Wall clock time and date at job start Mon Mar 30 2020 01:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45208 * 109.46666 * 2 1 4 4 C 1.34232 * 116.99618 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00236 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00079 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.47466 * 179.97438 * 6 4 3 8 8 C 1.53000 * 109.47060 * 180.02562 * 7 6 4 9 9 C 1.52996 * 109.47328 * 60.00126 * 8 7 6 10 10 N 1.46899 * 109.46973 * 179.97438 * 9 8 7 11 11 C 1.46899 * 111.00116 * 204.99731 * 10 9 8 12 12 H 1.09001 * 109.47092 * 324.99956 * 11 10 9 13 13 C 1.52999 * 109.47117 * 85.00033 * 11 10 9 14 14 C 1.50703 * 109.47467 * 205.00038 * 11 10 9 15 15 H 1.08000 * 119.99818 * 359.97438 * 14 11 10 16 16 C 1.37872 * 119.99994 * 179.97438 * 14 11 10 17 17 N 1.31514 * 120.00366 * 359.97438 * 16 14 11 18 18 Si 1.86804 * 119.99927 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.47190 * 89.99824 * 18 16 14 20 20 H 1.48497 * 109.46961 * 210.00373 * 18 16 14 21 21 H 1.48505 * 109.46814 * 329.99949 * 18 16 14 22 22 C 1.53002 * 109.46891 * 299.99597 * 9 8 7 23 23 C 1.52997 * 109.46978 * 60.00410 * 22 9 8 24 24 H 1.09003 * 109.46618 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46939 * 299.99720 * 1 2 3 26 26 H 1.08992 * 109.47077 * 59.99823 * 1 2 3 27 27 H 1.08998 * 109.47407 * 240.00533 * 2 1 3 28 28 H 1.08996 * 109.47314 * 119.99461 * 2 1 3 29 29 H 1.08998 * 109.46862 * 300.00390 * 6 4 3 30 30 H 1.09002 * 109.47153 * 59.99773 * 7 6 4 31 31 H 1.09001 * 109.46832 * 299.99964 * 7 6 4 32 32 H 1.09004 * 109.46724 * 180.02562 * 8 7 6 33 33 H 1.09001 * 109.47194 * 299.99650 * 8 7 6 34 34 H 1.08992 * 109.47554 * 59.99639 * 9 8 7 35 35 H 1.00902 * 111.00207 * 328.95512 * 10 9 8 36 36 H 1.08999 * 109.47248 * 180.02562 * 13 11 10 37 37 H 1.09001 * 109.46980 * 300.00102 * 13 11 10 38 38 H 1.09001 * 109.47202 * 59.99990 * 13 11 10 39 39 H 0.97000 * 120.00584 * 179.97438 * 17 16 14 40 40 H 1.09002 * 109.47097 * 180.02562 * 22 9 8 41 41 H 1.09001 * 109.47142 * 300.00176 * 22 9 8 42 42 H 1.09001 * 109.47375 * 59.99908 * 23 22 9 43 43 H 1.09000 * 109.47140 * 179.97438 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3447 1.5450 -0.0005 5 8 4.0808 0.5868 -0.0005 6 6 3.9207 2.9375 0.0000 7 6 5.4486 2.8575 -0.0001 8 6 6.0333 4.2714 0.0011 9 6 5.5618 5.0173 1.2510 10 7 6.1237 6.3745 1.2523 11 6 6.2144 6.9054 2.6191 12 1 5.3693 6.5450 3.2056 13 6 7.5200 6.4350 3.2633 14 6 6.1899 8.4116 2.5757 15 1 6.1148 8.9233 1.6276 16 6 6.2632 9.1362 3.7463 17 7 6.3540 8.5131 4.9009 18 14 6.2320 11.0032 3.6926 19 1 4.8274 11.4775 3.7784 20 1 7.0081 11.5444 4.8371 21 1 6.8358 11.4719 2.4193 22 6 4.0339 5.0973 1.2510 23 6 3.4491 3.6835 1.2499 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.5843 3.4702 -0.8895 30 1 5.7845 2.3257 -0.8903 31 1 5.7846 2.3250 0.8896 32 1 7.1218 4.2144 0.0005 33 1 5.6973 4.8043 -0.8885 34 1 5.8977 4.4844 2.1404 35 1 7.0237 6.3938 0.7964 36 1 7.5871 6.8285 4.2775 37 1 7.5378 5.3456 3.2947 38 1 8.3651 6.7954 2.6767 39 1 6.4060 9.0229 5.7245 40 1 3.6979 5.6291 2.1413 41 1 3.6979 5.6302 0.3615 42 1 3.7851 3.1506 2.1395 43 1 2.3606 3.7405 1.2504 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255253838.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:15 Heat of formation + Delta-G solvation = -131.849765 kcal Electronic energy + Delta-G solvation = -21099.011504 eV Core-core repulsion = 17949.278910 eV Total energy + Delta-G solvation = -3149.732593 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.77371 -39.69103 -37.77703 -36.81956 -34.38369 -32.72525 -31.75543 -31.48020 -28.56612 -27.20819 -25.01021 -23.77771 -23.47809 -22.15258 -21.34027 -20.71775 -18.69999 -18.33907 -17.59680 -17.51611 -16.73453 -16.39108 -15.79677 -15.26957 -15.17990 -14.75672 -14.53989 -14.46394 -14.07484 -13.70626 -13.49945 -13.23482 -13.12445 -12.96159 -12.89350 -12.83215 -12.73563 -12.47580 -12.30828 -12.22267 -12.07253 -12.01761 -11.81310 -11.53745 -11.43227 -11.25083 -10.95066 -10.91864 -10.45404 -8.91225 -8.06881 -6.17730 1.12750 1.44807 1.45185 1.55978 1.67341 2.46193 3.21611 3.44026 3.61578 3.70725 3.84683 4.00700 4.08519 4.20658 4.24994 4.31181 4.35493 4.46017 4.50373 4.55950 4.74682 4.81881 4.83214 4.91332 4.92808 4.94738 5.01280 5.08916 5.11971 5.16567 5.24405 5.27074 5.40527 5.44210 5.46780 5.55504 5.72417 5.88218 6.32149 6.70148 6.71043 6.91047 7.00539 7.52598 8.98701 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.033437 B = 0.003509 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.189080 B = 7978.595686 C = 8363.903866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.051 3.949 3 O -0.360 6.360 4 C 0.471 3.529 5 O -0.538 6.538 6 C -0.073 4.073 7 C -0.093 4.093 8 C -0.107 4.107 9 C 0.083 3.917 10 N -0.682 5.682 11 C 0.219 3.781 12 H 0.002 0.998 13 C -0.158 4.158 14 C -0.512 4.512 15 H 0.056 0.944 16 C 0.007 3.993 17 N -0.925 5.925 18 Si 0.959 3.041 19 H -0.278 1.278 20 H -0.286 1.286 21 H -0.268 1.268 22 C -0.097 4.097 23 C -0.099 4.099 24 H 0.099 0.901 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.132 0.868 30 H 0.081 0.919 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.016 0.984 35 H 0.332 0.668 36 H 0.059 0.941 37 H 0.021 0.979 38 H 0.032 0.968 39 H 0.260 0.740 40 H 0.041 0.959 41 H 0.076 0.924 42 H 0.054 0.946 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.892 -14.940 -11.199 20.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.022 4.022 3 O -0.276 6.276 4 C 0.316 3.684 5 O -0.428 6.428 6 C -0.091 4.091 7 C -0.131 4.131 8 C -0.145 4.145 9 C -0.027 4.027 10 N -0.312 5.312 11 C 0.110 3.890 12 H 0.020 0.980 13 C -0.217 4.217 14 C -0.550 4.550 15 H 0.074 0.926 16 C -0.191 4.191 17 N -0.566 5.566 18 Si 0.785 3.215 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.193 1.193 22 C -0.135 4.135 23 C -0.137 4.137 24 H 0.118 0.882 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.150 0.850 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.034 0.966 35 H 0.149 0.851 36 H 0.078 0.922 37 H 0.040 0.960 38 H 0.051 0.949 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.095 0.905 42 H 0.073 0.927 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.306 -14.906 -11.144 20.808 hybrid contribution 0.971 0.248 1.006 1.420 sum -8.336 -14.658 -10.138 19.676 Atomic orbital electron populations 1.21824 0.90483 1.04333 1.03721 1.23295 0.97102 0.79361 1.02481 1.86536 1.24026 1.33600 1.83462 1.24093 0.80607 0.92837 0.70881 1.90635 1.61110 1.44179 1.46883 1.21176 0.96491 0.88648 1.02836 1.21338 0.91797 0.96830 1.03115 1.21627 1.00521 0.94453 0.97859 1.21555 0.95483 0.88946 0.96718 1.60705 1.30155 1.20736 1.19583 1.18907 0.91928 0.93582 0.84593 0.98017 1.22262 0.99633 0.96488 1.03323 1.21485 1.48661 0.92243 0.92643 0.92576 1.25727 0.95267 1.02947 0.95176 1.70018 1.51964 1.36641 0.97928 0.85533 0.77980 0.80371 0.77572 1.20354 1.21147 1.19259 1.21413 0.94499 0.95459 1.02151 1.21440 1.01687 0.95016 0.95520 0.88198 0.91524 0.91091 0.91077 0.91680 0.84997 0.90008 0.92569 0.91220 0.89745 0.96617 0.85070 0.92168 0.96048 0.94868 0.93134 0.94036 0.90511 0.92718 0.89289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.29 71.98 0.74 -0.90 16 2 C 0.05 0.87 6.19 71.98 0.45 1.32 16 3 O -0.36 -7.86 10.12 -51.44 -0.52 -8.38 16 4 C 0.47 11.55 7.25 71.23 0.52 12.07 16 5 O -0.54 -15.90 15.73 21.97 0.35 -15.56 16 6 C -0.07 -1.62 2.63 -11.54 -0.03 -1.65 16 7 C -0.09 -2.19 4.49 30.59 0.14 -2.05 16 8 C -0.11 -2.73 5.19 30.59 0.16 -2.57 16 9 C 0.08 2.80 2.30 44.92 0.10 2.90 16 10 N -0.68 -27.90 6.04 -473.32 -2.86 -30.76 16 11 C 0.22 11.02 2.38 44.17 0.11 11.13 16 12 H 0.00 0.11 7.11 -2.39 -0.02 0.09 16 13 C -0.16 -7.68 8.92 71.98 0.64 -7.04 16 14 C -0.51 -28.38 8.84 25.60 0.23 -28.15 16 15 H 0.06 3.11 7.81 -2.91 -0.02 3.09 16 16 C 0.01 0.36 5.30 84.65 0.45 0.81 16 17 N -0.92 -53.83 11.32 21.45 0.24 -53.59 16 18 Si 0.96 44.10 29.54 68.60 2.03 46.12 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 20 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 22 C -0.10 -3.03 5.41 30.59 0.17 -2.87 16 23 C -0.10 -2.46 5.13 30.60 0.16 -2.30 16 24 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.07 1.16 8.13 -2.39 -0.02 1.15 16 28 H 0.06 1.15 8.13 -2.39 -0.02 1.13 16 29 H 0.13 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.08 1.76 8.10 -2.39 -0.02 1.74 16 31 H 0.06 1.49 8.10 -2.39 -0.02 1.47 16 32 H 0.07 1.73 8.12 -2.39 -0.02 1.71 16 33 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.02 0.60 7.11 -2.39 -0.02 0.58 16 35 H 0.33 12.75 8.09 -89.69 -0.73 12.02 16 36 H 0.06 3.29 6.07 -2.39 -0.01 3.27 16 37 H 0.02 0.92 7.43 -2.39 -0.02 0.90 16 38 H 0.03 1.53 8.13 -2.39 -0.02 1.51 16 39 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 40 H 0.04 1.55 7.43 -2.39 -0.02 1.53 16 41 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.09 1.97 8.11 -2.39 -0.02 1.95 16 Total: -1.00 -64.02 341.60 3.30 -60.72 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: 0.25 Total: 20.74 kcal Atomic # 6 Polarization: -23.11 SS G_CDS: 3.82 Total: -19.30 kcal Atomic # 7 Polarization: -81.73 SS G_CDS: -2.62 Total: -84.35 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.18 Total: -23.94 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -64.02 3.30 -60.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255253838.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.133 kcal (2) G-P(sol) polarization free energy of solvation -64.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds