Wall clock time and date at job start Mon Mar 30 2020 01:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35495 * 126.98057 * 2 1 4 4 N 1.30523 * 107.30912 * 180.22964 * 3 2 1 5 5 N 1.28604 * 109.66974 * 359.77278 * 4 3 2 6 6 C 1.30526 * 109.67322 * 0.02562 * 5 4 3 7 7 C 1.50697 * 126.34297 * 179.97438 * 6 5 4 8 8 O 1.42895 * 109.47133 * 90.02434 * 7 6 5 9 9 C 1.42898 * 113.99886 * 179.97438 * 8 7 6 10 10 H 1.09003 * 109.47569 * 29.99580 * 9 8 7 11 11 C 1.50705 * 109.47221 * 269.99876 * 9 8 7 12 12 H 1.07997 * 120.00091 * 119.99761 * 11 9 8 13 13 C 1.37888 * 119.99684 * 300.00256 * 11 9 8 14 14 N 1.31508 * 120.00126 * 359.97438 * 13 11 9 15 15 Si 1.86795 * 119.99495 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47279 * 60.00129 * 15 13 11 17 17 H 1.48500 * 109.46833 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47543 * 299.99793 * 15 13 11 19 19 C 1.53000 * 109.47389 * 150.00148 * 9 8 7 20 20 N 1.46902 * 109.46844 * 292.79173 * 19 9 8 21 21 C 1.46898 * 109.47425 * 63.49950 * 20 19 9 22 22 C 1.46909 * 109.46776 * 303.49846 * 20 19 9 23 23 C 1.46899 * 109.47288 * 183.50328 * 20 19 9 24 24 H 1.09005 * 109.46842 * 270.15062 * 1 2 3 25 25 H 1.08992 * 109.47366 * 30.15124 * 1 2 3 26 26 H 1.09002 * 109.47189 * 150.15137 * 1 2 3 27 27 H 1.08006 * 126.34497 * 0.02562 * 3 2 1 28 28 H 1.08998 * 109.47018 * 330.02132 * 7 6 5 29 29 H 1.09006 * 109.46989 * 210.02137 * 7 6 5 30 30 H 0.97001 * 120.00396 * 179.97438 * 14 13 11 31 31 H 1.08992 * 109.47795 * 172.79042 * 19 9 8 32 32 H 1.09003 * 109.47411 * 52.78129 * 19 9 8 33 33 H 1.09001 * 109.47085 * 289.39082 * 21 20 19 34 34 H 1.09000 * 109.47018 * 49.39165 * 21 20 19 35 35 H 1.09000 * 109.47110 * 169.39167 * 21 20 19 36 36 H 1.08998 * 109.46825 * 180.02562 * 22 20 19 37 37 H 1.08998 * 109.47154 * 300.00188 * 22 20 19 38 38 H 1.08999 * 109.46749 * 60.00422 * 22 20 19 39 39 H 1.09004 * 109.47092 * 299.99855 * 23 20 19 40 40 H 1.09007 * 109.47266 * 59.99554 * 23 20 19 41 41 H 1.08997 * 109.47479 * 179.97438 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5091 0.6430 -0.0050 5 7 3.5091 -0.6430 -0.0033 6 6 2.2800 -1.0824 0.0023 7 6 1.8477 -2.5260 0.0055 8 8 1.7162 -2.9810 1.3537 9 6 1.3074 -4.3453 1.4694 10 1 1.6719 -4.9081 0.6100 11 6 -0.1972 -4.4168 1.5152 12 1 -0.7348 -4.9701 0.7594 13 6 -0.8876 -3.7756 2.5219 14 7 -0.2329 -3.1021 3.4425 15 14 -2.7526 -3.8636 2.5782 16 1 -3.1779 -5.2814 2.6982 17 1 -3.2491 -3.0976 3.7495 18 1 -3.3134 -3.2823 1.3321 19 6 1.8856 -4.9438 2.7533 20 7 3.3473 -5.0328 2.6371 21 6 3.9118 -3.6823 2.5126 22 6 3.6968 -5.8212 1.4477 23 6 3.8950 -5.6841 3.8345 24 1 -0.3633 0.0027 1.0277 25 1 -0.3634 0.8885 -0.5161 26 1 -0.3634 -0.8914 -0.5115 27 1 1.9701 2.1170 0.0004 28 1 2.5940 -3.1299 -0.5107 29 1 0.8888 -2.6193 -0.5046 30 1 -0.7185 -2.6507 4.1505 31 1 1.4721 -5.9403 2.9081 32 1 1.6266 -4.3075 3.5996 33 1 3.6576 -3.2709 1.5358 34 1 3.5008 -3.0433 3.2942 35 1 4.9958 -3.7307 2.6155 36 1 4.7813 -5.8876 1.3617 37 1 3.2779 -6.8232 1.5401 38 1 3.2904 -5.3379 0.5593 39 1 3.6357 -5.0992 4.7170 40 1 3.4762 -6.6862 3.9268 41 1 4.9796 -5.7505 3.7480 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222492321.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:15 Heat of formation + Delta-G solvation = 145.782300 kcal Electronic energy + Delta-G solvation = -22523.558150 eV Core-core repulsion = 19366.387166 eV Total energy + Delta-G solvation = -3157.170984 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.172 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.87337 -43.20370 -38.53616 -35.81550 -34.69085 -32.43819 -31.16433 -30.32741 -30.10138 -28.51494 -27.74350 -27.20875 -24.89494 -23.16280 -22.63403 -21.70911 -19.02033 -18.61071 -18.36595 -18.02110 -17.83855 -17.21827 -16.66572 -16.27289 -15.93773 -15.77266 -15.23189 -14.83081 -14.71390 -14.22086 -14.17721 -14.05163 -13.95358 -13.87563 -13.66500 -13.41894 -13.27890 -13.10641 -12.53577 -12.31855 -12.25763 -12.19419 -11.47905 -11.20695 -11.15474 -10.96733 -10.23797 -10.06896 -9.95553 -7.78265 -6.00388 0.40553 0.93175 1.69032 2.01202 2.05515 2.16053 2.21001 2.38669 2.42216 2.45304 2.92976 3.01376 3.20864 3.28264 3.46623 3.53860 3.65200 3.71204 3.75972 3.77027 3.81891 3.84258 3.84554 3.96606 4.07458 4.20709 4.24496 4.33552 4.42038 4.48832 4.64206 4.68835 4.75849 5.14481 5.19059 5.31956 6.00410 6.14028 6.20809 6.53907 7.16258 7.83509 7.91751 9.23815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.460 5.460 3 C 0.151 3.849 4 N -0.299 5.299 5 N -0.292 5.292 6 C 0.182 3.818 7 C 0.152 3.848 8 O -0.368 6.368 9 C 0.200 3.800 10 H 0.036 0.964 11 C -0.569 4.569 12 H 0.074 0.926 13 C 0.093 3.907 14 N -0.859 5.859 15 Si 0.897 3.103 16 H -0.269 1.269 17 H -0.280 1.280 18 H -0.270 1.270 19 C -0.001 4.001 20 N -0.272 5.272 21 C -0.035 4.035 22 C -0.045 4.045 23 C -0.040 4.040 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.218 0.782 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.276 0.724 31 H 0.117 0.883 32 H 0.155 0.845 33 H 0.133 0.867 34 H 0.117 0.883 35 H 0.097 0.903 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.538 -6.736 0.179 10.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.150 5.150 3 C -0.137 4.137 4 N -0.139 5.139 5 N -0.135 5.135 6 C -0.085 4.085 7 C 0.073 3.927 8 O -0.287 6.287 9 C 0.144 3.856 10 H 0.053 0.947 11 C -0.606 4.606 12 H 0.092 0.908 13 C -0.117 4.117 14 N -0.493 5.493 15 Si 0.723 3.277 16 H -0.194 1.194 17 H -0.205 1.205 18 H -0.194 1.194 19 C -0.120 4.120 20 N 0.069 4.931 21 C -0.176 4.176 22 C -0.187 4.187 23 C -0.182 4.182 24 H 0.108 0.892 25 H 0.108 0.892 26 H 0.113 0.887 27 H 0.234 0.766 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.136 0.864 32 H 0.173 0.827 33 H 0.152 0.848 34 H 0.135 0.865 35 H 0.115 0.885 36 H 0.128 0.872 37 H 0.132 0.868 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.130 0.870 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 10.015 -6.511 0.529 11.957 hybrid contribution -2.723 0.114 0.028 2.725 sum 7.292 -6.397 0.557 9.716 Atomic orbital electron populations 1.22184 0.74638 1.05040 1.05147 1.46131 1.09638 1.06628 1.52641 1.26453 0.87150 0.95078 1.05017 1.74233 1.18139 1.03123 1.18422 1.74154 1.17058 1.03507 1.18755 1.24527 0.87207 0.91959 1.04828 1.20243 1.00238 0.84694 0.87528 1.88153 1.88137 1.30407 1.22043 1.19982 0.95631 0.80290 0.89689 0.94661 1.21231 0.89325 1.36378 1.13675 0.90822 1.25004 0.99896 0.92519 0.94303 1.69662 1.37021 1.29457 1.13125 0.86509 0.83118 0.79350 0.78713 1.19410 1.20494 1.19442 1.24871 0.71499 1.06720 1.08885 1.46387 1.18147 1.14947 1.13592 1.24259 1.00863 0.81236 1.11208 1.24045 1.05692 0.99441 0.89544 1.23986 1.03191 1.02326 0.88702 0.89159 0.89153 0.88687 0.76579 0.91542 0.90995 0.91334 0.86447 0.82716 0.84850 0.86457 0.88467 0.87205 0.86787 0.86389 0.86646 0.86969 0.87270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.03 11.04 59.85 0.66 0.63 16 2 N -0.46 -1.00 3.15 -122.69 -0.39 -1.39 16 3 C 0.15 0.37 12.74 -89.94 -1.15 -0.78 16 4 N -0.30 -1.70 12.21 29.69 0.36 -1.34 16 5 N -0.29 -1.49 12.21 32.80 0.40 -1.09 16 6 C 0.18 0.56 7.66 -154.98 -1.19 -0.62 16 7 C 0.15 0.12 5.38 36.00 0.19 0.31 16 8 O -0.37 -0.49 6.49 -35.23 -0.23 -0.72 16 9 C 0.20 0.02 1.86 -27.88 -0.05 -0.03 16 10 H 0.04 -0.08 5.48 -51.93 -0.28 -0.37 16 11 C -0.57 -3.11 8.89 -34.43 -0.31 -3.42 16 12 H 0.07 0.48 7.81 -52.49 -0.41 0.07 16 13 C 0.09 0.69 5.24 -17.82 -0.09 0.59 16 14 N -0.86 -6.65 10.96 55.43 0.61 -6.04 16 15 Si 0.90 6.95 29.54 -169.99 -5.02 1.93 16 16 H -0.27 -2.26 7.11 56.52 0.40 -1.86 16 17 H -0.28 -2.52 7.11 56.52 0.40 -2.12 16 18 H -0.27 -2.26 7.11 56.52 0.40 -1.86 16 19 C 0.00 0.00 3.49 -3.82 -0.01 -0.01 16 20 N -0.27 2.45 0.05 -395.61 -0.02 2.43 16 21 C -0.03 0.24 7.10 60.06 0.43 0.67 16 22 C -0.05 0.49 7.56 60.07 0.45 0.94 16 23 C -0.04 0.46 7.99 60.06 0.48 0.94 16 24 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 25 H 0.09 -0.27 8.14 -51.93 -0.42 -0.69 16 26 H 0.09 -0.05 7.19 -51.93 -0.37 -0.43 16 27 H 0.22 -0.36 8.06 -52.48 -0.42 -0.78 16 28 H 0.07 -0.12 8.04 -51.93 -0.42 -0.53 16 29 H 0.07 0.09 7.21 -51.93 -0.37 -0.29 16 30 H 0.28 2.41 8.31 -40.82 -0.34 2.07 16 31 H 0.12 -0.53 8.10 -51.93 -0.42 -0.95 16 32 H 0.16 -0.07 6.14 -51.93 -0.32 -0.39 16 33 H 0.13 -0.60 5.08 -51.93 -0.26 -0.86 16 34 H 0.12 -0.55 7.93 -51.93 -0.41 -0.96 16 35 H 0.10 -0.92 7.98 -51.93 -0.41 -1.33 16 36 H 0.11 -1.39 8.14 -51.93 -0.42 -1.82 16 37 H 0.11 -1.34 8.14 -51.93 -0.42 -1.77 16 38 H 0.12 -1.11 5.85 -51.93 -0.30 -1.41 16 39 H 0.11 -1.24 8.14 -51.93 -0.42 -1.66 16 40 H 0.11 -1.39 8.13 -51.92 -0.42 -1.81 16 41 H 0.11 -1.44 8.06 -51.93 -0.42 -1.86 16 LS Contribution 324.99 15.07 4.90 4.90 Total: 0.00 -17.58 324.99 -6.48 -24.05 By element: Atomic # 1 Polarization: -15.46 SS G_CDS: -6.51 Total: -21.96 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -0.58 Total: -0.77 kcal Atomic # 7 Polarization: -8.39 SS G_CDS: 0.97 Total: -7.42 kcal Atomic # 8 Polarization: -0.49 SS G_CDS: -0.23 Total: -0.72 kcal Atomic # 14 Polarization: 6.95 SS G_CDS: -5.02 Total: 1.93 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -17.58 -6.48 -24.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222492321.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.834 kcal (2) G-P(sol) polarization free energy of solvation -17.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds