Wall clock time and date at job start Mon Mar 30 2020 01:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21283 * 119.99578 * 2 1 4 4 N 1.34775 * 120.00352 * 179.97438 * 2 1 3 5 5 C 1.47019 * 125.64595 * 0.05354 * 4 2 1 6 6 C 1.54330 * 107.26866 * 181.01194 * 5 4 2 7 7 C 1.55157 * 102.94049 * 22.19588 * 6 5 4 8 8 H 1.09002 * 111.00633 * 82.57450 * 7 6 5 9 9 O 1.42896 * 111.00084 * 206.38302 * 7 6 5 10 10 C 1.42904 * 114.00148 * 210.00000 * 9 7 6 11 11 C 1.52993 * 109.47242 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47127 * 179.97438 * 11 10 9 13 13 C 1.53009 * 109.47233 * 180.02562 * 12 11 10 14 14 C 1.52991 * 109.46934 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46936 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00161 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99946 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99629 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00088 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47535 * 89.99615 * 19 17 15 21 21 H 1.48497 * 109.47174 * 209.99747 * 19 17 15 22 22 H 1.48500 * 109.46987 * 329.99299 * 19 17 15 23 23 C 1.47426 * 125.65028 * 180.02562 * 4 2 1 24 24 H 1.09004 * 109.47537 * 269.99740 * 1 2 3 25 25 H 1.08996 * 109.47585 * 30.00164 * 1 2 3 26 26 H 1.08999 * 109.46832 * 150.00378 * 1 2 3 27 27 H 1.09000 * 109.88042 * 61.59824 * 5 4 2 28 28 H 1.08996 * 109.88551 * 300.42965 * 5 4 2 29 29 H 1.08996 * 110.71860 * 263.82642 * 6 5 4 30 30 H 1.09002 * 110.71679 * 140.55640 * 6 5 4 31 31 H 1.09001 * 109.47010 * 300.00192 * 10 9 7 32 32 H 1.08997 * 109.46971 * 59.99829 * 10 9 7 33 33 H 1.09001 * 109.47297 * 300.00043 * 11 10 9 34 34 H 1.09007 * 109.47324 * 59.99962 * 11 10 9 35 35 H 1.09001 * 109.47104 * 300.00206 * 12 11 10 36 36 H 1.08999 * 109.47115 * 60.00449 * 12 11 10 37 37 H 1.08994 * 109.46712 * 300.00147 * 13 12 11 38 38 H 1.08999 * 109.46903 * 60.00075 * 13 12 11 39 39 H 1.09001 * 109.47283 * 299.99888 * 14 13 12 40 40 H 1.08999 * 109.47236 * 60.00314 * 14 13 12 41 41 H 0.97002 * 119.99622 * 180.02562 * 18 17 15 42 42 H 1.09004 * 110.36498 * 37.07621 * 23 4 2 43 43 H 1.09000 * 110.45813 * 274.80371 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.5747 -2.5065 0.0000 6 6 2.7282 -3.5315 0.0269 7 6 3.9081 -2.7114 0.6123 8 1 3.8585 -2.6774 1.7006 9 8 5.1633 -3.2368 0.1758 10 6 6.2295 -3.0449 1.1078 11 6 7.5175 -3.6437 0.5395 12 6 8.6592 -3.4377 1.5371 13 6 9.9475 -4.0361 0.9685 14 6 11.0892 -3.8295 1.9658 15 6 12.3580 -4.4194 1.4061 16 1 12.3509 -4.8938 0.4358 17 6 13.5283 -4.3525 2.1322 18 7 14.6353 -4.8677 1.6439 19 14 13.5408 -3.5314 3.8099 20 1 13.2403 -4.5404 4.8572 21 1 14.8796 -2.9403 4.0618 22 1 12.5126 -2.4605 3.8446 23 6 3.6480 -1.3122 0.0011 24 1 -0.3634 0.0000 1.0277 25 1 -0.3634 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 0.9785 -2.6432 -0.9021 28 1 0.9482 -2.6303 0.8833 29 1 2.9608 -3.8769 -0.9803 30 1 2.4826 -4.3715 0.6767 31 1 6.3708 -1.9785 1.2836 32 1 5.9835 -3.5387 2.0479 33 1 7.3759 -4.7102 0.3640 34 1 7.7637 -3.1503 -0.4008 35 1 8.8007 -2.3712 1.7122 36 1 8.4133 -3.9309 2.4775 37 1 9.8063 -5.1025 0.7931 38 1 10.1932 -3.5426 0.0282 39 1 11.2303 -2.7629 2.1408 40 1 10.8438 -4.3227 2.9063 41 1 15.4585 -4.8210 2.1549 42 1 4.1055 -0.5380 0.6172 43 1 4.0360 -1.2648 -1.0164 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224370583.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:34 Heat of formation + Delta-G solvation = -106.260401 kcal Electronic energy + Delta-G solvation = -19811.467238 eV Core-core repulsion = 16662.844283 eV Total energy + Delta-G solvation = -3148.622955 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.47828 -38.67959 -36.92581 -35.31184 -32.88441 -31.92704 -30.60459 -30.29049 -28.42097 -26.71061 -23.95279 -23.18823 -21.72105 -20.85864 -20.03789 -19.78684 -17.59722 -17.42014 -16.62614 -16.18457 -15.84876 -15.66587 -14.84513 -14.70087 -14.33516 -14.18944 -13.64145 -13.33203 -13.22911 -12.99571 -12.78411 -12.60458 -12.46856 -12.31997 -12.10784 -11.89425 -11.69739 -11.32416 -11.05493 -11.00084 -10.66263 -10.51156 -10.30635 -9.87418 -9.79203 -9.67136 -9.46861 -9.13550 -9.10563 -8.51046 -6.01531 -3.99043 2.22049 2.45202 3.32223 3.39444 3.40483 3.43691 3.93867 4.08984 4.40318 4.47671 4.49115 4.66666 4.76602 4.81364 4.92799 5.00631 5.02136 5.12329 5.31019 5.32486 5.33702 5.37314 5.41231 5.49513 5.52182 5.61425 5.63091 5.79207 5.95733 6.17882 6.28018 6.38325 6.66236 6.75831 6.96877 6.99724 7.04772 7.35738 7.48455 7.73539 7.83467 8.57862 9.04028 9.61334 11.12081 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.040848 B = 0.002342 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.310991 B =11953.055839 C =12306.991443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.525 3.475 3 O -0.544 6.544 4 N -0.620 5.620 5 C 0.102 3.898 6 C -0.131 4.131 7 C 0.076 3.924 8 H 0.079 0.921 9 O -0.370 6.370 10 C 0.060 3.940 11 C -0.117 4.117 12 C -0.119 4.119 13 C -0.102 4.102 14 C -0.016 4.016 15 C -0.520 4.520 16 H 0.071 0.929 17 C 0.063 3.937 18 N -0.905 5.905 19 Si 0.881 3.119 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.266 1.266 23 C 0.083 3.917 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.014 0.986 40 H 0.010 0.990 41 H 0.262 0.738 42 H 0.080 0.920 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.890 4.316 -1.693 32.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.315 3.685 3 O -0.421 6.421 4 N -0.356 5.356 5 C -0.021 4.021 6 C -0.169 4.169 7 C 0.017 3.983 8 H 0.097 0.903 9 O -0.288 6.288 10 C -0.017 4.017 11 C -0.154 4.154 12 C -0.156 4.156 13 C -0.139 4.139 14 C -0.053 4.053 15 C -0.558 4.558 16 H 0.089 0.911 17 C -0.137 4.137 18 N -0.544 5.544 19 Si 0.709 3.291 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.190 1.190 23 C -0.040 4.040 24 H 0.113 0.887 25 H 0.113 0.887 26 H 0.099 0.901 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.033 0.967 40 H 0.028 0.972 41 H 0.072 0.928 42 H 0.098 0.902 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -31.393 4.836 -1.834 31.816 hybrid contribution 0.147 0.422 1.140 1.224 sum -31.246 5.258 -0.694 31.693 Atomic orbital electron populations 1.21884 0.91137 1.04962 1.04836 1.20556 0.90441 0.81920 0.75612 1.90754 1.70790 1.30616 1.49986 1.48439 1.07355 1.05989 1.73863 1.22080 0.96372 0.81386 1.02236 1.22758 0.92848 0.97499 1.03747 1.23135 0.85000 0.91940 0.98215 0.90323 1.87938 1.16768 1.79274 1.44861 1.22772 0.87209 0.99817 0.91853 1.21585 0.92111 1.01658 1.00074 1.21627 0.94906 1.01169 0.97941 1.21439 0.93126 0.99814 0.99554 1.19590 0.94313 0.96548 0.94841 1.21194 0.91929 1.37155 1.05490 0.91083 1.25064 0.95553 0.95104 0.98005 1.69923 0.99986 1.46077 1.38444 0.86752 0.77281 0.80344 0.84741 1.20358 1.21441 1.19034 1.22684 0.80632 0.98066 1.02578 0.88738 0.88740 0.90119 0.90686 0.90869 0.89104 0.89182 0.93190 0.93143 0.91201 0.91193 0.92376 0.92411 0.92786 0.92750 0.96729 0.97183 0.92808 0.90151 0.90253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.83 9.90 36.00 0.36 -0.48 16 2 C 0.53 5.10 7.96 -10.99 -0.09 5.01 16 3 O -0.54 -7.90 17.36 5.55 0.10 -7.80 16 4 N -0.62 -5.20 3.33 -170.54 -0.57 -5.77 16 5 C 0.10 0.50 6.11 -3.06 -0.02 0.48 16 6 C -0.13 -0.77 6.69 -24.89 -0.17 -0.93 16 7 C 0.08 0.64 3.54 -24.60 -0.09 0.56 16 8 H 0.08 0.61 7.83 -51.93 -0.41 0.20 16 9 O -0.37 -4.11 10.16 -35.23 -0.36 -4.47 16 10 C 0.06 0.67 5.77 37.15 0.21 0.88 16 11 C -0.12 -1.54 5.58 -26.73 -0.15 -1.68 16 12 C -0.12 -1.84 5.21 -26.73 -0.14 -1.98 16 13 C -0.10 -2.01 5.15 -26.73 -0.14 -2.15 16 14 C -0.02 -0.38 4.04 -27.89 -0.11 -0.49 16 15 C -0.52 -15.14 9.66 -34.44 -0.33 -15.47 16 16 H 0.07 2.22 7.99 -52.48 -0.42 1.80 16 17 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 18 N -0.91 -28.38 13.96 55.43 0.77 -27.61 16 19 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 23 C 0.08 0.80 6.64 -2.54 -0.02 0.79 16 24 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.08 0.22 7.12 -51.93 -0.37 -0.15 16 27 H 0.07 0.26 7.86 -51.93 -0.41 -0.15 16 28 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.51 8.12 -51.93 -0.42 0.09 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 40 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 16 41 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 42 H 0.08 0.87 8.04 -51.93 -0.42 0.45 16 43 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 350.64 15.07 5.28 5.28 Total: -1.00 -34.67 350.64 -8.09 -42.76 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: -7.87 Total: -6.14 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -0.77 Total: -13.68 kcal Atomic # 7 Polarization: -33.58 SS G_CDS: 0.21 Total: -33.37 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: -0.26 Total: -12.27 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.67 -8.09 -42.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224370583.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.501 kcal (2) G-P(sol) polarization free energy of solvation -34.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds