Wall clock time and date at job start Mon Mar 30 2020 01:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35495 * 126.98057 * 2 1 4 4 N 1.30523 * 107.30912 * 180.22964 * 3 2 1 5 5 N 1.28604 * 109.66974 * 359.77278 * 4 3 2 6 6 C 1.30526 * 109.67322 * 0.02562 * 5 4 3 7 7 C 1.50697 * 126.34297 * 179.97438 * 6 5 4 8 8 O 1.42895 * 109.47133 * 90.02434 * 7 6 5 9 9 C 1.42898 * 113.99886 * 179.97438 * 8 7 6 10 10 H 1.09003 * 109.47569 * 29.99580 * 9 8 7 11 11 C 1.50705 * 109.47221 * 269.99876 * 9 8 7 12 12 H 1.07997 * 120.00091 * 119.99761 * 11 9 8 13 13 C 1.37888 * 119.99684 * 300.00256 * 11 9 8 14 14 N 1.31508 * 120.00126 * 359.97438 * 13 11 9 15 15 Si 1.86795 * 119.99495 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47279 * 60.00129 * 15 13 11 17 17 H 1.48500 * 109.46833 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47543 * 299.99793 * 15 13 11 19 19 C 1.53000 * 109.47389 * 150.00148 * 9 8 7 20 20 N 1.46902 * 109.46844 * 292.79173 * 19 9 8 21 21 C 1.46898 * 109.47425 * 63.49950 * 20 19 9 22 22 C 1.46909 * 109.46776 * 303.49846 * 20 19 9 23 23 C 1.46899 * 109.47288 * 183.50328 * 20 19 9 24 24 H 1.09005 * 109.46842 * 270.15062 * 1 2 3 25 25 H 1.08992 * 109.47366 * 30.15124 * 1 2 3 26 26 H 1.09002 * 109.47189 * 150.15137 * 1 2 3 27 27 H 1.08006 * 126.34497 * 0.02562 * 3 2 1 28 28 H 1.08998 * 109.47018 * 330.02132 * 7 6 5 29 29 H 1.09006 * 109.46989 * 210.02137 * 7 6 5 30 30 H 0.97001 * 120.00396 * 179.97438 * 14 13 11 31 31 H 1.08992 * 109.47795 * 172.79042 * 19 9 8 32 32 H 1.09003 * 109.47411 * 52.78129 * 19 9 8 33 33 H 1.09001 * 109.47085 * 289.39082 * 21 20 19 34 34 H 1.09000 * 109.47018 * 49.39165 * 21 20 19 35 35 H 1.09000 * 109.47110 * 169.39167 * 21 20 19 36 36 H 1.08998 * 109.46825 * 180.02562 * 22 20 19 37 37 H 1.08998 * 109.47154 * 300.00188 * 22 20 19 38 38 H 1.08999 * 109.46749 * 60.00422 * 22 20 19 39 39 H 1.09004 * 109.47092 * 299.99855 * 23 20 19 40 40 H 1.09007 * 109.47266 * 59.99554 * 23 20 19 41 41 H 1.08997 * 109.47479 * 179.97438 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5091 0.6430 -0.0050 5 7 3.5091 -0.6430 -0.0033 6 6 2.2800 -1.0824 0.0023 7 6 1.8477 -2.5260 0.0055 8 8 1.7162 -2.9810 1.3537 9 6 1.3074 -4.3453 1.4694 10 1 1.6719 -4.9081 0.6100 11 6 -0.1972 -4.4168 1.5152 12 1 -0.7348 -4.9701 0.7594 13 6 -0.8876 -3.7756 2.5219 14 7 -0.2329 -3.1021 3.4425 15 14 -2.7526 -3.8636 2.5782 16 1 -3.1779 -5.2814 2.6982 17 1 -3.2491 -3.0976 3.7495 18 1 -3.3134 -3.2823 1.3321 19 6 1.8856 -4.9438 2.7533 20 7 3.3473 -5.0328 2.6371 21 6 3.9118 -3.6823 2.5126 22 6 3.6968 -5.8212 1.4477 23 6 3.8950 -5.6841 3.8345 24 1 -0.3633 0.0027 1.0277 25 1 -0.3634 0.8885 -0.5161 26 1 -0.3634 -0.8914 -0.5115 27 1 1.9701 2.1170 0.0004 28 1 2.5940 -3.1299 -0.5107 29 1 0.8888 -2.6193 -0.5046 30 1 -0.7185 -2.6507 4.1505 31 1 1.4721 -5.9403 2.9081 32 1 1.6266 -4.3075 3.5996 33 1 3.6576 -3.2709 1.5358 34 1 3.5008 -3.0433 3.2942 35 1 4.9958 -3.7307 2.6155 36 1 4.7813 -5.8876 1.3617 37 1 3.2779 -6.8232 1.5401 38 1 3.2904 -5.3379 0.5593 39 1 3.6357 -5.0992 4.7170 40 1 3.4762 -6.6862 3.9268 41 1 4.9796 -5.7505 3.7480 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222492321.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:14 Heat of formation + Delta-G solvation = 142.106809 kcal Electronic energy + Delta-G solvation = -22523.717531 eV Core-core repulsion = 19366.387166 eV Total energy + Delta-G solvation = -3157.330365 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.172 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.06179 -42.61249 -38.54946 -35.96793 -35.04035 -32.61208 -31.12917 -29.50828 -29.41513 -28.57265 -27.76675 -27.33965 -24.58353 -23.33748 -22.45644 -21.86253 -19.01681 -18.32331 -18.08609 -17.75533 -17.49591 -17.22238 -16.72733 -16.36502 -16.33076 -15.78016 -15.29746 -14.44152 -14.32595 -14.14795 -13.87747 -13.73576 -13.30545 -13.26020 -13.17741 -13.16450 -13.06137 -12.91243 -12.88837 -12.70398 -12.63196 -12.49155 -11.96426 -11.40049 -11.26780 -11.12244 -10.79634 -10.30204 -10.08905 -8.31442 -6.48494 0.77926 1.06792 1.35769 1.45813 1.53009 1.60925 1.80966 2.31425 2.83636 2.93457 3.12206 3.16881 3.26787 3.64374 3.79271 3.86294 4.02866 4.03609 4.19196 4.25634 4.28903 4.35729 4.39274 4.46285 4.48071 4.53308 4.60913 4.66523 4.67493 4.79193 4.80438 4.84043 5.01121 5.06398 5.16344 5.32364 5.62162 5.90235 5.91467 6.35415 6.78645 7.33976 7.69484 8.66614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.466 5.466 3 C 0.157 3.843 4 N -0.344 5.344 5 N -0.314 5.314 6 C 0.178 3.822 7 C 0.153 3.847 8 O -0.375 6.375 9 C 0.194 3.806 10 H 0.066 0.934 11 C -0.566 4.566 12 H 0.060 0.940 13 C 0.076 3.924 14 N -0.867 5.867 15 Si 0.911 3.089 16 H -0.278 1.278 17 H -0.301 1.301 18 H -0.280 1.280 19 C 0.016 3.984 20 N -0.258 5.258 21 C -0.030 4.030 22 C -0.052 4.052 23 C -0.042 4.042 24 H 0.077 0.923 25 H 0.120 0.880 26 H 0.095 0.905 27 H 0.253 0.747 28 H 0.094 0.906 29 H 0.066 0.934 30 H 0.263 0.737 31 H 0.131 0.869 32 H 0.123 0.877 33 H 0.110 0.890 34 H 0.089 0.911 35 H 0.129 0.871 36 H 0.139 0.861 37 H 0.131 0.869 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.127 0.873 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.300 -7.971 -0.389 13.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.155 5.155 3 C -0.131 4.131 4 N -0.183 5.183 5 N -0.157 5.157 6 C -0.091 4.091 7 C 0.074 3.926 8 O -0.294 6.294 9 C 0.138 3.862 10 H 0.084 0.916 11 C -0.604 4.604 12 H 0.078 0.922 13 C -0.131 4.131 14 N -0.503 5.503 15 Si 0.741 3.259 16 H -0.204 1.204 17 H -0.228 1.228 18 H -0.206 1.206 19 C -0.105 4.105 20 N 0.084 4.916 21 C -0.172 4.172 22 C -0.193 4.193 23 C -0.183 4.183 24 H 0.095 0.905 25 H 0.138 0.862 26 H 0.113 0.887 27 H 0.268 0.732 28 H 0.112 0.888 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.149 0.851 32 H 0.141 0.859 33 H 0.129 0.871 34 H 0.107 0.893 35 H 0.147 0.853 36 H 0.157 0.843 37 H 0.149 0.851 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.146 0.854 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 11.779 -7.764 -0.049 14.107 hybrid contribution -3.284 0.476 0.142 3.322 sum 8.494 -7.288 0.093 11.193 Atomic orbital electron populations 1.22310 0.73314 1.06588 1.04734 1.46356 1.10480 1.06437 1.52262 1.27125 0.86439 0.96475 1.03107 1.74148 1.20036 1.03645 1.20487 1.74057 1.18194 1.03586 1.19825 1.24929 0.87032 0.93022 1.04118 1.20365 1.00649 0.84059 0.87547 1.88167 1.87994 1.30965 1.22313 1.20064 0.92907 0.80289 0.92889 0.91635 1.21540 0.92681 1.34337 1.11816 0.92225 1.25093 0.99010 0.93710 0.95260 1.69761 1.35960 1.31041 1.13494 0.86372 0.84473 0.78052 0.77043 1.20373 1.22753 1.20575 1.24145 0.75028 1.06265 1.05068 1.46013 1.15014 1.14842 1.15746 1.24092 1.02573 0.81786 1.08699 1.24274 1.07743 0.99509 0.87746 1.24179 1.04855 1.02398 0.86884 0.90465 0.86153 0.88682 0.73163 0.88832 0.91635 0.92727 0.85121 0.85878 0.87124 0.89264 0.85304 0.84294 0.85064 0.87734 0.87741 0.85419 0.84421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.04 11.04 127.77 1.41 1.38 16 2 N -0.47 -2.21 3.15 -542.07 -1.71 -3.92 16 3 C 0.16 0.79 12.74 180.11 2.30 3.08 16 4 N -0.34 -4.18 12.21 -59.98 -0.73 -4.91 16 5 N -0.31 -3.48 12.21 -50.15 -0.61 -4.09 16 6 C 0.18 1.22 7.66 137.98 1.06 2.27 16 7 C 0.15 0.27 5.38 71.24 0.38 0.65 16 8 O -0.38 -1.23 6.49 -148.98 -0.97 -2.20 16 9 C 0.19 0.02 1.86 29.85 0.06 0.08 16 10 H 0.07 -0.40 5.48 -2.39 -0.01 -0.41 16 11 C -0.57 -6.64 8.89 25.60 0.23 -6.42 16 12 H 0.06 0.83 7.81 -2.91 -0.02 0.81 16 13 C 0.08 1.26 5.24 84.66 0.44 1.71 16 14 N -0.87 -15.25 10.96 21.45 0.24 -15.02 16 15 Si 0.91 16.18 29.54 68.60 2.03 18.21 16 16 H -0.28 -5.20 7.11 99.48 0.71 -4.50 16 17 H -0.30 -6.31 7.11 99.48 0.71 -5.60 16 18 H -0.28 -5.30 7.11 99.48 0.71 -4.59 16 19 C 0.02 -0.12 3.49 86.30 0.30 0.18 16 20 N -0.26 5.01 0.05 ******* -0.07 4.95 16 21 C -0.03 0.43 7.10 127.69 0.91 1.34 16 22 C -0.05 1.25 7.56 127.69 0.97 2.22 16 23 C -0.04 1.06 7.99 127.69 1.02 2.08 16 24 H 0.08 0.19 8.14 -2.38 -0.02 0.17 16 25 H 0.12 -0.82 8.14 -2.39 -0.02 -0.84 16 26 H 0.09 -0.05 7.19 -2.39 -0.02 -0.06 16 27 H 0.25 -1.07 8.06 -2.91 -0.02 -1.10 16 28 H 0.09 -0.39 8.04 -2.39 -0.02 -0.41 16 29 H 0.07 0.19 7.21 -2.38 -0.02 0.17 16 30 H 0.26 5.30 8.31 -92.71 -0.77 4.53 16 31 H 0.13 -1.33 8.10 -2.39 -0.02 -1.35 16 32 H 0.12 0.03 6.14 -2.39 -0.01 0.01 16 33 H 0.11 -0.99 5.08 -2.39 -0.01 -1.00 16 34 H 0.09 -0.72 7.93 -2.39 -0.02 -0.74 16 35 H 0.13 -2.68 7.98 -2.39 -0.02 -2.69 16 36 H 0.14 -4.06 8.14 -2.39 -0.02 -4.08 16 37 H 0.13 -3.54 8.14 -2.39 -0.02 -3.56 16 38 H 0.10 -2.18 5.85 -2.39 -0.01 -2.19 16 39 H 0.10 -2.29 8.14 -2.38 -0.02 -2.31 16 40 H 0.13 -3.50 8.13 -2.38 -0.02 -3.52 16 41 H 0.14 -4.12 8.06 -2.39 -0.02 -4.14 16 Total: 0.00 -44.05 324.99 8.25 -35.80 By element: Atomic # 1 Polarization: -38.40 SS G_CDS: 1.00 Total: -37.39 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 9.07 Total: 8.57 kcal Atomic # 7 Polarization: -20.10 SS G_CDS: -2.88 Total: -22.99 kcal Atomic # 8 Polarization: -1.23 SS G_CDS: -0.97 Total: -2.20 kcal Atomic # 14 Polarization: 16.18 SS G_CDS: 2.03 Total: 18.21 kcal Total: -44.05 8.25 -35.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222492321.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.910 kcal (2) G-P(sol) polarization free energy of solvation -44.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds