Wall clock time and date at job start Mon Mar 30 2020 01:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21283 * 119.99578 * 2 1 4 4 N 1.34775 * 120.00352 * 179.97438 * 2 1 3 5 5 C 1.47019 * 125.64595 * 0.05354 * 4 2 1 6 6 C 1.54330 * 107.26866 * 181.01194 * 5 4 2 7 7 C 1.55157 * 102.94049 * 22.19588 * 6 5 4 8 8 H 1.09002 * 111.00633 * 82.57450 * 7 6 5 9 9 O 1.42896 * 111.00084 * 206.38302 * 7 6 5 10 10 C 1.42904 * 114.00148 * 210.00000 * 9 7 6 11 11 C 1.52993 * 109.47242 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47127 * 179.97438 * 11 10 9 13 13 C 1.53009 * 109.47233 * 180.02562 * 12 11 10 14 14 C 1.52991 * 109.46934 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46936 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00161 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99946 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99629 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00088 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47535 * 89.99615 * 19 17 15 21 21 H 1.48497 * 109.47174 * 209.99747 * 19 17 15 22 22 H 1.48500 * 109.46987 * 329.99299 * 19 17 15 23 23 C 1.47426 * 125.65028 * 180.02562 * 4 2 1 24 24 H 1.09004 * 109.47537 * 269.99740 * 1 2 3 25 25 H 1.08996 * 109.47585 * 30.00164 * 1 2 3 26 26 H 1.08999 * 109.46832 * 150.00378 * 1 2 3 27 27 H 1.09000 * 109.88042 * 61.59824 * 5 4 2 28 28 H 1.08996 * 109.88551 * 300.42965 * 5 4 2 29 29 H 1.08996 * 110.71860 * 263.82642 * 6 5 4 30 30 H 1.09002 * 110.71679 * 140.55640 * 6 5 4 31 31 H 1.09001 * 109.47010 * 300.00192 * 10 9 7 32 32 H 1.08997 * 109.46971 * 59.99829 * 10 9 7 33 33 H 1.09001 * 109.47297 * 300.00043 * 11 10 9 34 34 H 1.09007 * 109.47324 * 59.99962 * 11 10 9 35 35 H 1.09001 * 109.47104 * 300.00206 * 12 11 10 36 36 H 1.08999 * 109.47115 * 60.00449 * 12 11 10 37 37 H 1.08994 * 109.46712 * 300.00147 * 13 12 11 38 38 H 1.08999 * 109.46903 * 60.00075 * 13 12 11 39 39 H 1.09001 * 109.47283 * 299.99888 * 14 13 12 40 40 H 1.08999 * 109.47236 * 60.00314 * 14 13 12 41 41 H 0.97002 * 119.99622 * 180.02562 * 18 17 15 42 42 H 1.09004 * 110.36498 * 37.07621 * 23 4 2 43 43 H 1.09000 * 110.45813 * 274.80371 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.5747 -2.5065 0.0000 6 6 2.7282 -3.5315 0.0269 7 6 3.9081 -2.7114 0.6123 8 1 3.8585 -2.6774 1.7006 9 8 5.1633 -3.2368 0.1758 10 6 6.2295 -3.0449 1.1078 11 6 7.5175 -3.6437 0.5395 12 6 8.6592 -3.4377 1.5371 13 6 9.9475 -4.0361 0.9685 14 6 11.0892 -3.8295 1.9658 15 6 12.3580 -4.4194 1.4061 16 1 12.3509 -4.8938 0.4358 17 6 13.5283 -4.3525 2.1322 18 7 14.6353 -4.8677 1.6439 19 14 13.5408 -3.5314 3.8099 20 1 13.2403 -4.5404 4.8572 21 1 14.8796 -2.9403 4.0618 22 1 12.5126 -2.4605 3.8446 23 6 3.6480 -1.3122 0.0011 24 1 -0.3634 0.0000 1.0277 25 1 -0.3634 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 0.9785 -2.6432 -0.9021 28 1 0.9482 -2.6303 0.8833 29 1 2.9608 -3.8769 -0.9803 30 1 2.4826 -4.3715 0.6767 31 1 6.3708 -1.9785 1.2836 32 1 5.9835 -3.5387 2.0479 33 1 7.3759 -4.7102 0.3640 34 1 7.7637 -3.1503 -0.4008 35 1 8.8007 -2.3712 1.7122 36 1 8.4133 -3.9309 2.4775 37 1 9.8063 -5.1025 0.7931 38 1 10.1932 -3.5426 0.0282 39 1 11.2303 -2.7629 2.1408 40 1 10.8438 -4.3227 2.9063 41 1 15.4585 -4.8210 2.1549 42 1 4.1055 -0.5380 0.6172 43 1 4.0360 -1.2648 -1.0164 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224370583.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:34 Heat of formation + Delta-G solvation = -129.167663 kcal Electronic energy + Delta-G solvation = -19812.460571 eV Core-core repulsion = 16662.844283 eV Total energy + Delta-G solvation = -3149.616288 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.15368 -39.47577 -37.77718 -36.71585 -34.78510 -32.90998 -31.99701 -30.80256 -29.15863 -28.17413 -25.03276 -24.25789 -22.50781 -22.03871 -21.66780 -20.40374 -18.88115 -18.27053 -18.06002 -17.07696 -16.59129 -16.50883 -16.32187 -15.75854 -15.53409 -15.15472 -14.80777 -14.34594 -14.28112 -13.89685 -13.81923 -13.50578 -13.47456 -13.32964 -13.03983 -12.96605 -12.74762 -12.59747 -12.45863 -12.00508 -11.88210 -11.71605 -11.63929 -11.37469 -11.30372 -11.17228 -11.08362 -10.76498 -10.58342 -9.77288 -8.29789 -6.34027 1.35359 1.37978 1.50267 1.52796 1.83141 2.36362 2.67486 3.05343 3.36990 3.57255 3.85179 3.90827 4.03502 4.05166 4.20542 4.26519 4.34277 4.40114 4.45593 4.46877 4.57672 4.60499 4.70499 4.72973 4.76513 4.84889 4.94225 4.97226 5.00454 5.06263 5.11058 5.17551 5.19965 5.27429 5.34711 5.59168 5.66021 5.68593 6.21912 6.29357 6.43670 6.74462 7.04910 7.30572 8.87231 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.040848 B = 0.002342 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.310991 B =11953.055839 C =12306.991443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.514 3.486 3 O -0.607 6.607 4 N -0.620 5.620 5 C 0.100 3.900 6 C -0.125 4.125 7 C 0.075 3.925 8 H 0.091 0.909 9 O -0.386 6.386 10 C 0.064 3.936 11 C -0.111 4.111 12 C -0.108 4.108 13 C -0.098 4.098 14 C -0.014 4.014 15 C -0.536 4.536 16 H 0.028 0.972 17 C -0.002 4.002 18 N -0.953 5.953 19 Si 0.956 3.044 20 H -0.264 1.264 21 H -0.285 1.285 22 H -0.246 1.246 23 C 0.080 3.920 24 H 0.113 0.887 25 H 0.092 0.908 26 H 0.109 0.891 27 H 0.097 0.903 28 H 0.101 0.899 29 H 0.084 0.916 30 H 0.112 0.888 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.048 0.952 38 H 0.043 0.957 39 H 0.019 0.981 40 H 0.021 0.979 41 H 0.266 0.734 42 H 0.059 0.941 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.966 4.175 0.176 35.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.306 3.694 3 O -0.489 6.489 4 N -0.355 5.355 5 C -0.021 4.021 6 C -0.162 4.162 7 C 0.016 3.984 8 H 0.108 0.892 9 O -0.304 6.304 10 C -0.012 4.012 11 C -0.149 4.149 12 C -0.146 4.146 13 C -0.136 4.136 14 C -0.052 4.052 15 C -0.574 4.574 16 H 0.047 0.953 17 C -0.198 4.198 18 N -0.594 5.594 19 Si 0.779 3.221 20 H -0.189 1.189 21 H -0.210 1.210 22 H -0.169 1.169 23 C -0.044 4.044 24 H 0.132 0.868 25 H 0.111 0.889 26 H 0.128 0.872 27 H 0.115 0.885 28 H 0.119 0.881 29 H 0.103 0.897 30 H 0.130 0.870 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.037 0.963 40 H 0.039 0.961 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -34.511 4.652 0.021 34.823 hybrid contribution 1.135 0.391 0.437 1.278 sum -33.375 5.043 0.458 33.757 Atomic orbital electron populations 1.21909 0.87105 1.06329 1.06424 1.21515 0.92346 0.81236 0.74333 1.90719 1.72313 1.32838 1.52986 1.48593 1.06828 1.07308 1.72729 1.22363 0.96229 0.78833 1.04671 1.22797 0.91738 0.98027 1.03679 1.23289 0.84736 0.91458 0.98910 0.89157 1.87907 1.17693 1.79466 1.45383 1.22651 0.86499 0.99875 0.92211 1.21447 0.92551 1.01762 0.99140 1.21474 0.93221 1.01189 0.98712 1.21342 0.94089 0.99844 0.98298 1.19571 0.93392 0.96191 0.96020 1.21588 0.94567 1.37081 1.04165 0.95345 1.26126 0.94918 0.95838 1.02952 1.70085 1.00919 1.47811 1.40611 0.85570 0.77927 0.79821 0.78785 1.18908 1.21035 1.16911 1.22595 0.81911 0.98571 1.01331 0.86837 0.88883 0.87229 0.88529 0.88093 0.89731 0.86991 0.93049 0.91511 0.91233 0.92077 0.91793 0.91077 0.93358 0.93799 0.96311 0.96106 0.92527 0.92267 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 9.90 71.24 0.71 -0.46 16 2 C 0.51 9.58 7.96 87.66 0.70 10.28 16 3 O -0.61 -18.26 17.36 -3.04 -0.05 -18.31 16 4 N -0.62 -9.55 3.33 -811.84 -2.70 -12.25 16 5 C 0.10 0.63 6.11 86.73 0.53 1.17 16 6 C -0.12 -1.10 6.69 31.78 0.21 -0.88 16 7 C 0.07 1.14 3.54 31.98 0.11 1.25 16 8 H 0.09 1.17 7.83 -2.39 -0.02 1.15 16 9 O -0.39 -8.04 10.16 -148.98 -1.51 -9.55 16 10 C 0.06 1.31 5.77 71.98 0.42 1.73 16 11 C -0.11 -2.78 5.58 30.59 0.17 -2.61 16 12 C -0.11 -3.16 5.21 30.60 0.16 -3.00 16 13 C -0.10 -3.85 5.15 30.59 0.16 -3.69 16 14 C -0.01 -0.68 4.04 29.85 0.12 -0.56 16 15 C -0.54 -31.94 9.66 25.60 0.25 -31.69 16 16 H 0.03 1.86 7.99 -2.91 -0.02 1.84 16 17 C 0.00 -0.13 5.47 84.66 0.46 0.34 16 18 N -0.95 -61.24 13.96 21.45 0.30 -60.94 16 19 Si 0.96 45.03 27.47 68.60 1.88 46.92 16 20 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 21 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 22 H -0.25 -10.70 6.54 99.48 0.65 -10.05 16 23 C 0.08 1.54 6.64 86.85 0.58 2.12 16 24 H 0.11 0.44 8.14 -2.38 -0.02 0.42 16 25 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.11 0.16 7.12 -2.39 -0.02 0.14 16 27 H 0.10 0.26 7.86 -2.39 -0.02 0.24 16 28 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 29 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.07 1.17 8.12 -2.39 -0.02 1.15 16 33 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 35 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16 40 H 0.02 0.94 7.57 -2.39 -0.02 0.92 16 41 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 42 H 0.06 1.36 8.04 -2.38 -0.02 1.34 16 43 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -78.72 350.64 3.38 -75.34 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: 0.89 Total: 4.80 kcal Atomic # 6 Polarization: -30.58 SS G_CDS: 4.57 Total: -26.01 kcal Atomic # 7 Polarization: -70.79 SS G_CDS: -2.40 Total: -73.19 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -1.57 Total: -27.86 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.88 Total: 46.92 kcal Total: -78.72 3.38 -75.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224370583.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.824 kcal (2) G-P(sol) polarization free energy of solvation -78.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds