Wall clock time and date at job start Mon Mar 30 2020 01:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21278 * 120.00054 * 2 1 4 4 N 1.34776 * 119.99849 * 180.02562 * 2 1 3 5 5 C 1.46925 * 120.63117 * 174.39489 * 4 2 1 6 6 C 1.53183 * 108.89603 * 126.33736 * 5 4 2 7 7 C 1.53354 * 109.14770 * 54.57997 * 6 5 4 8 8 O 1.42903 * 109.41727 * 178.67223 * 7 6 5 9 9 C 1.42898 * 114.00109 * 270.12536 * 8 7 6 10 10 C 1.53007 * 109.46857 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.46493 * 180.02562 * 10 9 8 12 12 C 1.53007 * 109.46493 * 180.02562 * 11 10 9 13 13 C 1.50694 * 109.46751 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00650 * 359.97438 * 13 12 11 15 15 C 1.37884 * 120.00161 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00026 * 179.97438 * 15 13 12 17 17 Si 1.86806 * 119.99606 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47085 * 90.00086 * 17 15 13 19 19 H 1.48498 * 109.46971 * 210.00131 * 17 15 13 20 20 H 1.48501 * 109.46772 * 329.99999 * 17 15 13 21 21 C 1.53042 * 109.60689 * 298.71017 * 7 6 5 22 22 C 1.46927 * 120.63093 * 354.40818 * 4 2 1 23 23 H 1.08999 * 109.47382 * 184.88175 * 1 2 3 24 24 H 1.09004 * 109.46831 * 304.87761 * 1 2 3 25 25 H 1.08998 * 109.47505 * 64.87619 * 1 2 3 26 26 H 1.09006 * 109.58220 * 246.20111 * 5 4 2 27 27 H 1.09002 * 109.58493 * 6.47588 * 5 4 2 28 28 H 1.09002 * 109.50244 * 174.65575 * 6 5 4 29 29 H 1.08999 * 109.50072 * 294.75586 * 6 5 4 30 30 H 1.08996 * 109.42690 * 58.75047 * 7 6 5 31 31 H 1.09002 * 109.47104 * 299.99752 * 9 8 7 32 32 H 1.08995 * 109.47330 * 60.00291 * 9 8 7 33 33 H 1.09002 * 109.46865 * 299.99658 * 10 9 8 34 34 H 1.08995 * 109.47109 * 59.99915 * 10 9 8 35 35 H 1.09002 * 109.47223 * 299.99363 * 11 10 9 36 36 H 1.08995 * 109.47575 * 60.00124 * 11 10 9 37 37 H 1.09002 * 109.46865 * 299.99582 * 12 11 10 38 38 H 1.08995 * 109.47109 * 59.99839 * 12 11 10 39 39 H 0.97004 * 119.99865 * 180.02562 * 16 15 13 40 40 H 1.09005 * 109.49839 * 301.42181 * 21 7 6 41 41 H 1.09000 * 109.52410 * 181.34476 * 21 7 6 42 42 H 1.09002 * 109.58802 * 353.38258 * 22 4 2 43 43 H 1.08999 * 109.58045 * 113.65712 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6448 -1.1864 -0.1240 6 6 4.2302 -1.9941 1.0385 7 6 3.5803 -3.3829 1.0637 8 8 4.1447 -4.1523 2.1274 9 6 5.2968 -4.9086 1.7499 10 6 5.8134 -5.6893 2.9602 11 6 7.0474 -6.4986 2.5561 12 6 7.5636 -7.2798 3.7662 13 6 8.7794 -8.0764 3.3683 14 1 9.1469 -8.0305 2.3538 15 6 9.4227 -8.8639 4.2996 16 7 10.4833 -9.5595 3.9522 17 14 8.7875 -8.9427 6.0545 18 1 7.7979 -10.0434 6.1738 19 1 9.9211 -9.1937 6.9804 20 1 8.1387 -7.6536 6.4044 21 6 2.0723 -3.2404 1.2819 22 6 1.4655 -2.4447 0.1221 23 1 -0.3634 -1.0239 0.0875 24 1 -0.3633 0.5877 0.8431 25 1 -0.3634 0.4363 -0.9304 26 1 3.9256 -1.6506 -1.0695 27 1 4.0277 -0.1665 -0.0898 28 1 5.3073 -2.0952 0.9054 29 1 4.0258 -1.4802 1.9778 30 1 3.7638 -3.8862 0.1145 31 1 5.0297 -5.6056 0.9556 32 1 6.0745 -4.2329 1.3941 33 1 6.0805 -4.9926 3.7549 34 1 5.0356 -6.3651 3.3156 35 1 6.7808 -7.1952 1.7612 36 1 7.8251 -5.8225 2.2009 37 1 7.8302 -6.5834 4.5613 38 1 6.7858 -7.9559 4.1209 39 1 10.9357 -10.1138 4.6073 40 1 1.8883 -2.7149 2.2191 41 1 1.6151 -4.2290 1.3234 42 1 0.4107 -2.2552 0.3212 43 1 1.5665 -3.0103 -0.8042 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224693034.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:28 Heat of formation + Delta-G solvation = -125.182688 kcal Electronic energy + Delta-G solvation = -20272.319065 eV Core-core repulsion = 17122.875578 eV Total energy + Delta-G solvation = -3149.443487 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.25670 -39.56465 -37.66098 -36.35359 -34.45210 -33.32187 -32.41470 -30.81854 -30.06937 -26.81467 -25.40500 -24.32052 -23.05767 -22.17093 -21.66820 -20.01402 -18.86370 -18.38752 -17.45064 -17.04227 -16.79234 -16.50532 -16.36704 -15.63015 -15.60708 -14.96879 -14.82042 -14.71150 -14.33502 -14.08477 -13.88079 -13.65178 -13.42731 -13.13635 -12.99422 -12.87861 -12.61627 -12.51838 -12.27039 -12.16749 -11.85672 -11.76292 -11.56910 -11.43683 -11.34780 -11.26917 -10.88450 -10.76512 -10.39614 -9.77584 -8.29845 -6.33858 1.35813 1.37898 1.50260 1.56244 1.99826 2.36286 2.63874 3.05473 3.57442 3.71175 3.83700 4.00345 4.04863 4.08941 4.16222 4.26206 4.30575 4.38176 4.44194 4.48480 4.57917 4.61910 4.68432 4.71564 4.77041 4.79872 4.88649 4.93092 5.08842 5.11903 5.14362 5.16894 5.19031 5.25193 5.47659 5.54565 5.62484 5.67398 6.27648 6.33063 6.37535 6.74304 7.11368 7.30929 8.86871 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.052039 B = 0.002521 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.933291 B =11102.761107 C =11243.679370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.503 3.497 3 O -0.605 6.605 4 N -0.615 5.615 5 C 0.113 3.887 6 C -0.151 4.151 7 C 0.083 3.917 8 O -0.399 6.399 9 C 0.069 3.931 10 C -0.111 4.111 11 C -0.093 4.093 12 C -0.014 4.014 13 C -0.534 4.534 14 H 0.032 0.968 15 C 0.001 3.999 16 N -0.952 5.952 17 Si 0.952 3.048 18 H -0.265 1.265 19 H -0.284 1.284 20 H -0.248 1.248 21 C -0.129 4.129 22 C 0.105 3.895 23 H 0.113 0.887 24 H 0.098 0.902 25 H 0.106 0.894 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.050 0.950 37 H 0.017 0.983 38 H 0.019 0.981 39 H 0.266 0.734 40 H 0.063 0.937 41 H 0.099 0.901 42 H 0.127 0.873 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.116 15.875 -8.985 31.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.294 3.706 3 O -0.487 6.487 4 N -0.348 5.348 5 C -0.010 4.010 6 C -0.189 4.189 7 C 0.026 3.974 8 O -0.319 6.319 9 C -0.007 4.007 10 C -0.148 4.148 11 C -0.130 4.130 12 C -0.051 4.051 13 C -0.572 4.572 14 H 0.051 0.949 15 C -0.196 4.196 16 N -0.593 5.593 17 Si 0.776 3.224 18 H -0.190 1.190 19 H -0.210 1.210 20 H -0.172 1.172 21 C -0.167 4.167 22 C -0.016 4.016 23 H 0.131 0.869 24 H 0.116 0.884 25 H 0.125 0.875 26 H 0.104 0.896 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.036 0.964 38 H 0.038 0.962 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.117 0.883 42 H 0.145 0.855 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -24.762 16.297 -8.747 30.908 hybrid contribution 0.936 -0.315 0.540 1.126 sum -23.826 15.982 -8.207 29.841 Atomic orbital electron populations 1.22077 0.88166 1.06730 1.06117 1.21682 0.92481 0.82396 0.74032 1.90691 1.72085 1.33086 1.52825 1.48401 1.07316 1.07223 1.71824 1.21499 0.80003 1.01129 0.98343 1.22413 1.01021 0.96598 0.98911 1.22301 0.94082 0.90254 0.90785 1.87899 1.44807 1.62004 1.37171 1.22531 0.87305 0.93710 0.97188 1.21480 0.97202 0.98420 0.97718 1.21242 0.95889 0.97727 0.98174 1.19548 0.94566 0.95194 0.95811 1.21546 1.12127 1.26431 0.97086 0.94915 1.26068 0.94856 0.94625 1.04041 1.70073 1.21710 1.30711 1.36783 0.85622 0.78235 0.80001 0.78582 1.18975 1.20983 1.17151 1.21997 0.92993 1.02279 0.99471 1.22154 0.98081 0.82414 0.98923 0.86912 0.88375 0.87528 0.89551 0.90805 0.90491 0.92604 0.90612 0.92183 0.93076 0.92125 0.91427 0.92705 0.93117 0.96449 0.96243 0.92508 0.91775 0.88290 0.85533 0.88795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 10.11 71.24 0.72 -0.57 16 2 C 0.50 8.96 7.79 87.66 0.68 9.64 16 3 O -0.60 -17.19 16.52 -3.02 -0.05 -17.23 16 4 N -0.61 -8.97 2.97 -818.93 -2.44 -11.41 16 5 C 0.11 1.91 6.43 86.36 0.56 2.47 16 6 C -0.15 -2.79 5.72 30.77 0.18 -2.61 16 7 C 0.08 1.44 2.58 30.73 0.08 1.52 16 8 O -0.40 -9.71 9.99 -148.98 -1.49 -11.19 16 9 C 0.07 1.72 5.75 71.98 0.41 2.14 16 10 C -0.11 -3.40 5.58 30.60 0.17 -3.22 16 11 C -0.09 -3.53 5.15 30.60 0.16 -3.38 16 12 C -0.01 -0.65 4.04 29.85 0.12 -0.53 16 13 C -0.53 -31.26 9.66 25.60 0.25 -31.01 16 14 H 0.03 2.09 7.99 -2.91 -0.02 2.07 16 15 C 0.00 0.03 5.47 84.66 0.46 0.50 16 16 N -0.95 -60.44 13.96 21.45 0.30 -60.14 16 17 Si 0.95 44.86 27.47 68.60 1.88 46.75 16 18 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 19 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 20 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 21 C -0.13 -1.57 5.73 30.67 0.18 -1.40 16 22 C 0.11 0.78 6.31 86.36 0.54 1.33 16 23 H 0.11 0.12 5.14 -2.39 -0.01 0.11 16 24 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 25 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 27 H 0.07 1.59 7.00 -2.39 -0.02 1.57 16 28 H 0.08 1.44 7.85 -2.39 -0.02 1.42 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.08 1.11 7.79 -2.39 -0.02 1.09 16 31 H 0.06 1.35 8.08 -2.39 -0.02 1.33 16 32 H 0.05 1.23 7.85 -2.39 -0.02 1.21 16 33 H 0.06 1.90 8.14 -2.39 -0.02 1.89 16 34 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.05 1.94 8.14 -2.39 -0.02 1.93 16 37 H 0.02 0.81 7.20 -2.39 -0.02 0.79 16 38 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 39 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 40 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 41 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.13 0.21 5.14 -2.39 -0.01 0.19 16 43 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 Total: -1.00 -76.41 341.47 3.62 -72.79 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: 0.91 Total: 5.56 kcal Atomic # 6 Polarization: -29.63 SS G_CDS: 4.51 Total: -25.12 kcal Atomic # 7 Polarization: -69.41 SS G_CDS: -2.14 Total: -71.54 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -1.54 Total: -28.43 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.88 Total: 46.75 kcal Total: -76.41 3.62 -72.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224693034.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.396 kcal (2) G-P(sol) polarization free energy of solvation -76.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds