Wall clock time and date at job start Mon Mar 30 2020 01:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21283 * 120.00262 * 2 1 4 4 N 1.34777 * 119.99928 * 179.71906 * 2 1 3 5 5 C 1.46931 * 120.63086 * 0.02562 * 4 2 1 6 6 C 1.53622 * 108.54424 * 126.36867 * 5 4 2 7 7 C 1.53036 * 109.24613 * 54.85288 * 6 5 4 8 8 C 1.53046 * 109.53689 * 298.51382 * 7 6 5 9 9 H 1.08997 * 109.52087 * 301.39246 * 8 7 6 10 10 O 1.42907 * 109.49414 * 181.31346 * 8 7 6 11 11 C 1.42905 * 113.99646 * 150.15922 * 10 8 7 12 12 C 1.52999 * 109.46918 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.46777 * 179.97438 * 12 11 10 14 14 C 1.53007 * 109.46899 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47243 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99872 * 359.97438 * 15 14 13 17 17 C 1.37869 * 120.00323 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99636 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00244 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46897 * 90.00178 * 19 17 15 21 21 H 1.48503 * 109.46799 * 209.99997 * 19 17 15 22 22 H 1.48496 * 109.47059 * 329.99554 * 19 17 15 23 23 C 1.46925 * 120.62933 * 180.27723 * 4 2 1 24 24 H 1.09001 * 109.47107 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46965 * 120.00305 * 1 2 3 26 26 H 1.08994 * 109.46990 * 240.00159 * 1 2 3 27 27 H 1.09000 * 109.58052 * 246.19939 * 5 4 2 28 28 H 1.08995 * 109.58699 * 6.62138 * 5 4 2 29 29 H 1.09003 * 109.63253 * 294.86246 * 6 5 4 30 30 H 1.08996 * 109.45752 * 174.74562 * 6 5 4 31 31 H 1.08995 * 109.46232 * 178.49380 * 7 6 5 32 32 H 1.09000 * 109.46110 * 58.53189 * 7 6 5 33 33 H 1.09002 * 109.47248 * 300.00236 * 11 10 8 34 34 H 1.09001 * 109.46648 * 59.99997 * 11 10 8 35 35 H 1.08991 * 109.47581 * 300.00816 * 12 11 10 36 36 H 1.09002 * 109.46480 * 60.00453 * 12 11 10 37 37 H 1.08998 * 109.47960 * 300.00118 * 13 12 11 38 38 H 1.09002 * 109.47200 * 60.00949 * 13 12 11 39 39 H 1.09000 * 109.46721 * 300.00020 * 14 13 12 40 40 H 1.08991 * 109.47214 * 59.99999 * 14 13 12 41 41 H 0.97002 * 119.99481 * 179.97438 * 18 17 15 42 42 H 1.08994 * 109.58707 * 353.37218 * 23 4 2 43 43 H 1.09001 * 109.58947 * 113.66077 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0057 5 6 1.4603 -2.4476 0.0114 6 6 1.9738 -3.3025 -1.1571 7 6 3.4946 -3.4372 -1.0535 8 6 4.1389 -2.0523 -1.1506 9 1 3.8597 -1.5862 -2.0955 10 8 5.5605 -2.1820 -1.0845 11 6 6.2705 -1.1683 -1.7990 12 6 7.7756 -1.4050 -1.6593 13 6 8.5356 -0.3201 -2.4248 14 6 10.0408 -0.5571 -2.2856 15 6 10.7895 0.5118 -3.0391 16 1 10.2461 1.2829 -3.5651 17 6 12.1680 0.5049 -3.0580 18 7 12.8297 -0.4344 -2.4179 19 14 13.0961 1.8296 -3.9926 20 1 13.3617 2.9783 -3.0899 21 1 14.3843 1.2781 -4.4843 22 1 12.2801 2.2850 -5.1466 23 6 3.6500 -1.1833 0.0119 24 1 -0.3633 1.0277 -0.0005 25 1 -0.3633 -0.5139 -0.8900 26 1 -0.3633 -0.5138 0.8900 27 1 1.6419 -2.9648 0.9536 28 1 0.3922 -2.2664 -0.1082 29 1 1.7144 -2.8248 -2.1020 30 1 1.5170 -4.2911 -1.1120 31 1 3.8598 -4.0653 -1.8659 32 1 3.7546 -3.8923 -0.0978 33 1 5.9929 -1.2042 -2.8525 34 1 6.0172 -0.1903 -1.3897 35 1 8.0528 -1.3689 -0.6058 36 1 8.0290 -2.3831 -2.0683 37 1 8.2584 -0.3567 -3.4783 38 1 8.2823 0.6582 -2.0162 39 1 10.3184 -0.5207 -1.2322 40 1 10.2939 -1.5352 -2.6944 41 1 13.7996 -0.4394 -2.4314 42 1 4.0271 -0.1677 -0.1075 43 1 4.0070 -1.5971 0.9551 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224691356.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:32 Heat of formation + Delta-G solvation = -133.742990 kcal Electronic energy + Delta-G solvation = -20419.868338 eV Core-core repulsion = 17270.053648 eV Total energy + Delta-G solvation = -3149.814689 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.29536 -39.53484 -37.75720 -36.37593 -34.46591 -33.57239 -32.06391 -30.68257 -29.61758 -26.66432 -26.20828 -24.06010 -23.29481 -22.23179 -21.62225 -20.04871 -18.46767 -18.27495 -17.48893 -17.35304 -16.64190 -16.57166 -16.42204 -15.80022 -15.64276 -14.99241 -14.63467 -14.43717 -14.20487 -14.11082 -13.83575 -13.68470 -13.37161 -13.16469 -13.03849 -12.90192 -12.67495 -12.38833 -12.33122 -12.11637 -12.01639 -11.94727 -11.58200 -11.50100 -11.35902 -11.12073 -10.96332 -10.71435 -10.57317 -9.69336 -8.21823 -6.33531 1.38419 1.40435 1.51589 1.55447 1.88764 2.39230 2.64642 3.10955 3.55391 3.74354 3.86796 3.95408 3.98333 4.03813 4.13070 4.14888 4.36894 4.42514 4.48173 4.52518 4.55242 4.60837 4.67516 4.70035 4.76221 4.82282 4.90844 4.99490 5.09792 5.12092 5.17462 5.20052 5.23699 5.32004 5.41454 5.50430 5.72359 5.83342 6.19259 6.23000 6.37681 6.83455 7.10345 7.35807 8.90323 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.032405 B = 0.002780 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.861307 B =10069.302904 C =10688.123288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.498 3.502 3 O -0.608 6.608 4 N -0.609 5.609 5 C 0.098 3.902 6 C -0.125 4.125 7 C -0.116 4.116 8 C 0.076 3.924 9 H 0.057 0.943 10 O -0.392 6.392 11 C 0.072 3.928 12 C -0.107 4.107 13 C -0.096 4.096 14 C 0.023 3.977 15 C -0.546 4.546 16 H 0.060 0.940 17 C -0.003 4.003 18 N -0.934 5.934 19 Si 0.968 3.032 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.263 1.263 23 C 0.090 3.910 24 H 0.086 0.914 25 H 0.116 0.884 26 H 0.117 0.883 27 H 0.086 0.914 28 H 0.124 0.876 29 H 0.069 0.931 30 H 0.113 0.887 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.046 0.954 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.051 0.949 39 H -0.010 1.010 40 H -0.007 1.007 41 H 0.264 0.736 42 H 0.061 0.939 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.647 -7.833 4.248 31.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.289 3.711 3 O -0.490 6.490 4 N -0.343 5.343 5 C -0.023 4.023 6 C -0.163 4.163 7 C -0.154 4.154 8 C 0.018 3.982 9 H 0.076 0.924 10 O -0.311 6.311 11 C -0.005 4.005 12 C -0.145 4.145 13 C -0.134 4.134 14 C -0.014 4.014 15 C -0.584 4.584 16 H 0.078 0.922 17 C -0.200 4.200 18 N -0.574 5.574 19 Si 0.792 3.208 20 H -0.198 1.198 21 H -0.205 1.205 22 H -0.187 1.187 23 C -0.034 4.034 24 H 0.104 0.896 25 H 0.135 0.865 26 H 0.135 0.865 27 H 0.104 0.896 28 H 0.142 0.858 29 H 0.087 0.913 30 H 0.132 0.868 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.009 0.991 40 H 0.012 0.988 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -30.080 -7.515 4.382 31.313 hybrid contribution 1.266 0.906 -0.385 1.603 sum -28.815 -6.608 3.997 29.832 Atomic orbital electron populations 1.21971 0.87335 1.06146 1.06698 1.21887 0.92759 0.82257 0.74164 1.90719 1.72303 1.33319 1.52612 1.48285 1.05755 1.07627 1.72665 1.22301 0.98180 0.81980 0.99851 1.22000 0.93315 1.02239 0.98783 1.21645 0.96092 0.93869 1.03790 1.22518 0.80637 0.98044 0.97039 0.92438 1.87903 1.17886 1.50968 1.74324 1.22531 0.91876 0.90492 0.95576 1.21443 0.92607 0.99615 1.00811 1.21369 0.95327 0.97402 0.99266 1.19008 0.91877 0.95432 0.95053 1.21725 0.92222 1.12270 1.32206 0.92159 1.26031 0.98973 0.98436 0.96596 1.70109 1.07881 1.35289 1.44170 0.85410 0.77782 0.78688 0.78946 1.19766 1.20504 1.18670 1.21909 0.81132 1.00701 0.99658 0.89550 0.86531 0.86459 0.89596 0.85844 0.91253 0.86844 0.90781 0.90624 0.92404 0.93600 0.92437 0.91916 0.92521 0.93014 0.99148 0.98847 0.92699 0.92088 0.90626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 8.67 71.24 0.62 -0.75 16 2 C 0.50 10.17 7.81 87.66 0.68 10.86 16 3 O -0.61 -19.79 16.50 -3.04 -0.05 -19.84 16 4 N -0.61 -10.48 2.97 -818.14 -2.43 -12.91 16 5 C 0.10 0.70 6.37 86.51 0.55 1.25 16 6 C -0.13 -0.96 6.10 30.82 0.19 -0.77 16 7 C -0.12 -1.76 5.53 30.62 0.17 -1.59 16 8 C 0.08 1.71 2.76 30.66 0.08 1.79 16 9 H 0.06 1.33 7.79 -2.39 -0.02 1.31 16 10 O -0.39 -11.47 9.99 -148.98 -1.49 -12.96 16 11 C 0.07 2.23 5.75 71.98 0.41 2.64 16 12 C -0.11 -3.98 5.58 30.59 0.17 -3.81 16 13 C -0.10 -4.17 5.15 30.60 0.16 -4.02 16 14 C 0.02 1.30 4.97 29.85 0.15 1.45 16 15 C -0.55 -32.42 9.11 25.60 0.23 -32.19 16 16 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 17 C 0.00 -0.17 5.46 84.65 0.46 0.30 16 18 N -0.93 -58.67 13.29 21.44 0.28 -58.38 16 19 Si 0.97 45.56 29.54 68.60 2.03 47.59 16 20 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 22 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 23 C 0.09 2.10 6.05 86.35 0.52 2.62 16 24 H 0.09 0.88 8.12 -2.39 -0.02 0.86 16 25 H 0.12 0.35 7.70 -2.38 -0.02 0.33 16 26 H 0.12 0.33 7.93 -2.39 -0.02 0.31 16 27 H 0.09 0.47 8.14 -2.39 -0.02 0.46 16 28 H 0.12 0.08 5.94 -2.39 -0.01 0.07 16 29 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.06 1.67 8.09 -2.39 -0.02 1.65 16 34 H 0.05 1.44 8.02 -2.39 -0.02 1.42 16 35 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 39 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 40 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 41 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 42 H 0.06 1.83 6.88 -2.39 -0.02 1.81 16 43 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -78.14 347.13 3.70 -74.45 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: 0.95 Total: 4.26 kcal Atomic # 6 Polarization: -26.61 SS G_CDS: 4.40 Total: -22.21 kcal Atomic # 7 Polarization: -69.15 SS G_CDS: -2.14 Total: -71.29 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -1.54 Total: -32.79 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -78.14 3.70 -74.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224691356.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.298 kcal (2) G-P(sol) polarization free energy of solvation -78.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds