Wall clock time and date at job start Mon Mar 30 2020 01:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.46902 * 109.46819 * 2 1 4 4 C 1.46896 * 109.46621 * 239.99674 * 2 1 3 5 5 C 1.46899 * 109.47129 * 119.99947 * 2 1 3 6 6 C 1.53002 * 109.47139 * 62.43645 * 5 2 1 7 7 H 1.09002 * 109.47211 * 52.20305 * 6 5 2 8 8 C 1.50696 * 109.47314 * 172.20256 * 6 5 2 9 9 H 1.08001 * 120.00633 * 245.58836 * 8 6 5 10 10 C 1.37876 * 119.99801 * 65.58224 * 8 6 5 11 11 N 1.31517 * 120.00408 * 197.61184 * 10 8 6 12 12 Si 1.86803 * 120.00097 * 17.61316 * 10 8 6 13 13 H 1.48500 * 109.47276 * 179.97438 * 12 10 8 14 14 H 1.48503 * 109.46928 * 299.99710 * 12 10 8 15 15 H 1.48497 * 109.47319 * 59.99893 * 12 10 8 16 16 O 1.42898 * 109.47421 * 292.20723 * 6 5 2 17 17 C 1.42899 * 114.00503 * 149.99920 * 16 6 5 18 18 C 1.52997 * 109.47103 * 179.97438 * 17 16 6 19 19 N 1.46499 * 109.46751 * 180.02562 * 18 17 16 20 20 N 1.28603 * 124.61478 * 269.69774 * 19 18 17 21 21 C 1.31380 * 108.71782 * 179.83256 * 20 19 18 22 22 C 1.39678 * 105.90055 * 0.41321 * 21 20 19 23 23 N 1.28597 * 124.62496 * 90.00297 * 19 18 17 24 24 H 1.09000 * 109.46709 * 286.35574 * 1 2 3 25 25 H 1.08993 * 109.47455 * 46.35218 * 1 2 3 26 26 H 1.09004 * 109.47050 * 166.35580 * 1 2 3 27 27 H 1.09000 * 109.46724 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.46935 * 299.99973 * 3 2 1 29 29 H 1.09001 * 109.47309 * 60.00278 * 3 2 1 30 30 H 1.08994 * 109.47870 * 299.99850 * 4 2 1 31 31 H 1.09008 * 109.46914 * 60.00514 * 4 2 1 32 32 H 1.09007 * 109.46668 * 179.97438 * 4 2 1 33 33 H 1.08997 * 109.47138 * 302.43944 * 5 2 1 34 34 H 1.09000 * 109.46739 * 182.43599 * 5 2 1 35 35 H 0.97005 * 119.99297 * 354.93939 * 11 10 8 36 36 H 1.08998 * 109.47032 * 300.00304 * 17 16 6 37 37 H 1.09001 * 109.46595 * 59.99846 * 17 16 6 38 38 H 1.09003 * 109.47252 * 299.99802 * 18 17 16 39 39 H 1.08991 * 109.47365 * 60.00323 * 18 17 16 40 40 H 1.08002 * 127.05089 * 180.15996 * 21 20 19 41 41 H 1.07998 * 127.05026 * 179.76917 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9587 1.3850 0.0000 4 6 1.9586 -0.6926 -1.1994 5 6 1.9588 -0.6925 1.1994 6 6 1.4994 -2.1516 1.1692 7 1 1.7795 -2.6010 0.2164 8 6 2.1568 -2.9087 2.2942 9 1 2.8618 -3.6970 2.0752 10 6 1.8583 -2.5948 3.6032 11 7 2.6558 -2.9884 4.5721 12 14 0.3211 -1.6106 4.0005 13 1 0.2286 -1.4082 5.4687 14 1 0.3887 -0.2915 3.3218 15 1 -0.8764 -2.3502 3.5269 16 8 0.0799 -2.2075 1.3230 17 6 -0.5321 -3.3221 0.6710 18 6 -2.0440 -3.2809 0.9019 19 7 -2.6712 -4.4241 0.2340 20 7 -3.1074 -4.4141 -0.9757 21 6 -3.6032 -5.5983 -1.2549 22 6 -3.4470 -6.3616 -0.0955 23 7 -2.8657 -5.5724 0.7793 24 1 -0.3633 0.2894 0.9861 25 1 -0.3634 0.7093 -0.7435 26 1 -0.3633 -0.9987 -0.2424 27 1 3.0487 1.3850 -0.0005 28 1 1.5953 1.8988 -0.8900 29 1 1.5954 1.8989 0.8900 30 1 1.5954 -1.7202 -1.1994 31 1 1.5953 -0.1786 -2.0894 32 1 3.0487 -0.6922 -1.1996 33 1 1.5602 -0.2045 2.0888 34 1 3.0479 -0.6548 1.2215 35 1 3.4134 -3.5609 4.3742 36 1 -0.3260 -3.2756 -0.3983 37 1 -0.1277 -4.2485 1.0790 38 1 -2.2497 -3.3278 1.9714 39 1 -2.4487 -2.3547 0.4943 40 1 -4.0451 -5.9153 -2.1880 41 1 -3.7430 -7.3898 0.0514 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225039536.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:33 Heat of formation + Delta-G solvation = 180.240326 kcal Electronic energy + Delta-G solvation = -22155.557079 eV Core-core repulsion = 18999.880307 eV Total energy + Delta-G solvation = -3155.676772 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.172 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.43571 -43.57461 -39.13005 -35.52845 -34.26210 -33.31070 -32.19321 -30.67319 -30.46607 -29.93897 -27.64292 -25.06900 -24.71076 -23.77265 -22.80061 -22.03629 -19.53798 -19.05991 -18.75654 -18.56620 -18.13671 -17.66830 -17.06210 -16.89286 -15.82950 -15.62632 -15.37965 -15.13536 -15.02708 -14.86080 -14.47459 -14.31836 -14.16905 -14.06723 -14.00847 -13.78770 -13.73369 -12.97769 -12.60050 -12.53357 -12.19754 -11.96222 -11.68850 -11.41917 -11.23362 -10.63864 -10.31318 -10.19824 -9.86833 -8.07117 -5.94660 0.07138 0.86690 1.21174 1.59710 1.78622 2.05182 2.11308 2.12232 2.24255 2.32766 2.82994 2.97526 3.00920 3.03913 3.21543 3.24211 3.33709 3.42030 3.45185 3.55994 3.57913 3.65498 3.76225 3.78640 3.86242 3.95119 4.01740 4.05808 4.12951 4.25333 4.48021 4.58065 4.74199 4.82039 5.07379 5.29015 5.75173 5.90229 6.09718 6.75010 7.20131 7.42566 7.91215 9.29671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.274 5.274 3 C -0.044 4.044 4 C -0.045 4.045 5 C -0.016 4.016 6 C 0.176 3.824 7 H 0.050 0.950 8 C -0.643 4.643 9 H 0.072 0.928 10 C 0.042 3.958 11 N -0.851 5.851 12 Si 1.087 2.913 13 H -0.294 1.294 14 H -0.295 1.295 15 H -0.273 1.273 16 O -0.405 6.405 17 C 0.061 3.939 18 C 0.138 3.862 19 N -0.156 5.156 20 N -0.295 5.295 21 C -0.025 4.025 22 C -0.026 4.026 23 N -0.281 5.281 24 H 0.119 0.881 25 H 0.104 0.896 26 H 0.127 0.873 27 H 0.116 0.884 28 H 0.112 0.888 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.112 0.888 32 H 0.117 0.883 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.281 0.719 36 H 0.049 0.951 37 H 0.073 0.927 38 H 0.120 0.880 39 H 0.109 0.891 40 H 0.199 0.801 41 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.262 11.433 -15.495 19.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 N 0.068 4.932 3 C -0.185 4.185 4 C -0.187 4.187 5 C -0.134 4.134 6 C 0.120 3.880 7 H 0.067 0.933 8 C -0.679 4.679 9 H 0.090 0.910 10 C -0.172 4.172 11 N -0.479 5.479 12 Si 0.919 3.081 13 H -0.222 1.222 14 H -0.224 1.224 15 H -0.200 1.200 16 O -0.326 6.326 17 C -0.017 4.017 18 C 0.017 3.983 19 N -0.058 5.058 20 N -0.136 5.136 21 C -0.208 4.208 22 C -0.208 4.208 23 N -0.121 5.121 24 H 0.137 0.863 25 H 0.123 0.877 26 H 0.145 0.855 27 H 0.134 0.866 28 H 0.131 0.869 29 H 0.135 0.865 30 H 0.137 0.863 31 H 0.131 0.869 32 H 0.135 0.865 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.092 0.908 36 H 0.067 0.933 37 H 0.092 0.908 38 H 0.139 0.861 39 H 0.128 0.872 40 H 0.215 0.785 41 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -2.521 13.352 -13.472 19.135 hybrid contribution 0.658 -1.819 -1.753 2.611 sum -1.863 11.533 -15.225 19.191 Atomic orbital electron populations 1.24291 0.76548 1.09065 1.08342 1.46481 1.15565 1.14645 1.16535 1.24067 1.05220 0.80935 1.08292 1.24085 1.05216 1.02389 0.86972 1.25565 1.04518 0.97203 0.86145 1.20364 0.78919 0.88801 0.99953 0.93271 1.22039 1.30824 1.23671 0.91376 0.91011 1.26176 1.00726 0.97991 0.92291 1.70878 1.13113 1.27823 1.36052 0.83387 0.75454 0.73785 0.75473 1.22169 1.22384 1.19955 1.87634 1.23767 1.45920 1.75308 1.22411 0.90684 0.92761 0.95802 1.21827 0.92551 0.84234 0.99650 1.47947 1.41408 1.09794 1.06620 1.74017 1.14725 1.24351 1.00489 1.24847 1.04605 0.89645 1.01709 1.24913 1.03092 1.02019 0.90815 1.74202 1.17036 0.93708 1.27199 0.86254 0.87741 0.85454 0.86585 0.86919 0.86528 0.86321 0.86920 0.86482 0.85032 0.84949 0.90762 0.93331 0.90838 0.86143 0.87234 0.78453 0.78396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.45 7.03 60.07 0.42 0.87 16 2 N -0.27 3.05 0.05 -395.61 -0.02 3.03 16 3 C -0.04 0.59 7.98 60.07 0.48 1.07 16 4 C -0.05 0.56 7.58 60.06 0.46 1.01 16 5 C -0.02 0.08 3.48 -3.82 -0.01 0.07 16 6 C 0.18 -0.07 1.85 -27.88 -0.05 -0.12 16 7 H 0.05 -0.11 5.48 -51.93 -0.28 -0.40 16 8 C -0.64 -4.90 9.29 -34.44 -0.32 -5.22 16 9 H 0.07 0.81 8.06 -52.49 -0.42 0.38 16 10 C 0.04 0.44 5.34 -17.82 -0.10 0.34 16 11 N -0.85 -12.29 13.70 55.43 0.76 -11.53 16 12 Si 1.09 7.24 24.92 -169.99 -4.24 3.00 16 13 H -0.29 -2.93 7.11 56.52 0.40 -2.52 16 14 H -0.29 -0.52 5.43 56.52 0.31 -0.21 16 15 H -0.27 -1.57 6.45 56.52 0.36 -1.21 16 16 O -0.41 0.27 3.37 -35.23 -0.12 0.15 16 17 C 0.06 -0.02 5.35 37.16 0.20 0.18 16 18 C 0.14 -0.02 6.91 -4.04 -0.03 -0.05 16 19 N -0.16 -0.38 3.95 -10.62 -0.04 -0.43 16 20 N -0.29 -0.60 12.05 30.68 0.37 -0.23 16 21 C -0.03 -0.01 12.20 -17.21 -0.21 -0.22 16 22 C -0.03 -0.04 12.20 -17.21 -0.21 -0.25 16 23 N -0.28 -1.14 12.05 30.67 0.37 -0.77 16 24 H 0.12 -1.14 7.83 -51.93 -0.41 -1.55 16 25 H 0.10 -1.43 7.92 -51.93 -0.41 -1.84 16 26 H 0.13 -1.21 5.23 -51.93 -0.27 -1.48 16 27 H 0.12 -1.63 8.14 -51.93 -0.42 -2.05 16 28 H 0.11 -1.75 8.04 -51.93 -0.42 -2.16 16 29 H 0.12 -1.54 8.14 -51.93 -0.42 -1.96 16 30 H 0.12 -1.26 5.83 -51.93 -0.30 -1.56 16 31 H 0.11 -1.64 8.14 -51.92 -0.42 -2.07 16 32 H 0.12 -1.50 8.14 -51.92 -0.42 -1.92 16 33 H 0.13 -0.47 4.63 -51.93 -0.24 -0.71 16 34 H 0.13 -0.76 8.11 -51.93 -0.42 -1.18 16 35 H 0.28 4.14 8.73 -40.82 -0.36 3.78 16 36 H 0.05 -0.12 7.98 -51.93 -0.41 -0.54 16 37 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.12 0.13 7.74 -51.93 -0.40 -0.28 16 39 H 0.11 -0.36 8.14 -51.93 -0.42 -0.78 16 40 H 0.20 -0.60 8.06 -52.49 -0.42 -1.03 16 41 H 0.20 -0.36 8.06 -52.49 -0.42 -0.79 16 LS Contribution 318.81 15.07 4.80 4.80 Total: 0.00 -22.38 318.81 -4.15 -26.52 By element: Atomic # 1 Polarization: -15.58 SS G_CDS: -6.66 Total: -22.24 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: 0.63 Total: -2.31 kcal Atomic # 7 Polarization: -11.37 SS G_CDS: 1.44 Total: -9.93 kcal Atomic # 8 Polarization: 0.27 SS G_CDS: -0.12 Total: 0.15 kcal Atomic # 14 Polarization: 7.24 SS G_CDS: -4.24 Total: 3.00 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -22.38 -4.15 -26.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225039536.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.765 kcal (2) G-P(sol) polarization free energy of solvation -22.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 184.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 180.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds