Wall clock time and date at job start Mon Mar 30 2020 01:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21288 * 119.99933 * 2 1 4 4 N 1.34780 * 120.00489 * 180.02562 * 2 1 3 5 5 C 1.46957 * 120.64915 * 359.81927 * 4 2 1 6 6 C 1.53197 * 108.89063 * 233.53185 * 5 4 2 7 7 C 1.53040 * 109.31110 * 305.44560 * 6 5 4 8 8 C 1.53044 * 109.53662 * 61.36306 * 7 6 5 9 9 H 1.08997 * 109.49691 * 58.58900 * 8 7 6 10 10 O 1.42907 * 109.49607 * 178.68241 * 8 7 6 11 11 C 1.42902 * 113.99922 * 209.83973 * 10 8 7 12 12 C 1.52993 * 109.46966 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.47083 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.47128 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47111 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99889 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99944 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99942 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00036 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47146 * 89.99222 * 19 17 15 21 21 H 1.48490 * 109.47255 * 209.99383 * 19 17 15 22 22 H 1.48502 * 109.46918 * 329.99752 * 19 17 15 23 23 C 1.46926 * 120.63278 * 180.02562 * 4 2 1 24 24 H 1.08992 * 109.47027 * 269.99993 * 1 2 3 25 25 H 1.08994 * 109.46977 * 30.00396 * 1 2 3 26 26 H 1.08999 * 109.46581 * 149.99876 * 1 2 3 27 27 H 1.09001 * 109.46843 * 113.75181 * 5 4 2 28 28 H 1.08997 * 109.71602 * 353.46674 * 5 4 2 29 29 H 1.08995 * 109.50005 * 185.49506 * 6 5 4 30 30 H 1.08996 * 109.49270 * 65.39471 * 6 5 4 31 31 H 1.08994 * 109.45892 * 301.34445 * 7 6 5 32 32 H 1.09001 * 109.45142 * 181.37673 * 7 6 5 33 33 H 1.09002 * 109.46591 * 299.99844 * 11 10 8 34 34 H 1.08999 * 109.47060 * 59.99583 * 11 10 8 35 35 H 1.09000 * 109.47585 * 299.99746 * 12 11 10 36 36 H 1.09001 * 109.47163 * 59.99940 * 12 11 10 37 37 H 1.08995 * 109.47212 * 299.99781 * 13 12 11 38 38 H 1.09001 * 109.46831 * 60.00152 * 13 12 11 39 39 H 1.09009 * 109.47177 * 300.00175 * 14 13 12 40 40 H 1.09001 * 109.46957 * 60.00453 * 14 13 12 41 41 H 0.97006 * 119.99673 * 180.02562 * 18 17 15 42 42 H 1.09002 * 109.58861 * 6.60537 * 23 4 2 43 43 H 1.08996 * 109.58519 * 246.32428 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 1.4608 -2.4482 0.0029 6 6 1.9718 -3.3014 1.1681 7 6 3.4930 -3.4358 1.0679 8 6 4.1366 -2.0506 1.1647 9 1 3.8547 -1.5836 2.1084 10 8 5.5585 -2.1799 1.1019 11 6 6.2665 -1.1651 1.8167 12 6 7.7719 -1.4015 1.6806 13 6 8.5301 -0.3146 2.4453 14 6 10.0355 -0.5514 2.3098 15 6 10.7823 0.5188 3.0636 16 1 10.2375 1.2908 3.5866 17 6 12.1609 0.5128 3.0845 18 7 12.8242 -0.4270 2.4472 19 14 13.0865 1.8398 4.0183 20 1 13.3107 1.3956 5.4175 21 1 14.3953 2.0859 3.3614 22 1 12.2892 3.0926 4.0185 23 6 3.6501 -1.1833 0.0000 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3632 -0.8900 -0.5139 27 1 1.6410 -2.9688 -0.9377 28 1 0.3923 -2.2690 0.1224 29 1 1.5155 -4.2902 1.1225 30 1 1.7103 -2.8226 2.1117 31 1 3.7552 -3.8920 0.1134 32 1 3.8565 -4.0628 1.8821 33 1 6.0139 -0.1877 1.4055 34 1 5.9866 -1.1998 2.8695 35 1 8.0249 -2.3789 2.0914 36 1 8.0515 -1.3665 0.6276 37 1 8.2771 0.6626 2.0342 38 1 8.2506 -0.3492 3.4984 39 1 10.2882 -1.5287 2.7212 40 1 10.3153 -0.5171 1.2568 41 1 13.7941 -0.4314 2.4623 42 1 4.0267 -0.1673 0.1190 43 1 4.0113 -1.5990 -0.9406 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224689320.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:30 Heat of formation + Delta-G solvation = -109.472103 kcal Electronic energy + Delta-G solvation = -20419.366792 eV Core-core repulsion = 17270.604567 eV Total energy + Delta-G solvation = -3148.762225 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.51692 -38.51599 -36.81201 -34.61102 -33.01341 -32.26159 -31.31912 -29.52053 -28.30905 -25.55733 -24.80036 -23.17709 -21.74037 -21.27538 -19.97637 -19.32729 -17.54723 -16.54683 -16.39079 -16.19201 -15.76511 -15.38874 -14.92717 -14.74225 -14.41718 -13.94065 -13.65751 -13.46485 -13.31170 -12.92274 -12.87452 -12.44400 -12.36101 -11.92183 -11.73977 -11.44086 -11.42021 -11.19048 -11.05020 -10.77888 -10.70351 -10.48846 -10.37444 -10.11317 -9.69828 -9.57903 -9.27944 -9.01296 -8.89022 -8.30625 -5.95729 -3.97957 2.31720 2.60423 3.34865 3.40779 3.44664 3.64863 4.19063 4.41454 4.47114 4.49733 4.60888 4.69369 4.80159 4.88139 4.96588 5.05140 5.16459 5.33043 5.38125 5.40088 5.40675 5.45120 5.48325 5.60048 5.67302 5.78326 5.86390 5.88744 6.04494 6.14351 6.23174 6.50748 6.81436 6.95099 7.05497 7.12869 7.34510 7.72885 7.86227 7.87952 8.05074 8.47560 9.09356 9.65818 11.15688 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.032387 B = 0.002780 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.343414 B =10069.147549 C =10688.418161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.510 3.490 3 O -0.544 6.544 4 N -0.611 5.611 5 C 0.102 3.898 6 C -0.132 4.132 7 C -0.119 4.119 8 C 0.078 3.922 9 H 0.062 0.938 10 O -0.378 6.378 11 C 0.061 3.939 12 C -0.115 4.115 13 C -0.108 4.108 14 C 0.021 3.979 15 C -0.520 4.520 16 H 0.055 0.945 17 C 0.055 3.945 18 N -0.896 5.896 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.088 3.912 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.047 0.953 34 H 0.046 0.954 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.260 0.740 42 H 0.094 0.906 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.169 -7.247 -4.874 29.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.299 3.701 3 O -0.421 6.421 4 N -0.347 5.347 5 C -0.021 4.021 6 C -0.171 4.171 7 C -0.156 4.156 8 C 0.019 3.981 9 H 0.080 0.920 10 O -0.296 6.296 11 C -0.015 4.015 12 C -0.153 4.153 13 C -0.146 4.146 14 C -0.016 4.016 15 C -0.559 4.559 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.035 4.035 24 H 0.112 0.888 25 H 0.112 0.888 26 H 0.101 0.899 27 H 0.091 0.909 28 H 0.109 0.891 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.034 0.966 40 H 0.035 0.965 41 H 0.070 0.930 42 H 0.113 0.887 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -27.559 -6.879 -5.018 28.845 hybrid contribution 0.509 0.799 0.653 1.151 sum -27.050 -6.080 -4.365 28.067 Atomic orbital electron populations 1.21965 0.91702 1.04889 1.04829 1.20866 0.90681 0.83028 0.75535 1.90750 1.70650 1.31008 1.49668 1.48132 1.06752 1.06148 1.73658 1.21890 0.96914 0.84011 0.99300 1.21914 0.95807 1.00549 0.98802 1.21599 0.94013 0.96220 1.03784 1.22293 0.82399 0.95986 0.97413 0.92026 1.87942 1.15886 1.51379 1.74395 1.22800 0.93707 0.90228 0.94769 1.21637 0.90737 1.00971 1.01957 1.21583 0.98652 0.96162 0.98191 1.19090 0.88246 0.97010 0.97209 1.21282 0.91329 1.11493 1.31768 0.92718 1.25034 0.97863 0.95954 0.95694 1.69972 1.07308 1.33422 1.42855 0.86597 0.79257 0.82249 0.79923 1.20691 1.21225 1.19880 1.22112 0.79079 1.02686 0.99625 0.88779 0.88838 0.89881 0.90921 0.89122 0.89811 0.91237 0.90725 0.90623 0.93444 0.93537 0.91684 0.91640 0.93275 0.93359 0.96553 0.96514 0.93037 0.88742 0.90536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.99 9.46 36.00 0.34 -0.65 16 2 C 0.51 5.42 7.81 -10.99 -0.09 5.33 16 3 O -0.54 -8.49 16.51 5.55 0.09 -8.40 16 4 N -0.61 -5.68 2.98 -172.77 -0.51 -6.20 16 5 C 0.10 0.55 6.21 -3.69 -0.02 0.53 16 6 C -0.13 -0.74 6.08 -26.61 -0.16 -0.90 16 7 C -0.12 -1.01 5.54 -26.69 -0.15 -1.15 16 8 C 0.08 0.89 2.76 -26.63 -0.07 0.82 16 9 H 0.06 0.72 7.79 -51.93 -0.40 0.31 16 10 O -0.38 -5.50 9.99 -35.23 -0.35 -5.85 16 11 C 0.06 0.94 5.75 37.15 0.21 1.16 16 12 C -0.12 -2.10 5.58 -26.73 -0.15 -2.25 16 13 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 14 C 0.02 0.57 4.97 -27.88 -0.14 0.44 16 15 C -0.52 -15.21 9.11 -34.44 -0.31 -15.52 16 16 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.62 13.29 55.43 0.74 -26.88 16 19 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 23 C 0.09 1.01 6.04 -3.73 -0.02 0.99 16 24 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.08 0.26 6.20 -51.93 -0.32 -0.06 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.09 0.27 5.54 -51.93 -0.29 -0.02 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.72 8.02 -51.93 -0.42 0.31 16 34 H 0.05 0.68 8.09 -51.93 -0.42 0.26 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.02 0.46 8.14 -51.92 -0.42 0.03 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.09 1.32 6.88 -51.93 -0.36 0.96 16 43 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 346.11 15.07 5.22 5.22 Total: -1.00 -34.46 346.11 -8.31 -42.76 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -7.67 Total: -5.66 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -0.80 Total: -12.13 kcal Atomic # 7 Polarization: -33.30 SS G_CDS: 0.22 Total: -33.08 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.26 Total: -14.26 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.46 -8.31 -42.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224689320.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.708 kcal (2) G-P(sol) polarization free energy of solvation -34.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds