Wall clock time and date at job start Mon Mar 30 2020 01:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.46902 * 109.46819 * 2 1 4 4 C 1.46896 * 109.46621 * 239.99674 * 2 1 3 5 5 C 1.46899 * 109.47129 * 119.99947 * 2 1 3 6 6 C 1.53002 * 109.47139 * 62.43645 * 5 2 1 7 7 H 1.09002 * 109.47211 * 52.20305 * 6 5 2 8 8 C 1.50696 * 109.47314 * 172.20256 * 6 5 2 9 9 H 1.08001 * 120.00633 * 245.58836 * 8 6 5 10 10 C 1.37876 * 119.99801 * 65.58224 * 8 6 5 11 11 N 1.31517 * 120.00408 * 197.61184 * 10 8 6 12 12 Si 1.86803 * 120.00097 * 17.61316 * 10 8 6 13 13 H 1.48500 * 109.47276 * 179.97438 * 12 10 8 14 14 H 1.48503 * 109.46928 * 299.99710 * 12 10 8 15 15 H 1.48497 * 109.47319 * 59.99893 * 12 10 8 16 16 O 1.42898 * 109.47421 * 292.20723 * 6 5 2 17 17 C 1.42899 * 114.00503 * 149.99920 * 16 6 5 18 18 C 1.52997 * 109.47103 * 179.97438 * 17 16 6 19 19 N 1.46499 * 109.46751 * 180.02562 * 18 17 16 20 20 N 1.28603 * 124.61478 * 269.69774 * 19 18 17 21 21 C 1.31380 * 108.71782 * 179.83256 * 20 19 18 22 22 C 1.39678 * 105.90055 * 0.41321 * 21 20 19 23 23 N 1.28597 * 124.62496 * 90.00297 * 19 18 17 24 24 H 1.09000 * 109.46709 * 286.35574 * 1 2 3 25 25 H 1.08993 * 109.47455 * 46.35218 * 1 2 3 26 26 H 1.09004 * 109.47050 * 166.35580 * 1 2 3 27 27 H 1.09000 * 109.46724 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.46935 * 299.99973 * 3 2 1 29 29 H 1.09001 * 109.47309 * 60.00278 * 3 2 1 30 30 H 1.08994 * 109.47870 * 299.99850 * 4 2 1 31 31 H 1.09008 * 109.46914 * 60.00514 * 4 2 1 32 32 H 1.09007 * 109.46668 * 179.97438 * 4 2 1 33 33 H 1.08997 * 109.47138 * 302.43944 * 5 2 1 34 34 H 1.09000 * 109.46739 * 182.43599 * 5 2 1 35 35 H 0.97005 * 119.99297 * 354.93939 * 11 10 8 36 36 H 1.08998 * 109.47032 * 300.00304 * 17 16 6 37 37 H 1.09001 * 109.46595 * 59.99846 * 17 16 6 38 38 H 1.09003 * 109.47252 * 299.99802 * 18 17 16 39 39 H 1.08991 * 109.47365 * 60.00323 * 18 17 16 40 40 H 1.08002 * 127.05089 * 180.15996 * 21 20 19 41 41 H 1.07998 * 127.05026 * 179.76917 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9587 1.3850 0.0000 4 6 1.9586 -0.6926 -1.1994 5 6 1.9588 -0.6925 1.1994 6 6 1.4994 -2.1516 1.1692 7 1 1.7795 -2.6010 0.2164 8 6 2.1568 -2.9087 2.2942 9 1 2.8618 -3.6970 2.0752 10 6 1.8583 -2.5948 3.6032 11 7 2.6558 -2.9884 4.5721 12 14 0.3211 -1.6106 4.0005 13 1 0.2286 -1.4082 5.4687 14 1 0.3887 -0.2915 3.3218 15 1 -0.8764 -2.3502 3.5269 16 8 0.0799 -2.2075 1.3230 17 6 -0.5321 -3.3221 0.6710 18 6 -2.0440 -3.2809 0.9019 19 7 -2.6712 -4.4241 0.2340 20 7 -3.1074 -4.4141 -0.9757 21 6 -3.6032 -5.5983 -1.2549 22 6 -3.4470 -6.3616 -0.0955 23 7 -2.8657 -5.5724 0.7793 24 1 -0.3633 0.2894 0.9861 25 1 -0.3634 0.7093 -0.7435 26 1 -0.3633 -0.9987 -0.2424 27 1 3.0487 1.3850 -0.0005 28 1 1.5953 1.8988 -0.8900 29 1 1.5954 1.8989 0.8900 30 1 1.5954 -1.7202 -1.1994 31 1 1.5953 -0.1786 -2.0894 32 1 3.0487 -0.6922 -1.1996 33 1 1.5602 -0.2045 2.0888 34 1 3.0479 -0.6548 1.2215 35 1 3.4134 -3.5609 4.3742 36 1 -0.3260 -3.2756 -0.3983 37 1 -0.1277 -4.2485 1.0790 38 1 -2.2497 -3.3278 1.9714 39 1 -2.4487 -2.3547 0.4943 40 1 -4.0451 -5.9153 -2.1880 41 1 -3.7430 -7.3898 0.0514 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225039536.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:32 Heat of formation + Delta-G solvation = 166.344149 kcal Electronic energy + Delta-G solvation = -22156.159662 eV Core-core repulsion = 18999.880307 eV Total energy + Delta-G solvation = -3156.279355 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.172 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.50749 -42.83789 -39.12079 -35.70037 -34.72334 -33.41717 -32.21388 -29.96208 -29.63652 -29.45924 -27.63042 -25.10811 -24.33419 -23.82760 -22.77816 -22.08877 -19.97894 -18.63931 -18.42274 -17.92886 -17.77585 -17.44914 -17.01625 -16.87377 -15.85743 -15.63372 -15.32172 -15.22443 -14.69243 -14.29460 -14.25929 -13.93616 -13.59486 -13.37345 -13.26870 -13.15604 -13.04379 -12.90475 -12.63970 -12.59219 -12.47013 -12.22479 -11.84927 -11.79774 -11.37736 -11.12544 -10.67899 -10.36833 -10.33725 -8.88231 -6.73761 0.77205 0.91203 1.16608 1.29388 1.56511 1.65029 1.76597 2.41502 2.66430 2.78187 2.96033 3.04941 3.23688 3.27348 3.74375 3.78531 3.82930 4.08146 4.09454 4.13674 4.17504 4.24218 4.26838 4.30836 4.46077 4.47700 4.55278 4.58646 4.62569 4.68516 4.72608 4.80445 4.90296 4.96405 5.03452 5.32099 5.49401 5.69464 5.81049 5.95349 6.41716 7.23328 7.34598 8.46446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.260 5.260 3 C -0.047 4.047 4 C -0.052 4.052 5 C 0.003 3.997 6 C 0.179 3.821 7 H 0.072 0.928 8 C -0.636 4.636 9 H 0.018 0.982 10 C -0.004 4.004 11 N -0.926 5.926 12 Si 1.104 2.896 13 H -0.344 1.344 14 H -0.208 1.208 15 H -0.264 1.264 16 O -0.391 6.391 17 C 0.069 3.931 18 C 0.135 3.865 19 N -0.164 5.164 20 N -0.302 5.302 21 C -0.024 4.024 22 C -0.030 4.030 23 N -0.328 5.328 24 H 0.111 0.889 25 H 0.146 0.854 26 H 0.113 0.887 27 H 0.121 0.879 28 H 0.145 0.855 29 H 0.116 0.884 30 H 0.100 0.900 31 H 0.149 0.851 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.138 0.862 35 H 0.257 0.743 36 H 0.080 0.920 37 H 0.025 0.975 38 H 0.102 0.898 39 H 0.149 0.851 40 H 0.232 0.768 41 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.082 14.642 -19.629 24.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 N 0.083 4.917 3 C -0.187 4.187 4 C -0.193 4.193 5 C -0.118 4.118 6 C 0.123 3.877 7 H 0.090 0.910 8 C -0.674 4.674 9 H 0.036 0.964 10 C -0.206 4.206 11 N -0.559 5.559 12 Si 0.930 3.070 13 H -0.276 1.276 14 H -0.131 1.131 15 H -0.189 1.189 16 O -0.311 6.311 17 C -0.008 4.008 18 C 0.015 3.985 19 N -0.066 5.066 20 N -0.143 5.143 21 C -0.206 4.206 22 C -0.213 4.213 23 N -0.169 5.169 24 H 0.130 0.870 25 H 0.164 0.836 26 H 0.132 0.868 27 H 0.140 0.860 28 H 0.164 0.836 29 H 0.135 0.865 30 H 0.118 0.882 31 H 0.167 0.833 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.156 0.844 35 H 0.066 0.934 36 H 0.098 0.902 37 H 0.044 0.956 38 H 0.120 0.880 39 H 0.167 0.833 40 H 0.248 0.752 41 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -4.349 16.604 -17.690 24.648 hybrid contribution 1.179 -2.930 -0.687 3.232 sum -3.170 13.674 -18.377 23.124 Atomic orbital electron populations 1.24456 0.76025 1.09469 1.09325 1.46018 1.15814 1.15677 1.14231 1.24302 1.05785 0.78625 1.09976 1.24284 1.05825 1.01761 0.87397 1.24533 1.04704 0.94126 0.88436 1.20227 0.78129 0.91708 0.97673 0.91042 1.22264 1.28903 1.22617 0.93591 0.96354 1.27385 1.01949 0.98426 0.92875 1.71038 1.14949 1.32057 1.37830 0.83364 0.72883 0.77561 0.73190 1.27576 1.13149 1.18922 1.87586 1.22784 1.45025 1.75751 1.22322 0.90790 0.90599 0.97139 1.21956 0.92295 0.85251 0.98977 1.48129 1.41864 1.09767 1.06875 1.73982 1.15012 1.25086 1.00251 1.25458 1.03718 0.88893 1.02539 1.25446 1.02117 1.02931 0.90780 1.74175 1.18759 0.95003 1.28991 0.87045 0.83633 0.86844 0.86048 0.83647 0.86496 0.88172 0.83288 0.85895 0.86080 0.84376 0.93353 0.90213 0.95635 0.87972 0.83333 0.75157 0.76129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 1.35 7.03 127.69 0.90 2.25 16 2 N -0.26 6.74 0.05 ******* -0.07 6.67 16 3 C -0.05 1.48 7.98 127.69 1.02 2.50 16 4 C -0.05 1.46 7.58 127.69 0.97 2.43 16 5 C 0.00 -0.04 3.48 86.30 0.30 0.26 16 6 C 0.18 -0.12 1.85 29.85 0.06 -0.06 16 7 H 0.07 -0.35 5.48 -2.39 -0.01 -0.36 16 8 C -0.64 -12.01 9.29 25.60 0.24 -11.77 16 9 H 0.02 0.52 8.06 -2.91 -0.02 0.50 16 10 C 0.00 -0.09 5.34 84.65 0.45 0.36 16 11 N -0.93 -32.54 13.70 21.45 0.29 -32.25 16 12 Si 1.10 15.94 24.92 68.60 1.71 17.65 16 13 H -0.34 -8.08 7.11 99.48 0.71 -7.37 16 14 H -0.21 -0.05 5.43 99.48 0.54 0.49 16 15 H -0.26 -3.22 6.45 99.48 0.64 -2.58 16 16 O -0.39 0.77 3.37 -148.98 -0.50 0.27 16 17 C 0.07 -0.02 5.35 71.98 0.39 0.36 16 18 C 0.13 -0.08 6.91 86.38 0.60 0.52 16 19 N -0.16 -0.81 3.95 -187.52 -0.74 -1.55 16 20 N -0.30 -0.87 12.05 -56.86 -0.69 -1.56 16 21 C -0.02 0.01 12.20 85.11 1.04 1.05 16 22 C -0.03 -0.08 12.20 85.11 1.04 0.96 16 23 N -0.33 -2.99 12.05 -56.86 -0.69 -3.67 16 24 H 0.11 -2.62 7.83 -2.39 -0.02 -2.63 16 25 H 0.15 -4.87 7.92 -2.39 -0.02 -4.89 16 26 H 0.11 -2.57 5.23 -2.39 -0.01 -2.59 16 27 H 0.12 -3.86 8.14 -2.39 -0.02 -3.88 16 28 H 0.15 -5.38 8.04 -2.39 -0.02 -5.40 16 29 H 0.12 -3.57 8.14 -2.39 -0.02 -3.59 16 30 H 0.10 -2.38 5.83 -2.39 -0.01 -2.40 16 31 H 0.15 -5.15 8.14 -2.38 -0.02 -5.17 16 32 H 0.12 -3.53 8.14 -2.38 -0.02 -3.54 16 33 H 0.12 -1.16 4.63 -2.39 -0.01 -1.17 16 34 H 0.14 -1.74 8.11 -2.39 -0.02 -1.76 16 35 H 0.26 9.52 8.73 -92.70 -0.81 8.71 16 36 H 0.08 -0.51 7.98 -2.39 -0.02 -0.53 16 37 H 0.03 0.25 8.14 -2.39 -0.02 0.23 16 38 H 0.10 0.31 7.74 -2.39 -0.02 0.30 16 39 H 0.15 -1.33 8.14 -2.39 -0.02 -1.35 16 40 H 0.23 -1.99 8.06 -2.91 -0.02 -2.01 16 41 H 0.22 -0.90 8.06 -2.91 -0.02 -0.92 16 Total: 0.00 -64.56 318.81 7.04 -57.52 By element: Atomic # 1 Polarization: -42.66 SS G_CDS: 0.73 Total: -41.93 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: 6.99 Total: -1.15 kcal Atomic # 7 Polarization: -30.47 SS G_CDS: -1.89 Total: -32.36 kcal Atomic # 8 Polarization: 0.77 SS G_CDS: -0.50 Total: 0.27 kcal Atomic # 14 Polarization: 15.94 SS G_CDS: 1.71 Total: 17.65 kcal Total: -64.56 7.04 -57.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225039536.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.868 kcal (2) G-P(sol) polarization free energy of solvation -64.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 166.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds