Wall clock time and date at job start Mon Mar 30 2020 01:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45203 * 109.47391 * 2 1 4 4 C 1.34224 * 116.99922 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00221 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.99972 * 180.02562 * 4 3 2 7 7 C 1.52994 * 109.47218 * 179.97438 * 6 4 3 8 8 N 1.46896 * 109.47061 * 173.57522 * 7 6 4 9 9 C 1.46905 * 111.00151 * 185.33868 * 8 7 6 10 10 C 1.50693 * 109.47491 * 164.02771 * 9 8 7 11 11 H 1.08006 * 119.99701 * 4.81885 * 10 9 8 12 12 C 1.37876 * 120.00263 * 184.81729 * 10 9 8 13 13 N 1.31513 * 119.99786 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00255 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47144 * 59.99945 * 14 12 10 16 16 H 1.48493 * 109.47402 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.46910 * 300.00388 * 14 12 10 18 18 C 1.46896 * 111.00043 * 61.38578 * 8 7 6 19 19 C 1.54262 * 110.03496 * 23.19167 * 18 8 7 20 20 C 1.54967 * 104.16097 * 217.14151 * 19 18 8 21 21 C 1.54889 * 102.77947 * 37.88498 * 20 19 18 22 22 C 1.53876 * 110.03148 * 265.97159 * 18 8 7 23 23 H 1.09012 * 109.46839 * 299.99864 * 1 2 3 24 24 H 1.08996 * 109.47513 * 59.99556 * 1 2 3 25 25 H 1.09000 * 109.47591 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46412 * 240.00079 * 2 1 3 27 27 H 1.08996 * 109.47513 * 120.00444 * 2 1 3 28 28 H 1.08998 * 109.47231 * 59.99486 * 6 4 3 29 29 H 1.09000 * 109.46475 * 299.99388 * 6 4 3 30 30 H 1.09002 * 109.47056 * 53.57571 * 7 6 4 31 31 H 1.09000 * 109.47170 * 293.57473 * 7 6 4 32 32 H 1.09008 * 109.46647 * 284.03194 * 9 8 7 33 33 H 1.09000 * 109.47097 * 44.02704 * 9 8 7 34 34 H 0.96999 * 119.99555 * 179.97438 * 13 12 10 35 35 H 1.09003 * 110.01935 * 144.58668 * 18 8 7 36 36 H 1.09002 * 110.48535 * 335.78449 * 19 18 8 37 37 H 1.08996 * 110.48580 * 98.42667 * 19 18 8 38 38 H 1.09005 * 110.71446 * 279.57051 * 20 19 18 39 39 H 1.09001 * 110.92521 * 156.29791 * 20 19 18 40 40 H 1.08999 * 110.48348 * 203.41068 * 21 20 19 41 41 H 1.08999 * 110.59835 * 80.81712 * 21 20 19 42 42 H 1.08994 * 110.03525 * 238.57156 * 22 18 8 43 43 H 1.08999 * 110.03125 * 0.02562 * 22 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9208 2.9373 0.0000 7 6 5.4487 2.8572 -0.0001 8 7 6.0097 4.2060 -0.1546 9 6 7.4720 4.1561 -0.2861 10 6 7.9730 5.4707 -0.8261 11 1 7.2856 6.2901 -0.9759 12 6 9.3090 5.6275 -1.1290 13 7 10.1459 4.6295 -0.9470 14 14 9.9301 7.2573 -1.7977 15 1 9.6572 8.3333 -0.8114 16 1 11.3922 7.1675 -2.0412 17 1 9.2345 7.5665 -3.0728 18 6 5.6110 5.0731 0.9621 19 6 5.2483 4.2166 2.1928 20 6 4.0535 4.9646 2.8365 21 6 3.2574 5.4627 1.6047 22 6 4.3459 5.8655 0.5885 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8932 -0.5139 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.5853 3.4690 0.8904 29 1 3.5845 3.4699 -0.8896 30 1 5.7795 2.2292 -0.8273 31 1 5.7901 2.4273 0.9416 32 1 7.9185 3.9707 0.6909 33 1 7.7481 3.3535 -0.9700 34 1 11.0857 4.7397 -1.1604 35 1 6.4213 5.7587 1.2100 36 1 4.9498 3.2143 1.8855 37 1 6.0883 4.1699 2.8859 38 1 4.4027 5.8050 3.4364 39 1 3.4488 4.2868 3.4390 40 1 2.6450 6.3247 1.8694 41 1 2.6357 4.6635 1.2012 42 1 4.5421 6.9355 0.6558 43 1 4.0277 5.6063 -0.4213 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209035309.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:51 Heat of formation + Delta-G solvation = -96.289007 kcal Electronic energy + Delta-G solvation = -21707.095984 eV Core-core repulsion = 18558.905421 eV Total energy + Delta-G solvation = -3148.190563 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.79308 -40.49084 -37.74064 -36.22732 -34.65944 -33.07312 -32.11575 -29.59810 -29.24665 -27.66626 -25.40550 -23.74268 -23.25670 -21.79906 -21.55780 -20.07106 -18.67890 -18.43264 -17.97562 -17.58511 -16.94211 -16.55957 -16.32920 -15.45934 -15.36167 -14.86414 -14.67642 -14.26750 -14.15282 -13.85079 -13.63291 -13.54263 -13.16757 -12.84427 -12.75044 -12.71198 -12.49540 -12.35976 -12.17043 -12.03548 -11.84534 -11.80796 -11.60537 -11.54116 -11.50538 -11.40387 -11.15718 -11.04429 -10.59694 -8.98314 -8.18919 -6.29410 1.13892 1.41064 1.44869 1.52461 1.62879 2.41127 3.11899 3.26142 3.72231 3.80946 3.83107 3.90987 4.01321 4.07983 4.10886 4.22381 4.36551 4.41460 4.60854 4.63618 4.69672 4.70946 4.81532 4.88667 4.90601 4.94574 4.95191 5.04319 5.14002 5.15073 5.20704 5.22444 5.33129 5.42172 5.46817 5.52517 5.58000 5.68628 6.06508 6.42353 6.58900 6.72281 6.86472 7.39973 8.91902 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.023181 B = 0.004661 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.582721 B = 6005.271087 C = 6690.894467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.049 3.951 3 O -0.356 6.356 4 C 0.469 3.531 5 O -0.544 6.544 6 C -0.121 4.121 7 C 0.066 3.934 8 N -0.527 5.527 9 C 0.209 3.791 10 C -0.517 4.517 11 H 0.066 0.934 12 C -0.001 4.001 13 N -0.938 5.938 14 Si 0.971 3.029 15 H -0.266 1.266 16 H -0.285 1.285 17 H -0.267 1.267 18 C 0.076 3.924 19 C -0.176 4.176 20 C -0.115 4.115 21 C -0.124 4.124 22 C -0.112 4.112 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.099 0.901 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.145 0.855 29 H 0.126 0.874 30 H 0.053 0.947 31 H 0.033 0.967 32 H -0.040 1.040 33 H -0.002 1.002 34 H 0.264 0.736 35 H 0.051 0.949 36 H 0.086 0.914 37 H 0.045 0.955 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.062 0.938 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.021 -2.881 5.378 21.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.024 4.024 3 O -0.273 6.273 4 C 0.313 3.687 5 O -0.434 6.434 6 C -0.157 4.157 7 C -0.062 4.062 8 N -0.251 5.251 9 C 0.082 3.918 10 C -0.556 4.556 11 H 0.084 0.916 12 C -0.199 4.199 13 N -0.578 5.578 14 Si 0.795 3.205 15 H -0.191 1.191 16 H -0.211 1.211 17 H -0.192 1.192 18 C -0.032 4.032 19 C -0.214 4.214 20 C -0.153 4.153 21 C -0.161 4.161 22 C -0.150 4.150 23 H 0.091 0.909 24 H 0.088 0.912 25 H 0.118 0.882 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.162 0.838 29 H 0.143 0.857 30 H 0.071 0.929 31 H 0.051 0.949 32 H -0.023 1.023 33 H 0.016 0.984 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.104 0.896 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.080 0.920 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.835 -3.038 4.909 21.620 hybrid contribution 1.772 -0.211 0.260 1.803 sum -19.063 -3.249 5.169 20.017 Atomic orbital electron populations 1.21819 0.89983 1.04390 1.03916 1.23326 0.97367 0.79315 1.02421 1.86507 1.23425 1.33675 1.83650 1.24017 0.80795 0.92796 0.71089 1.90660 1.61268 1.44461 1.47044 1.22028 0.94520 0.90338 1.08839 1.21826 0.93320 0.91237 0.99798 1.62338 1.11432 1.09031 1.42272 1.19389 0.82839 0.96556 0.92969 1.21409 0.93317 0.98533 1.42297 0.91599 1.25949 0.97076 1.00748 0.96100 1.70100 1.04126 1.33572 1.50032 0.85414 0.76832 0.79082 0.79160 1.19086 1.21061 1.19193 1.22400 0.97867 0.94599 0.88368 1.23445 0.99440 1.01022 0.97509 1.22459 0.95353 0.99862 0.97579 1.22562 0.97033 1.01890 0.94647 1.22235 0.93516 0.99028 1.00223 0.90930 0.91172 0.88232 0.91714 0.91412 0.83795 0.85651 0.92870 0.94899 1.02281 0.98363 0.92772 0.93027 0.89610 0.93628 0.91111 0.89934 0.89473 0.89936 0.91957 0.90854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 10.29 71.98 0.74 -0.95 16 2 C 0.05 0.94 6.19 71.98 0.45 1.39 16 3 O -0.36 -8.54 10.22 -51.36 -0.52 -9.07 16 4 C 0.47 13.74 7.96 71.24 0.57 14.31 16 5 O -0.54 -19.67 15.64 21.97 0.34 -19.33 16 6 C -0.12 -3.43 4.00 29.85 0.12 -3.31 16 7 C 0.07 2.54 3.79 86.30 0.33 2.87 16 8 N -0.53 -22.82 4.27 -871.30 -3.72 -26.54 16 9 C 0.21 11.51 4.62 85.55 0.39 11.90 16 10 C -0.52 -29.77 8.43 25.60 0.22 -29.55 16 11 H 0.07 3.67 7.77 -2.91 -0.02 3.65 16 12 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 13 N -0.94 -57.95 13.29 21.45 0.28 -57.67 16 14 Si 0.97 44.89 29.54 68.60 2.03 46.92 16 15 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 16 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 17 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 18 C 0.08 2.82 2.69 45.64 0.12 2.94 16 19 C -0.18 -5.46 5.28 31.69 0.17 -5.29 16 20 C -0.11 -2.56 6.72 31.91 0.21 -2.34 16 21 C -0.12 -2.55 6.12 31.67 0.19 -2.36 16 22 C -0.11 -3.19 5.77 31.32 0.18 -3.01 16 23 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 24 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.06 1.29 8.13 -2.38 -0.02 1.27 16 27 H 0.07 1.30 8.13 -2.39 -0.02 1.28 16 28 H 0.14 3.55 2.24 -2.39 -0.01 3.55 16 29 H 0.13 3.29 7.68 -2.39 -0.02 3.28 16 30 H 0.05 2.26 7.73 -2.39 -0.02 2.24 16 31 H 0.03 1.32 6.03 -2.39 -0.01 1.30 16 32 H -0.04 -2.42 8.05 -2.38 -0.02 -2.44 16 33 H 0.00 -0.11 7.88 -2.39 -0.02 -0.13 16 34 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 35 H 0.05 2.26 7.12 -2.39 -0.02 2.25 16 36 H 0.09 2.67 3.45 -2.39 -0.01 2.66 16 37 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 39 H 0.08 1.50 8.14 -2.39 -0.02 1.49 16 40 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.08 1.50 6.03 -2.39 -0.01 1.48 16 42 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.07 2.13 7.15 -2.39 -0.02 2.12 16 Total: -1.00 -69.63 332.44 3.54 -66.09 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 0.98 Total: 12.59 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: 4.15 Total: -13.00 kcal Atomic # 7 Polarization: -80.77 SS G_CDS: -3.44 Total: -84.21 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.18 Total: -28.40 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -69.63 3.54 -66.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209035309.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.195 kcal (2) G-P(sol) polarization free energy of solvation -69.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds