Wall clock time and date at job start Mon Mar 30 2020 01:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21278 * 120.00054 * 2 1 4 4 N 1.34776 * 119.99849 * 180.02562 * 2 1 3 5 5 C 1.46925 * 120.63117 * 174.39489 * 4 2 1 6 6 C 1.53183 * 108.89603 * 126.33736 * 5 4 2 7 7 C 1.53354 * 109.14770 * 54.57997 * 6 5 4 8 8 O 1.42903 * 109.41727 * 178.67223 * 7 6 5 9 9 C 1.42898 * 114.00109 * 270.12536 * 8 7 6 10 10 C 1.53007 * 109.46857 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.46493 * 180.02562 * 10 9 8 12 12 C 1.53007 * 109.46493 * 180.02562 * 11 10 9 13 13 C 1.50694 * 109.46751 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00650 * 359.97438 * 13 12 11 15 15 C 1.37884 * 120.00161 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00026 * 179.97438 * 15 13 12 17 17 Si 1.86806 * 119.99606 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47085 * 90.00086 * 17 15 13 19 19 H 1.48498 * 109.46971 * 210.00131 * 17 15 13 20 20 H 1.48501 * 109.46772 * 329.99999 * 17 15 13 21 21 C 1.53042 * 109.60689 * 298.71017 * 7 6 5 22 22 C 1.46927 * 120.63093 * 354.40818 * 4 2 1 23 23 H 1.08999 * 109.47382 * 184.88175 * 1 2 3 24 24 H 1.09004 * 109.46831 * 304.87761 * 1 2 3 25 25 H 1.08998 * 109.47505 * 64.87619 * 1 2 3 26 26 H 1.09006 * 109.58220 * 246.20111 * 5 4 2 27 27 H 1.09002 * 109.58493 * 6.47588 * 5 4 2 28 28 H 1.09002 * 109.50244 * 174.65575 * 6 5 4 29 29 H 1.08999 * 109.50072 * 294.75586 * 6 5 4 30 30 H 1.08996 * 109.42690 * 58.75047 * 7 6 5 31 31 H 1.09002 * 109.47104 * 299.99752 * 9 8 7 32 32 H 1.08995 * 109.47330 * 60.00291 * 9 8 7 33 33 H 1.09002 * 109.46865 * 299.99658 * 10 9 8 34 34 H 1.08995 * 109.47109 * 59.99915 * 10 9 8 35 35 H 1.09002 * 109.47223 * 299.99363 * 11 10 9 36 36 H 1.08995 * 109.47575 * 60.00124 * 11 10 9 37 37 H 1.09002 * 109.46865 * 299.99582 * 12 11 10 38 38 H 1.08995 * 109.47109 * 59.99839 * 12 11 10 39 39 H 0.97004 * 119.99865 * 180.02562 * 16 15 13 40 40 H 1.09005 * 109.49839 * 301.42181 * 21 7 6 41 41 H 1.09000 * 109.52410 * 181.34476 * 21 7 6 42 42 H 1.09002 * 109.58802 * 353.38258 * 22 4 2 43 43 H 1.08999 * 109.58045 * 113.65712 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6448 -1.1864 -0.1240 6 6 4.2302 -1.9941 1.0385 7 6 3.5803 -3.3829 1.0637 8 8 4.1447 -4.1523 2.1274 9 6 5.2968 -4.9086 1.7499 10 6 5.8134 -5.6893 2.9602 11 6 7.0474 -6.4986 2.5561 12 6 7.5636 -7.2798 3.7662 13 6 8.7794 -8.0764 3.3683 14 1 9.1469 -8.0305 2.3538 15 6 9.4227 -8.8639 4.2996 16 7 10.4833 -9.5595 3.9522 17 14 8.7875 -8.9427 6.0545 18 1 7.7979 -10.0434 6.1738 19 1 9.9211 -9.1937 6.9804 20 1 8.1387 -7.6536 6.4044 21 6 2.0723 -3.2404 1.2819 22 6 1.4655 -2.4447 0.1221 23 1 -0.3634 -1.0239 0.0875 24 1 -0.3633 0.5877 0.8431 25 1 -0.3634 0.4363 -0.9304 26 1 3.9256 -1.6506 -1.0695 27 1 4.0277 -0.1665 -0.0898 28 1 5.3073 -2.0952 0.9054 29 1 4.0258 -1.4802 1.9778 30 1 3.7638 -3.8862 0.1145 31 1 5.0297 -5.6056 0.9556 32 1 6.0745 -4.2329 1.3941 33 1 6.0805 -4.9926 3.7549 34 1 5.0356 -6.3651 3.3156 35 1 6.7808 -7.1952 1.7612 36 1 7.8251 -5.8225 2.2009 37 1 7.8302 -6.5834 4.5613 38 1 6.7858 -7.9559 4.1209 39 1 10.9357 -10.1138 4.6073 40 1 1.8883 -2.7149 2.2191 41 1 1.6151 -4.2290 1.3234 42 1 0.4107 -2.2552 0.3212 43 1 1.5665 -3.0103 -0.8042 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224693034.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:28 Heat of formation + Delta-G solvation = -102.925833 kcal Electronic energy + Delta-G solvation = -20271.353935 eV Core-core repulsion = 17122.875578 eV Total energy + Delta-G solvation = -3148.478357 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.56868 -38.68914 -36.76913 -34.77687 -32.81561 -32.22521 -31.65893 -29.68951 -29.03528 -25.45899 -24.37649 -23.65574 -21.59431 -21.33504 -20.08123 -19.35762 -17.72072 -16.68079 -16.50796 -16.31486 -15.92184 -15.69825 -14.88205 -14.65407 -14.22606 -14.06897 -13.94395 -13.60129 -13.31646 -12.97291 -12.68147 -12.46583 -12.38279 -12.32552 -11.88844 -11.72532 -11.62007 -11.41211 -11.08653 -10.93680 -10.67420 -10.61520 -10.16195 -9.90964 -9.71302 -9.57696 -9.48639 -9.17211 -9.09866 -8.52802 -6.03513 -4.01404 2.24445 2.58464 3.31927 3.39235 3.43895 3.52328 4.13448 4.26062 4.46520 4.49154 4.62531 4.69451 4.78988 4.85869 4.95998 5.02114 5.11204 5.15188 5.24890 5.31190 5.34497 5.41505 5.44702 5.52192 5.62997 5.65969 5.76666 5.90297 5.99012 6.01747 6.11230 6.32907 6.61241 6.70935 6.89102 6.98266 7.25633 7.31875 7.44852 7.78173 7.80809 8.54875 9.01278 9.59272 11.09952 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.052039 B = 0.002521 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.933291 B =11102.761107 C =11243.679370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.513 3.487 3 O -0.549 6.549 4 N -0.615 5.615 5 C 0.112 3.888 6 C -0.157 4.157 7 C 0.090 3.910 8 O -0.382 6.382 9 C 0.063 3.937 10 C -0.119 4.119 11 C -0.100 4.100 12 C -0.014 4.014 13 C -0.521 4.521 14 H 0.071 0.929 15 C 0.064 3.936 16 N -0.905 5.905 17 Si 0.881 3.119 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.265 1.265 21 C -0.133 4.133 22 C 0.105 3.895 23 H 0.083 0.917 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.069 0.931 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.016 0.984 38 H 0.012 0.988 39 H 0.263 0.737 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.097 0.903 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.242 15.937 -9.238 28.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.302 3.698 3 O -0.426 6.426 4 N -0.349 5.349 5 C -0.010 4.010 6 C -0.195 4.195 7 C 0.032 3.968 8 O -0.302 6.302 9 C -0.013 4.013 10 C -0.157 4.157 11 C -0.138 4.138 12 C -0.051 4.051 13 C -0.559 4.559 14 H 0.089 0.911 15 C -0.136 4.136 16 N -0.544 5.544 17 Si 0.708 3.292 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.190 1.190 21 C -0.171 4.171 22 C -0.018 4.018 23 H 0.102 0.898 24 H 0.113 0.887 25 H 0.114 0.886 26 H 0.087 0.913 27 H 0.114 0.886 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.034 0.966 38 H 0.030 0.970 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.104 0.896 42 H 0.115 0.885 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -21.858 16.377 -8.987 28.754 hybrid contribution -0.015 -0.319 0.701 0.770 sum -21.873 16.059 -8.286 28.372 Atomic orbital electron populations 1.22046 0.91815 1.04660 1.05401 1.20828 0.90682 0.83015 0.75243 1.90718 1.70670 1.31098 1.50152 1.48242 1.07556 1.06298 1.72833 1.21581 0.79127 1.02388 0.97937 1.22493 1.01029 0.96413 0.99583 1.22042 0.92821 0.90986 0.90984 1.87935 1.45093 1.61668 1.35476 1.22718 0.86719 0.93460 0.98437 1.21670 0.98773 0.98617 0.96607 1.21399 0.94466 0.97816 1.00073 1.19567 0.96387 0.95236 0.93930 1.21167 1.10405 1.25740 0.98561 0.91093 1.25053 0.94696 0.95072 0.98826 1.69920 1.20039 1.29523 1.34906 0.86758 0.78524 0.78983 0.84917 1.20307 1.21418 1.18957 1.21991 0.94585 1.01358 0.99177 1.21911 0.97082 0.83963 0.98828 0.89804 0.88718 0.88625 0.91288 0.88641 0.90158 0.90615 0.92079 0.93456 0.93492 0.91717 0.91712 0.92748 0.92712 0.96586 0.97016 0.92772 0.90493 0.89621 0.88460 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.91 10.11 36.01 0.36 -0.55 16 2 C 0.51 4.84 7.79 -10.99 -0.09 4.76 16 3 O -0.55 -7.62 16.52 5.56 0.09 -7.53 16 4 N -0.61 -5.02 2.97 -172.77 -0.51 -5.53 16 5 C 0.11 0.98 6.43 -3.72 -0.02 0.96 16 6 C -0.16 -1.49 5.72 -26.45 -0.15 -1.64 16 7 C 0.09 0.87 2.58 -26.53 -0.07 0.80 16 8 O -0.38 -5.02 9.99 -35.23 -0.35 -5.37 16 9 C 0.06 0.85 5.75 37.16 0.21 1.06 16 10 C -0.12 -1.93 5.58 -26.73 -0.15 -2.08 16 11 C -0.10 -1.95 5.15 -26.73 -0.14 -2.09 16 12 C -0.01 -0.33 4.04 -27.88 -0.11 -0.45 16 13 C -0.52 -15.02 9.66 -34.44 -0.33 -15.35 16 14 H 0.07 2.18 7.99 -52.48 -0.42 1.77 16 15 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 16 N -0.90 -28.16 13.96 55.43 0.77 -27.39 16 17 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.26 -6.37 6.54 56.52 0.37 -6.01 16 21 C -0.13 -0.99 5.73 -26.61 -0.15 -1.14 16 22 C 0.10 0.57 6.31 -3.71 -0.02 0.55 16 23 H 0.08 0.23 5.14 -51.93 -0.27 -0.04 16 24 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.10 0.98 7.00 -51.93 -0.36 0.61 16 28 H 0.08 0.76 7.85 -51.93 -0.41 0.35 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.54 7.79 -51.93 -0.40 0.14 16 31 H 0.05 0.60 8.08 -51.93 -0.42 0.18 16 32 H 0.05 0.60 7.85 -51.93 -0.41 0.19 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 38 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 39 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.10 0.31 5.14 -51.93 -0.27 0.04 16 43 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 LS Contribution 341.47 15.07 5.15 5.15 Total: -1.00 -34.24 341.47 -7.82 -42.06 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: -7.54 Total: -5.35 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -0.76 Total: -13.36 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: 0.26 Total: -32.92 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -0.26 Total: -12.90 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.24 -7.82 -42.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224693034.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.862 kcal (2) G-P(sol) polarization free energy of solvation -34.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds