Wall clock time and date at job start Mon Mar 30 2020 01:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21283 * 120.00262 * 2 1 4 4 N 1.34777 * 119.99928 * 179.71906 * 2 1 3 5 5 C 1.46931 * 120.63086 * 0.02562 * 4 2 1 6 6 C 1.53622 * 108.54424 * 126.36867 * 5 4 2 7 7 C 1.53036 * 109.24613 * 54.85288 * 6 5 4 8 8 C 1.53046 * 109.53689 * 298.51382 * 7 6 5 9 9 H 1.08997 * 109.52087 * 301.39246 * 8 7 6 10 10 O 1.42907 * 109.49414 * 181.31346 * 8 7 6 11 11 C 1.42905 * 113.99646 * 150.15922 * 10 8 7 12 12 C 1.52999 * 109.46918 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.46777 * 179.97438 * 12 11 10 14 14 C 1.53007 * 109.46899 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47243 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99872 * 359.97438 * 15 14 13 17 17 C 1.37869 * 120.00323 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99636 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00244 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46897 * 90.00178 * 19 17 15 21 21 H 1.48503 * 109.46799 * 209.99997 * 19 17 15 22 22 H 1.48496 * 109.47059 * 329.99554 * 19 17 15 23 23 C 1.46925 * 120.62933 * 180.27723 * 4 2 1 24 24 H 1.09001 * 109.47107 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46965 * 120.00305 * 1 2 3 26 26 H 1.08994 * 109.46990 * 240.00159 * 1 2 3 27 27 H 1.09000 * 109.58052 * 246.19939 * 5 4 2 28 28 H 1.08995 * 109.58699 * 6.62138 * 5 4 2 29 29 H 1.09003 * 109.63253 * 294.86246 * 6 5 4 30 30 H 1.08996 * 109.45752 * 174.74562 * 6 5 4 31 31 H 1.08995 * 109.46232 * 178.49380 * 7 6 5 32 32 H 1.09000 * 109.46110 * 58.53189 * 7 6 5 33 33 H 1.09002 * 109.47248 * 300.00236 * 11 10 8 34 34 H 1.09001 * 109.46648 * 59.99997 * 11 10 8 35 35 H 1.08991 * 109.47581 * 300.00816 * 12 11 10 36 36 H 1.09002 * 109.46480 * 60.00453 * 12 11 10 37 37 H 1.08998 * 109.47960 * 300.00118 * 13 12 11 38 38 H 1.09002 * 109.47200 * 60.00949 * 13 12 11 39 39 H 1.09000 * 109.46721 * 300.00020 * 14 13 12 40 40 H 1.08991 * 109.47214 * 59.99999 * 14 13 12 41 41 H 0.97002 * 119.99481 * 179.97438 * 18 17 15 42 42 H 1.08994 * 109.58707 * 353.37218 * 23 4 2 43 43 H 1.09001 * 109.58947 * 113.66077 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0057 5 6 1.4603 -2.4476 0.0114 6 6 1.9738 -3.3025 -1.1571 7 6 3.4946 -3.4372 -1.0535 8 6 4.1389 -2.0523 -1.1506 9 1 3.8597 -1.5862 -2.0955 10 8 5.5605 -2.1820 -1.0845 11 6 6.2705 -1.1683 -1.7990 12 6 7.7756 -1.4050 -1.6593 13 6 8.5356 -0.3201 -2.4248 14 6 10.0408 -0.5571 -2.2856 15 6 10.7895 0.5118 -3.0391 16 1 10.2461 1.2829 -3.5651 17 6 12.1680 0.5049 -3.0580 18 7 12.8297 -0.4344 -2.4179 19 14 13.0961 1.8296 -3.9926 20 1 13.3617 2.9783 -3.0899 21 1 14.3843 1.2781 -4.4843 22 1 12.2801 2.2850 -5.1466 23 6 3.6500 -1.1833 0.0119 24 1 -0.3633 1.0277 -0.0005 25 1 -0.3633 -0.5139 -0.8900 26 1 -0.3633 -0.5138 0.8900 27 1 1.6419 -2.9648 0.9536 28 1 0.3922 -2.2664 -0.1082 29 1 1.7144 -2.8248 -2.1020 30 1 1.5170 -4.2911 -1.1120 31 1 3.8598 -4.0653 -1.8659 32 1 3.7546 -3.8923 -0.0978 33 1 5.9929 -1.2042 -2.8525 34 1 6.0172 -0.1903 -1.3897 35 1 8.0528 -1.3689 -0.6058 36 1 8.0290 -2.3831 -2.0683 37 1 8.2584 -0.3567 -3.4783 38 1 8.2823 0.6582 -2.0162 39 1 10.3184 -0.5207 -1.2322 40 1 10.2939 -1.5352 -2.6944 41 1 13.7996 -0.4394 -2.4314 42 1 4.0271 -0.1677 -0.1075 43 1 4.0070 -1.5971 0.9551 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224691356.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:32 Heat of formation + Delta-G solvation = -111.682925 kcal Electronic energy + Delta-G solvation = -20418.911742 eV Core-core repulsion = 17270.053648 eV Total energy + Delta-G solvation = -3148.858093 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.50691 -38.51381 -36.80063 -34.60859 -33.00321 -32.25609 -31.28618 -29.52930 -28.31244 -25.53728 -24.80039 -23.17511 -21.74049 -21.27224 -19.97677 -19.34460 -17.49864 -16.54073 -16.39025 -16.19113 -15.75789 -15.40685 -14.90273 -14.75371 -14.41590 -13.93054 -13.58798 -13.45336 -13.29538 -12.92680 -12.85951 -12.47604 -12.39656 -11.94345 -11.74569 -11.47655 -11.42027 -11.19347 -11.05041 -10.78231 -10.69344 -10.49255 -10.37398 -10.12416 -9.69830 -9.57921 -9.27902 -9.01304 -8.88845 -8.30565 -5.95711 -3.97956 2.32037 2.60520 3.35036 3.40802 3.44465 3.64983 4.19160 4.43803 4.46683 4.49832 4.61255 4.69170 4.82588 4.89851 4.96094 5.01141 5.16905 5.32968 5.37785 5.39424 5.40613 5.44940 5.48463 5.60118 5.67492 5.78389 5.86377 5.88718 6.04896 6.14402 6.23339 6.50786 6.81488 6.95140 7.05524 7.12905 7.34599 7.72938 7.86239 7.87996 8.05145 8.47582 9.09386 9.65852 11.15721 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.032405 B = 0.002780 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.861307 B =10069.302904 C =10688.123288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.510 3.490 3 O -0.543 6.543 4 N -0.612 5.612 5 C 0.104 3.896 6 C -0.133 4.133 7 C -0.118 4.118 8 C 0.078 3.922 9 H 0.062 0.938 10 O -0.378 6.378 11 C 0.061 3.939 12 C -0.115 4.115 13 C -0.108 4.108 14 C 0.021 3.979 15 C -0.520 4.520 16 H 0.055 0.945 17 C 0.055 3.945 18 N -0.896 5.896 19 Si 0.892 3.108 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.088 3.912 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.046 0.954 34 H 0.047 0.953 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.260 0.740 42 H 0.094 0.906 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.171 -7.253 4.872 29.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.298 3.702 3 O -0.420 6.420 4 N -0.348 5.348 5 C -0.019 4.019 6 C -0.171 4.171 7 C -0.156 4.156 8 C 0.019 3.981 9 H 0.080 0.920 10 O -0.296 6.296 11 C -0.015 4.015 12 C -0.153 4.153 13 C -0.146 4.146 14 C -0.016 4.016 15 C -0.559 4.559 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.035 4.035 24 H 0.111 0.889 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.092 0.908 28 H 0.107 0.893 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.035 0.965 40 H 0.035 0.965 41 H 0.070 0.930 42 H 0.113 0.887 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -27.562 -6.890 5.003 28.847 hybrid contribution 0.507 0.800 -0.625 1.135 sum -27.055 -6.089 4.377 28.076 Atomic orbital electron populations 1.21940 0.91673 1.05533 1.04051 1.20872 0.90694 0.83013 0.75577 1.90749 1.70719 1.31010 1.49538 1.48119 1.06761 1.06164 1.73733 1.21928 0.96729 0.83992 0.99236 1.21989 0.95791 1.00543 0.98760 1.21597 0.94010 0.96220 1.03777 1.22298 0.82383 0.95974 0.97425 0.92017 1.87942 1.15872 1.51462 1.74341 1.22802 0.93676 0.90250 0.94776 1.21635 0.90738 1.00979 1.01946 1.21584 0.98639 0.96178 0.98190 1.19088 0.88249 0.97008 0.97209 1.21280 0.91327 1.11546 1.31710 0.92719 1.25034 0.97870 0.95924 0.95719 1.69975 1.07353 1.33329 1.42907 0.86596 0.79278 0.81955 0.80192 1.20665 1.21234 1.19900 1.22117 0.79069 1.02679 0.99617 0.88941 0.89358 0.89370 0.90849 0.89327 0.91227 0.89862 0.90630 0.90730 0.93536 0.93445 0.91636 0.91690 0.93353 0.93279 0.96527 0.96539 0.93039 0.88746 0.90540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.97 8.67 36.01 0.31 -0.66 16 2 C 0.51 5.40 7.81 -10.98 -0.09 5.31 16 3 O -0.54 -8.48 16.50 5.55 0.09 -8.39 16 4 N -0.61 -5.67 2.97 -172.53 -0.51 -6.18 16 5 C 0.10 0.56 6.37 -3.48 -0.02 0.54 16 6 C -0.13 -0.74 6.10 -26.39 -0.16 -0.90 16 7 C -0.12 -1.00 5.53 -26.69 -0.15 -1.15 16 8 C 0.08 0.89 2.76 -26.63 -0.07 0.82 16 9 H 0.06 0.72 7.79 -51.93 -0.40 0.32 16 10 O -0.38 -5.50 9.99 -35.23 -0.35 -5.86 16 11 C 0.06 0.94 5.75 37.16 0.21 1.16 16 12 C -0.12 -2.10 5.58 -26.73 -0.15 -2.25 16 13 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 14 C 0.02 0.57 4.97 -27.88 -0.14 0.44 16 15 C -0.52 -15.21 9.11 -34.44 -0.31 -15.52 16 16 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.62 13.29 55.43 0.74 -26.88 16 19 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 23 C 0.09 1.01 6.05 -3.73 -0.02 0.99 16 24 H 0.09 0.55 8.12 -51.93 -0.42 0.13 16 25 H 0.09 0.32 7.70 -51.93 -0.40 -0.08 16 26 H 0.09 0.31 7.93 -51.93 -0.41 -0.10 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.09 0.26 5.94 -51.93 -0.31 -0.05 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.68 8.09 -51.93 -0.42 0.26 16 34 H 0.05 0.72 8.02 -51.93 -0.42 0.31 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.09 1.31 6.88 -51.93 -0.36 0.96 16 43 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 347.13 15.07 5.23 5.23 Total: -1.00 -34.44 347.13 -8.40 -42.85 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -7.75 Total: -5.78 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: -0.82 Total: -12.15 kcal Atomic # 7 Polarization: -33.29 SS G_CDS: 0.22 Total: -33.06 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.26 Total: -14.24 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.44 -8.40 -42.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224691356.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.837 kcal (2) G-P(sol) polarization free energy of solvation -34.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds