46475 * 299.99388 * 6 4 3 30 30 H 1.09002 * 109.47056 * 53.57571 * 7 6 4 31 31 H 1.09000 * 109.47170 * 293.57473 * 7 6 4 32 32 H 1.09008 * 109.46647 * 284.03194 * 9 8 7 33 33 H 1.09000 * 109.47097 * 44.02704 * 9 8 7 34 34 H 0.96999 * 119.99555 * 179.97438 * 13 12 10 35 35 H 1.09003 * 110.01935 * 144.58668 * 18 8 7 36 36 H 1.09002 * 110.48535 * 335.78449 * 19 18 8 37 37 H 1.08996 * 110.48580 * 98.42667 * 19 18 8 38 38 H 1.09005 * 110.71446 * 279.57051 * 20 19 18 39 39 H 1.09001 * 110.92521 * 156.29791 * 20 19 18 40 40 H 1.08999 * 110.48348 * 203.41068 * 21 20 19 41 41 H 1.08999 * 110.59835 * 80.81712 * 21 20 19 42 42 H 1.08994 * 110.03525 * 238.57156 * 22 18 8 43 43 H 1.08999 * 110.03125 * 0.02562 * 22 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9208 2.9373 0.0000 7 6 5.4487 2.8572 -0.0001 8 7 6.0097 4.2060 -0.1546 9 6 7.4720 4.1561 -0.2861 10 6 7.9730 5.4707 -0.8261 11 1 7.2856 6.2901 -0.9759 12 6 9.3090 5.6275 -1.1290 13 7 10.1459 4.6295 -0.9470 14 14 9.9301 7.2573 -1.7977 15 1 9.6572 8.3333 -0.8114 16 1 11.3922 7.1675 -2.0412 17 1 9.2345 7.5665 -3.0728 18 6 5.6110 5.0731 0.9621 19 6 5.2483 4.2166 2.1928 20 6 4.0535 4.9646 2.8365 21 6 3.2574 5.4627 1.6047 22 6 4.3459 5.8655 0.5885 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8932 -0.5139 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.5853 3.4690 0.8904 29 1 3.5845 3.4699 -0.8896 30 1 5.7795 2.2292 -0.8273 31 1 5.7901 2.4273 0.9416 32 1 7.9185 3.9707 0.6909 33 1 7.7481 3.3535 -0.9700 34 1 11.0857 4.7397 -1.1604 35 1 6.4213 5.7587 1.2100 36 1 4.9498 3.2143 1.8855 37 1 6.0883 4.1699 2.8859 38 1 4.4027 5.8050 3.4364 39 1 3.4488 4.2868 3.4390 40 1 2.6450 6.3247 1.8694 41 1 2.6357 4.6635 1.2012 42 1 4.5421 6.9355 0.6558 43 1 4.0277 5.6063 -0.4213 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209035309.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:52 Heat of formation + Delta-G solvation = -77.863772 kcal Electronic energy + Delta-G solvation = -21706.297005 eV Core-core repulsion = 18558.905421 eV Total energy + Delta-G solvation = -3147.391585 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.55550 -39.14247 -36.59444 -34.65890 -32.72631 -31.98926 -30.83138 -28.39579 -27.53519 -26.08252 -24.00809 -22.59781 -21.52404 -20.58527 -20.44489 -18.66878 -17.44617 -16.85100 -16.44083 -16.13350 -15.65984 -15.10178 -14.62687 -14.35941 -13.89794 -13.61766 -13.18180 -13.09071 -12.81809 -12.64387 -12.33246 -11.95125 -11.83013 -11.79779 -11.61169 -11.06821 -10.88984 -10.82509 -10.72514 -10.68258 -10.61081 -10.43103 -10.35926 -10.24693 -9.99293 -9.85316 -9.67342 -9.23008 -8.40291 -7.23056 -5.99479 -4.00837 2.35035 2.71034 3.35260 3.39466 3.42249 4.43556 4.68280 4.75399 4.82338 4.94899 4.99377 5.05714 5.09340 5.20252 5.31235 5.35463 5.41839 5.57596 5.60083 5.68972 5.76572 5.83746 5.87952 5.92949 6.01346 6.06053 6.17510 6.25477 6.29595 6.42093 6.47069 6.52051 6.60928 6.76338 6.87897 7.28716 7.37096 7.82949 7.88195 8.12747 8.24652 8.55421 9.06566 9.62962 11.11146 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.023181 B = 0.004661 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.582721 B = 6005.271087 C = 6690.894467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.362 6.362 4 C 0.461 3.539 5 O -0.510 6.510 6 C -0.134 4.134 7 C 0.063 3.937 8 N -0.527 5.527 9 C 0.193 3.807 10 C -0.504 4.504 11 H 0.063 0.937 12 C 0.055 3.945 13 N -0.899 5.899 14 Si 0.898 3.102 15 H -0.278 1.278 16 H -0.289 1.289 17 H -0.276 1.276 18 C 0.083 3.917 19 C -0.177 4.177 20 C -0.123 4.123 21 C -0.135 4.135 22 C -0.116 4.116 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.126 0.874 29 H 0.112 0.888 30 H 0.076 0.924 31 H 0.042 0.958 32 H -0.009 1.009 33 H 0.032 0.968 34 H 0.261 0.739 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.094 -4.169 5.005 19.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 O -0.280 6.280 4 C 0.305 3.695 5 O -0.397 6.397 6 C -0.172 4.172 7 C -0.065 4.065 8 N -0.250 5.250 9 C 0.069 3.931 10 C -0.543 4.543 11 H 0.081 0.919 12 C -0.146 4.146 13 N -0.539 5.539 14 Si 0.726 3.274 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.202 1.202 18 C -0.026 4.026 19 C -0.215 4.215 20 C -0.161 4.161 21 C -0.172 4.172 22 C -0.154 4.154 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.096 0.904 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.143 0.857 29 H 0.130 0.870 30 H 0.095 0.905 31 H 0.060 0.940 32 H 0.008 0.992 33 H 0.051 0.949 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.856 -4.334 4.526 18.923 hybrid contribution 0.876 0.269 0.355 0.983 sum -16.980 -4.065 4.881 18.129 Atomic orbital electron populations 1.21798 0.92816 1.02767 1.03488 1.22976 0.95203 0.80761 1.02510 1.86522 1.25145 1.31937 1.84358 1.24123 0.80151 0.93352 0.71921 1.90661 1.60289 1.43460 1.45303 1.22209 0.97795 0.89826 1.07331 1.21904 0.90445 0.92933 1.01229 1.62379 1.14855 1.07401 1.40372 1.19767 0.79469 0.98223 0.95685 1.21109 0.92833 0.97971 1.42394 0.91877 1.24983 0.96886 0.96803 0.95950 1.69953 1.03767 1.31172 1.48960 0.86569 0.77482 0.83857 0.79539 1.20321 1.21441 1.20188 1.22311 0.97355 0.94951 0.87994 1.23499 0.98248 1.01052 0.98724 1.22461 0.96778 0.99647 0.97172 1.22595 0.97961 1.00397 0.96243 1.22294 0.94328 0.99544 0.99251 0.91539 0.91471 0.90443 0.91334 0.91419 0.85672 0.86987 0.90510 0.94036 0.99164 0.94944 0.92902 0.89418 0.89584 0.92031 0.91661 0.92375 0.92116 0.91356 0.92154 0.90656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.29 37.16 0.38 -0.72 16 2 C 0.06 0.62 6.19 37.16 0.23 0.85 16 3 O -0.36 -4.72 10.22 -39.24 -0.40 -5.12 16 4 C 0.46 6.98 7.96 36.01 0.29 7.27 16 5 O -0.51 -9.13 15.64 -18.75 -0.29 -9.43 16 6 C -0.13 -1.98 4.00 -27.88 -0.11 -2.10 16 7 C 0.06 1.17 3.79 -3.83 -0.01 1.15 16 8 N -0.53 -10.96 4.27 -226.75 -0.97 -11.93 16 9 C 0.19 5.00 4.62 -4.98 -0.02 4.98 16 10 C -0.50 -14.02 8.43 -34.44 -0.29 -14.31 16 11 H 0.06 1.73 7.77 -52.48 -0.41 1.32 16 12 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 13 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 14 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 C 0.08 1.51 2.69 -66.60 -0.18 1.34 16 19 C -0.18 -2.77 5.28 -25.03 -0.13 -2.90 16 20 C -0.12 -1.55 6.72 -24.70 -0.17 -1.72 16 21 C -0.13 -1.64 6.12 -25.07 -0.15 -1.80 16 22 C -0.12 -1.76 5.77 -25.61 -0.15 -1.91 16 23 H 0.07 0.47 8.14 -51.92 -0.42 0.04 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 27 H 0.07 0.70 8.13 -51.93 -0.42 0.27 16 28 H 0.13 1.70 2.24 -51.93 -0.12 1.58 16 29 H 0.11 1.58 7.68 -51.93 -0.40 1.18 16 30 H 0.08 1.53 7.73 -51.93 -0.40 1.13 16 31 H 0.04 0.79 6.03 -51.93 -0.31 0.48 16 32 H -0.01 -0.26 8.05 -51.92 -0.42 -0.68 16 33 H 0.03 0.91 7.88 -51.93 -0.41 0.50 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.09 1.84 7.12 -51.93 -0.37 1.47 16 36 H 0.09 1.35 3.45 -51.93 -0.18 1.18 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.78 6.03 -51.93 -0.31 0.47 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.07 1.17 7.15 -51.93 -0.37 0.80 16 LS Contribution 332.44 15.07 5.01 5.01 Total: -1.00 -30.70 332.44 -8.41 -39.12 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -7.06 Total: 0.21 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -0.42 Total: -8.41 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: -0.23 Total: -38.02 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -0.69 Total: -14.55 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.70 -8.41 -39.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209035309.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.747 kcal (2) G-P(sol) polarization free energy of solvation -30.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds