Wall clock time and date at job start Mon Mar 30 2020 01:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34423 * 126.82674 * 2 1 4 4 N 1.30839 * 108.08150 * 179.97438 * 3 2 1 5 5 C 1.33241 * 109.82643 * 359.97438 * 4 3 2 6 6 C 1.50701 * 125.52836 * 179.97438 * 5 4 3 7 7 O 1.42899 * 109.47094 * 90.02624 * 6 5 4 8 8 C 1.42894 * 114.00142 * 174.82084 * 7 6 5 9 9 H 1.08994 * 109.47251 * 334.07786 * 8 7 6 10 10 C 1.50703 * 109.47333 * 214.07701 * 8 7 6 11 11 H 1.08005 * 119.99496 * 354.11420 * 10 8 7 12 12 C 1.37870 * 120.00056 * 174.11481 * 10 8 7 13 13 N 1.31515 * 120.00145 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 120.00036 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.46794 * 90.00064 * 14 12 10 16 16 H 1.48493 * 109.47184 * 209.99921 * 14 12 10 17 17 H 1.48500 * 109.47055 * 330.00308 * 14 12 10 18 18 C 1.52998 * 109.47105 * 94.07474 * 8 7 6 19 19 N 1.46906 * 109.46929 * 58.80769 * 18 8 7 20 20 C 1.46901 * 109.47171 * 64.00064 * 19 18 8 21 21 C 1.46903 * 109.46754 * 183.99839 * 19 18 8 22 22 C 1.46893 * 109.47213 * 303.99521 * 19 18 8 23 23 N 1.30716 * 108.94634 * 0.26386 * 5 4 3 24 24 H 1.09011 * 109.46904 * 90.00312 * 1 2 3 25 25 H 1.09001 * 109.47795 * 209.99911 * 1 2 3 26 26 H 1.08994 * 109.47069 * 330.00530 * 1 2 3 27 27 H 1.07998 * 125.96131 * 359.97438 * 3 2 1 28 28 H 1.09000 * 109.47248 * 210.02570 * 6 5 4 29 29 H 1.08996 * 109.46708 * 330.02900 * 6 5 4 30 30 H 0.96998 * 120.00019 * 179.97438 * 13 12 10 31 31 H 1.09003 * 109.47485 * 178.80687 * 18 8 7 32 32 H 1.08999 * 109.47320 * 298.80958 * 18 8 7 33 33 H 1.09001 * 109.47092 * 40.60787 * 20 19 18 34 34 H 1.08992 * 109.47091 * 160.61286 * 20 19 18 35 35 H 1.09002 * 109.46690 * 280.61483 * 20 19 18 36 36 H 1.08991 * 109.47664 * 60.00114 * 21 19 18 37 37 H 1.09004 * 109.46650 * 180.02562 * 21 19 18 38 38 H 1.09000 * 109.47062 * 299.99476 * 21 19 18 39 39 H 1.09000 * 109.46841 * 81.26492 * 22 19 18 40 40 H 1.08995 * 109.47374 * 201.26312 * 22 19 18 41 41 H 1.08999 * 109.47545 * 321.26593 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2707 1.0760 0.0000 4 7 3.5097 0.6555 0.0006 5 6 3.5348 -0.6766 0.0015 6 6 4.7776 -1.5291 0.0018 7 8 5.1703 -1.7981 1.3492 8 6 6.2742 -2.6981 1.4641 9 1 6.3102 -3.3430 0.5862 10 6 6.1073 -3.5425 2.7012 11 1 5.2966 -3.3423 3.3862 12 6 6.9893 -4.5704 2.9584 13 7 7.9767 -4.8138 2.1245 14 14 6.7828 -5.6166 4.4921 15 1 5.9073 -6.7764 4.1859 16 1 8.1115 -6.1043 4.9412 17 1 6.1652 -4.8007 5.5683 18 6 7.5753 -1.8993 1.5636 19 7 7.5153 -1.0092 2.7308 20 6 7.4346 -1.8142 3.9569 21 6 8.7231 -0.1739 2.7721 22 6 6.3286 -0.1494 2.6304 23 7 2.3067 -1.1243 -0.0042 24 1 -0.3633 -0.0001 -1.0278 25 1 -0.3635 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5137 27 1 1.9511 2.1076 -0.0004 28 1 4.5738 -2.4687 -0.5117 29 1 5.5806 -1.0008 -0.5121 30 1 8.5975 -5.5368 2.3057 31 1 8.4154 -2.5852 1.6726 32 1 7.7067 -1.3047 0.6596 33 1 8.1009 -2.6727 3.8725 34 1 7.7320 -1.2060 4.8111 35 1 6.4108 -2.1613 4.0968 36 1 8.7831 0.4234 1.8624 37 1 8.6787 0.4863 3.6383 38 1 9.6037 -0.8119 2.8466 39 1 5.4516 -0.6993 2.9719 40 1 6.4672 0.7354 3.2516 41 1 6.1861 0.1537 1.5931 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222946707.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:13 Heat of formation + Delta-G solvation = 159.233969 kcal Electronic energy + Delta-G solvation = -22138.459863 eV Core-core repulsion = 18981.872188 eV Total energy + Delta-G solvation = -3156.587676 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.172 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.12105 -42.94929 -38.58338 -35.36535 -34.79039 -32.48777 -31.31824 -30.05111 -29.76609 -29.40038 -27.69164 -26.67960 -24.41667 -23.10928 -22.79514 -21.66019 -19.04844 -18.38114 -18.02886 -17.91656 -17.73178 -16.94808 -16.61704 -16.45190 -15.89720 -15.53396 -15.33432 -14.76034 -14.50533 -14.31447 -14.18657 -13.86172 -13.76680 -13.63416 -13.48523 -13.29423 -13.04193 -12.84237 -12.75832 -12.48657 -12.32290 -12.11395 -11.61310 -11.10374 -11.01273 -10.78935 -10.56182 -10.36074 -10.08517 -7.92059 -5.99239 0.60343 0.76770 1.29464 1.76014 1.97344 2.09179 2.16543 2.68052 2.73343 2.78390 2.80607 2.96782 3.38137 3.40071 3.49274 3.53262 3.61895 3.84272 3.90140 3.91911 3.99790 4.05266 4.07879 4.16876 4.23239 4.32974 4.35505 4.41928 4.54684 4.67119 4.71137 4.89275 5.02281 5.19110 5.29859 5.39325 5.76722 6.00421 6.18412 6.47349 7.08804 7.10136 7.68677 9.13781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.382 5.382 3 C 0.253 3.747 4 N -0.539 5.539 5 C 0.224 3.776 6 C 0.153 3.847 7 O -0.383 6.383 8 C 0.198 3.802 9 H 0.070 0.930 10 C -0.550 4.550 11 H 0.082 0.918 12 C 0.070 3.930 13 N -0.877 5.877 14 Si 0.899 3.101 15 H -0.267 1.267 16 H -0.277 1.277 17 H -0.266 1.266 18 C -0.020 4.020 19 N -0.248 5.248 20 C -0.034 4.034 21 C -0.041 4.041 22 C -0.023 4.023 23 N -0.293 5.293 24 H 0.082 0.918 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.220 0.780 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.283 0.717 31 H 0.145 0.855 32 H 0.088 0.912 33 H 0.116 0.884 34 H 0.078 0.922 35 H 0.150 0.850 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.132 0.868 40 H 0.088 0.912 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.299 13.764 0.483 13.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.173 5.173 3 C -0.044 4.044 4 N -0.267 5.267 5 C -0.059 4.059 6 C 0.074 3.926 7 O -0.302 6.302 8 C 0.141 3.859 9 H 0.087 0.913 10 C -0.586 4.586 11 H 0.100 0.900 12 C -0.137 4.137 13 N -0.511 5.511 14 Si 0.724 3.276 15 H -0.192 1.192 16 H -0.202 1.202 17 H -0.190 1.190 18 C -0.141 4.141 19 N 0.094 4.906 20 C -0.175 4.175 21 C -0.183 4.183 22 C -0.164 4.164 23 N -0.123 5.123 24 H 0.101 0.899 25 H 0.113 0.887 26 H 0.114 0.886 27 H 0.236 0.764 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.162 0.838 32 H 0.107 0.893 33 H 0.135 0.865 34 H 0.096 0.904 35 H 0.168 0.832 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.130 0.870 39 H 0.151 0.849 40 H 0.107 0.893 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.207 13.141 0.599 13.156 hybrid contribution -0.236 -0.501 0.302 0.631 sum -0.443 12.640 0.901 12.679 Atomic orbital electron populations 1.22024 0.73269 1.05305 1.04173 1.50448 1.08399 1.04379 1.54024 1.26038 0.85764 0.95589 0.96965 1.70342 1.20717 1.10865 1.24794 1.23852 0.93290 0.89540 0.99197 1.20411 0.89166 0.96428 0.86580 1.88029 1.52591 1.66167 1.23401 1.20153 0.78676 0.85922 1.01135 0.91292 1.20987 1.14897 1.15744 1.06979 0.90024 1.24979 0.94577 0.96008 0.98105 1.69728 1.14996 1.30751 1.35661 0.86400 0.78841 0.81343 0.80985 1.19230 1.20190 1.19007 1.24723 1.09496 0.94765 0.85158 1.45713 1.13279 1.14765 1.16862 1.24724 1.12509 0.97288 0.82930 1.24004 0.88778 0.98191 1.07372 1.24192 0.88946 0.95851 1.07442 1.78148 1.01631 1.07832 1.24712 0.89936 0.88704 0.88636 0.76356 0.90522 0.91167 0.90693 0.83769 0.89322 0.86548 0.90350 0.83209 0.87368 0.87370 0.87031 0.84945 0.89307 0.87100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 -0.35 11.53 59.84 0.69 0.34 16 2 N -0.38 -0.14 4.04 -69.44 -0.28 -0.42 16 3 C 0.25 -0.23 12.66 -90.65 -1.15 -1.38 16 4 N -0.54 -0.79 11.19 -11.98 -0.13 -0.93 16 5 C 0.22 0.60 7.77 -156.85 -1.22 -0.62 16 6 C 0.15 0.16 6.09 36.01 0.22 0.38 16 7 O -0.38 -0.42 5.77 -35.23 -0.20 -0.62 16 8 C 0.20 0.37 2.24 -27.88 -0.06 0.31 16 9 H 0.07 0.33 7.66 -51.93 -0.40 -0.07 16 10 C -0.55 -2.63 5.30 -34.44 -0.18 -2.82 16 11 H 0.08 0.47 7.04 -52.48 -0.37 0.10 16 12 C 0.07 0.46 3.63 -17.82 -0.06 0.40 16 13 N -0.88 -6.75 11.76 55.43 0.65 -6.09 16 14 Si 0.90 6.11 29.54 -169.99 -5.02 1.09 16 15 H -0.27 -2.44 7.11 56.52 0.40 -2.04 16 16 H -0.28 -2.11 7.11 56.52 0.40 -1.71 16 17 H -0.27 -1.63 7.11 56.52 0.40 -1.23 16 18 C -0.02 0.05 4.06 -3.82 -0.02 0.04 16 19 N -0.25 1.53 0.05 -395.63 -0.02 1.51 16 20 C -0.03 0.14 6.90 60.07 0.41 0.56 16 21 C -0.04 0.39 7.85 60.07 0.47 0.86 16 22 C -0.02 0.14 6.99 60.06 0.42 0.56 16 23 N -0.29 -1.16 12.70 32.42 0.41 -0.75 16 24 H 0.08 -0.38 8.14 -51.92 -0.42 -0.80 16 25 H 0.09 -0.30 8.14 -51.93 -0.42 -0.72 16 26 H 0.10 -0.63 8.14 -51.93 -0.42 -1.05 16 27 H 0.22 -1.26 8.06 -52.49 -0.42 -1.68 16 28 H 0.08 0.15 7.97 -51.93 -0.41 -0.26 16 29 H 0.07 -0.08 8.14 -51.93 -0.42 -0.51 16 30 H 0.28 2.36 8.31 -40.82 -0.34 2.02 16 31 H 0.14 -0.08 6.29 -51.93 -0.33 -0.40 16 32 H 0.09 -0.42 8.05 -51.93 -0.42 -0.84 16 33 H 0.12 -0.21 6.04 -51.93 -0.31 -0.52 16 34 H 0.08 -0.56 7.80 -51.93 -0.41 -0.97 16 35 H 0.15 -0.28 4.50 -51.93 -0.23 -0.51 16 36 H 0.11 -1.13 8.12 -51.93 -0.42 -1.55 16 37 H 0.11 -1.20 7.87 -51.93 -0.41 -1.60 16 38 H 0.11 -1.04 8.14 -51.93 -0.42 -1.46 16 39 H 0.13 -0.42 5.76 -51.93 -0.30 -0.72 16 40 H 0.09 -0.75 7.77 -51.93 -0.40 -1.15 16 41 H 0.11 -0.57 6.82 -51.93 -0.35 -0.93 16 LS Contribution 320.15 15.07 4.82 4.82 Total: 0.00 -14.69 320.15 -6.68 -21.38 By element: Atomic # 1 Polarization: -12.18 SS G_CDS: -6.44 Total: -18.61 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -0.48 Total: -1.38 kcal Atomic # 7 Polarization: -7.31 SS G_CDS: 0.63 Total: -6.68 kcal Atomic # 8 Polarization: -0.42 SS G_CDS: -0.20 Total: -0.62 kcal Atomic # 14 Polarization: 6.11 SS G_CDS: -5.02 Total: 1.09 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -14.69 -6.68 -21.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222946707.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.613 kcal (2) G-P(sol) polarization free energy of solvation -14.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds