Wall clock time and date at job start Mon Mar 30 2020 01:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21288 * 119.99933 * 2 1 4 4 N 1.34780 * 120.00489 * 180.02562 * 2 1 3 5 5 C 1.46957 * 120.64915 * 359.81927 * 4 2 1 6 6 C 1.53197 * 108.89063 * 233.53185 * 5 4 2 7 7 C 1.53040 * 109.31110 * 305.44560 * 6 5 4 8 8 C 1.53044 * 109.53662 * 61.36306 * 7 6 5 9 9 H 1.08997 * 109.49691 * 58.58900 * 8 7 6 10 10 O 1.42907 * 109.49607 * 178.68241 * 8 7 6 11 11 C 1.42902 * 113.99922 * 209.83973 * 10 8 7 12 12 C 1.52993 * 109.46966 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.47083 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.47128 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47111 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99889 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99944 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99942 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00036 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47146 * 89.99222 * 19 17 15 21 21 H 1.48490 * 109.47255 * 209.99383 * 19 17 15 22 22 H 1.48502 * 109.46918 * 329.99752 * 19 17 15 23 23 C 1.46926 * 120.63278 * 180.02562 * 4 2 1 24 24 H 1.08992 * 109.47027 * 269.99993 * 1 2 3 25 25 H 1.08994 * 109.46977 * 30.00396 * 1 2 3 26 26 H 1.08999 * 109.46581 * 149.99876 * 1 2 3 27 27 H 1.09001 * 109.46843 * 113.75181 * 5 4 2 28 28 H 1.08997 * 109.71602 * 353.46674 * 5 4 2 29 29 H 1.08995 * 109.50005 * 185.49506 * 6 5 4 30 30 H 1.08996 * 109.49270 * 65.39471 * 6 5 4 31 31 H 1.08994 * 109.45892 * 301.34445 * 7 6 5 32 32 H 1.09001 * 109.45142 * 181.37673 * 7 6 5 33 33 H 1.09002 * 109.46591 * 299.99844 * 11 10 8 34 34 H 1.08999 * 109.47060 * 59.99583 * 11 10 8 35 35 H 1.09000 * 109.47585 * 299.99746 * 12 11 10 36 36 H 1.09001 * 109.47163 * 59.99940 * 12 11 10 37 37 H 1.08995 * 109.47212 * 299.99781 * 13 12 11 38 38 H 1.09001 * 109.46831 * 60.00152 * 13 12 11 39 39 H 1.09009 * 109.47177 * 300.00175 * 14 13 12 40 40 H 1.09001 * 109.46957 * 60.00453 * 14 13 12 41 41 H 0.97006 * 119.99673 * 180.02562 * 18 17 15 42 42 H 1.09002 * 109.58861 * 6.60537 * 23 4 2 43 43 H 1.08996 * 109.58519 * 246.32428 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 1.4608 -2.4482 0.0029 6 6 1.9718 -3.3014 1.1681 7 6 3.4930 -3.4358 1.0679 8 6 4.1366 -2.0506 1.1647 9 1 3.8547 -1.5836 2.1084 10 8 5.5585 -2.1799 1.1019 11 6 6.2665 -1.1651 1.8167 12 6 7.7719 -1.4015 1.6806 13 6 8.5301 -0.3146 2.4453 14 6 10.0355 -0.5514 2.3098 15 6 10.7823 0.5188 3.0636 16 1 10.2375 1.2908 3.5866 17 6 12.1609 0.5128 3.0845 18 7 12.8242 -0.4270 2.4472 19 14 13.0865 1.8398 4.0183 20 1 13.3107 1.3956 5.4175 21 1 14.3953 2.0859 3.3614 22 1 12.2892 3.0926 4.0185 23 6 3.6501 -1.1833 0.0000 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3632 -0.8900 -0.5139 27 1 1.6410 -2.9688 -0.9377 28 1 0.3923 -2.2690 0.1224 29 1 1.5155 -4.2902 1.1225 30 1 1.7103 -2.8226 2.1117 31 1 3.7552 -3.8920 0.1134 32 1 3.8565 -4.0628 1.8821 33 1 6.0139 -0.1877 1.4055 34 1 5.9866 -1.1998 2.8695 35 1 8.0249 -2.3789 2.0914 36 1 8.0515 -1.3665 0.6276 37 1 8.2771 0.6626 2.0342 38 1 8.2506 -0.3492 3.4984 39 1 10.2882 -1.5287 2.7212 40 1 10.3153 -0.5171 1.2568 41 1 13.7941 -0.4314 2.4623 42 1 4.0267 -0.1673 0.1190 43 1 4.0113 -1.5990 -0.9406 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224689320.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:30 Heat of formation + Delta-G solvation = -131.593488 kcal Electronic energy + Delta-G solvation = -20420.326047 eV Core-core repulsion = 17270.604567 eV Total energy + Delta-G solvation = -3149.721480 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.30695 -39.53805 -37.76926 -36.37861 -34.46911 -33.58500 -32.10093 -30.68415 -29.60992 -26.66363 -26.23314 -24.06297 -23.29573 -22.23603 -21.62400 -20.03403 -18.46972 -18.31026 -17.50562 -17.35709 -16.64772 -16.56990 -16.41897 -15.81286 -15.63438 -15.00884 -14.63307 -14.44314 -14.24407 -14.14675 -13.86970 -13.69007 -13.37013 -13.14511 -13.03279 -12.87999 -12.66742 -12.39641 -12.31644 -12.11675 -12.01585 -11.90768 -11.58404 -11.50223 -11.36005 -11.12105 -10.94902 -10.71186 -10.57250 -9.69806 -8.21820 -6.33517 1.38411 1.40424 1.51691 1.54373 1.88392 2.39240 2.64412 3.10944 3.55031 3.73971 3.86726 3.93784 3.98342 4.03721 4.12338 4.15020 4.37063 4.42200 4.46290 4.51612 4.54735 4.58973 4.67861 4.70356 4.77330 4.82513 4.91279 4.99324 5.09509 5.12094 5.17819 5.20034 5.23666 5.31940 5.40515 5.50398 5.72334 5.83288 6.19135 6.22985 6.37259 6.83440 7.09837 7.35797 8.90308 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.032387 B = 0.002780 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.343414 B =10069.147549 C =10688.418161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.498 3.502 3 O -0.608 6.608 4 N -0.608 5.608 5 C 0.095 3.905 6 C -0.125 4.125 7 C -0.116 4.116 8 C 0.076 3.924 9 H 0.058 0.942 10 O -0.392 6.392 11 C 0.072 3.928 12 C -0.107 4.107 13 C -0.096 4.096 14 C 0.023 3.977 15 C -0.546 4.546 16 H 0.060 0.940 17 C -0.003 4.003 18 N -0.934 5.934 19 Si 0.968 3.032 20 H -0.270 1.270 21 H -0.281 1.281 22 H -0.264 1.264 23 C 0.090 3.910 24 H 0.113 0.887 25 H 0.091 0.909 26 H 0.116 0.884 27 H 0.085 0.915 28 H 0.125 0.875 29 H 0.114 0.886 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.046 0.954 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.051 0.949 38 H 0.056 0.944 39 H -0.007 1.007 40 H -0.010 1.010 41 H 0.264 0.736 42 H 0.061 0.939 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.630 -7.818 -4.217 31.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.290 3.710 3 O -0.490 6.490 4 N -0.343 5.343 5 C -0.026 4.026 6 C -0.163 4.163 7 C -0.154 4.154 8 C 0.018 3.982 9 H 0.076 0.924 10 O -0.311 6.311 11 C -0.005 4.005 12 C -0.145 4.145 13 C -0.134 4.134 14 C -0.014 4.014 15 C -0.584 4.584 16 H 0.078 0.922 17 C -0.200 4.200 18 N -0.574 5.574 19 Si 0.792 3.208 20 H -0.195 1.195 21 H -0.206 1.206 22 H -0.188 1.188 23 C -0.034 4.034 24 H 0.131 0.869 25 H 0.110 0.890 26 H 0.135 0.865 27 H 0.104 0.896 28 H 0.143 0.857 29 H 0.132 0.868 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.011 0.989 40 H 0.009 0.991 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -30.062 -7.497 -4.361 31.288 hybrid contribution 1.264 0.903 0.404 1.605 sum -28.798 -6.595 -3.958 29.807 Atomic orbital electron populations 1.21998 0.87379 1.06491 1.06468 1.21875 0.92737 0.82278 0.74130 1.90719 1.72235 1.33304 1.52694 1.48302 1.05764 1.07619 1.72582 1.22262 0.98351 0.82017 0.99947 1.21925 0.93335 1.02245 0.98806 1.21648 0.96089 0.93871 1.03802 1.22513 0.80654 0.98054 0.97026 0.92426 1.87903 1.17900 1.50885 1.74378 1.22530 0.91901 0.90467 0.95579 1.21445 0.92611 0.99607 1.00817 1.21368 0.95335 0.97377 0.99282 1.19009 0.91876 0.95433 0.95050 1.21727 0.92223 1.12220 1.32265 0.92161 1.26031 0.98957 0.98477 0.96567 1.70107 1.07834 1.35373 1.44128 0.85408 0.77692 0.79126 0.78594 1.19537 1.20597 1.18808 1.21905 0.81125 1.00720 0.99669 0.86898 0.89024 0.86512 0.89646 0.85676 0.86766 0.91268 0.90623 0.90754 0.93603 0.92389 0.91903 0.92450 0.93033 0.92502 0.98861 0.99137 0.92696 0.92070 0.90641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.46 71.24 0.67 -0.72 16 2 C 0.50 10.22 7.81 87.66 0.68 10.90 16 3 O -0.61 -19.78 16.51 -3.05 -0.05 -19.83 16 4 N -0.61 -10.53 2.98 -818.90 -2.44 -12.98 16 5 C 0.09 0.69 6.21 86.36 0.54 1.23 16 6 C -0.13 -0.96 6.08 30.67 0.19 -0.78 16 7 C -0.12 -1.76 5.54 30.62 0.17 -1.59 16 8 C 0.08 1.70 2.76 30.66 0.08 1.79 16 9 H 0.06 1.33 7.79 -2.39 -0.02 1.31 16 10 O -0.39 -11.46 9.99 -148.98 -1.49 -12.95 16 11 C 0.07 2.23 5.75 71.98 0.41 2.64 16 12 C -0.11 -3.98 5.58 30.59 0.17 -3.81 16 13 C -0.10 -4.17 5.15 30.59 0.16 -4.01 16 14 C 0.02 1.30 4.97 29.85 0.15 1.45 16 15 C -0.55 -32.43 9.11 25.60 0.23 -32.19 16 16 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 17 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 18 N -0.93 -58.66 13.29 21.45 0.28 -58.37 16 19 Si 0.97 45.56 29.54 68.60 2.03 47.58 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 21 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 22 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 23 C 0.09 2.10 6.04 86.35 0.52 2.62 16 24 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.09 0.86 8.14 -2.39 -0.02 0.85 16 26 H 0.12 0.18 6.20 -2.39 -0.01 0.16 16 27 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.13 0.09 5.54 -2.39 -0.01 0.07 16 29 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.05 1.44 8.02 -2.39 -0.02 1.42 16 34 H 0.06 1.67 8.09 -2.39 -0.02 1.65 16 35 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 39 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 40 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 41 H 0.26 15.49 8.31 -92.70 -0.77 14.72 16 42 H 0.06 1.83 6.88 -2.39 -0.02 1.82 16 43 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -78.08 346.11 3.73 -74.36 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: 0.95 Total: 4.37 kcal Atomic # 6 Polarization: -26.62 SS G_CDS: 4.44 Total: -22.18 kcal Atomic # 7 Polarization: -69.19 SS G_CDS: -2.16 Total: -71.35 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -1.54 Total: -32.79 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -78.08 3.73 -74.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224689320.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.238 kcal (2) G-P(sol) polarization free energy of solvation -78.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds